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Yeast Genetic Networks
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Book Synopsis Yeast Genetic Networks by : Attila Becskei
Download or read book Yeast Genetic Networks written by Attila Becskei and published by Springer. This book was released on 2011-08-06 with total page 358 pages. Available in PDF, EPUB and Kindle. Book excerpt: Yeast Genetic Networks presents an analysis of small-scale gene networks in yeast. The text discusses different methods to analyze gene expression quantitatively, and describes a collection of mathematical and computational tools.
Book Synopsis Validation and Refinement of Genetic Networks in Yeast by : Trey Ideker
Download or read book Validation and Refinement of Genetic Networks in Yeast written by Trey Ideker and published by . This book was released on 2001 with total page 156 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Yeast Genetics by : Jeffrey S. Smith
Download or read book Yeast Genetics written by Jeffrey S. Smith and published by Humana. This book was released on 2016-09-17 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Yeast Genetics: Methods and Protocols is a collection of methods to best study and manipulate Saccharomyces cerevisiae, a truly genetic powerhouse. The simple nature of a single cell eukaryotic organism, the relative ease of manipulating its genome and the ability to interchangeably exist in both haploid and diploid states have always made it an attractive model organism. Genes can be deleted, mutated, engineered and tagged at will. Saccharomyces cerevisiae has played a major role in the elucidation of multiple conserved cellular processes including MAP kinase signaling, splicing, transcription and many others. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Yeast Genetics: Methods and Protocols will provide a balanced blend of classic and more modern genetic methods relevant to a wide range of research areas and should be widely used as a reference in yeast labs.
Book Synopsis The Yeast Two-hybrid System by : Paul L. Bartel
Download or read book The Yeast Two-hybrid System written by Paul L. Bartel and published by Oxford University Press, USA. This book was released on 1997 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume, part of the Advances in Molecular Biology series, presents work by pioneers in the field and is the first publication devoted solely to the yeast two-hybrid system. It includes detailed protocols, practical advice on troubleshooting, and suggestions for future development. In addition, it illustrates how to construct an activation domain hybrid library, how to identify mutations that disrupt an interaction, and how to use the system in mammalian cells. Many of the contributors have developed new applications and variations of the technique.
Book Synopsis From a to [alpha] by : Hiten D. Madhani
Download or read book From a to [alpha] written by Hiten D. Madhani and published by CSHL Press. This book was released on 2007 with total page 124 pages. Available in PDF, EPUB and Kindle. Book excerpt: From a to&alphais a short supplemental textbook that uses control of yeast mating type as a model for many aspects of cell determination in general. Topics covered include gene silencing; genetic recombination; differentiation; combinatorial gene regulation; mRNA transport to establish asymmetric cell division; signal transduction; evolution of genetic networks; and various aspects of cell biology, including action of cytoskeleton and bud site selection. The book includes a foreword by Mark Ptashne, author of A Genetic Switch.
Book Synopsis Guide to Yeast Genetics: Functional Genomics, Proteomics, and Other Systems Analysis by :
Download or read book Guide to Yeast Genetics: Functional Genomics, Proteomics, and Other Systems Analysis written by and published by Academic Press. This book was released on 2010-02-27 with total page 961 pages. Available in PDF, EPUB and Kindle. Book excerpt: This fully updated edition of the bestselling three-part Methods in Enzymology series, Guide to Yeast Genetics and Molecular Cell Biology is specifically designed to meet the needs of graduate students, postdoctoral students, and researchers by providing all the up-to-date methods necessary to study genes in yeast. Procedures are included that enable newcomers to set up a yeast laboratory and to master basic manipulations. This volume serves as an essential reference for any beginning or experienced researcher in the field. - Provides up-to-date methods necessary to study genes in yeast - Includes proceedures that enable newcomers to set up a yeast laboratory and to master basic manipulations - Serves as an essential reference for any beginning or experienced researcher in the field
Book Synopsis Mapping Genetic Interaction Networks in Yeast by : Anastasija Baryshnikova
Download or read book Mapping Genetic Interaction Networks in Yeast written by Anastasija Baryshnikova and published by . This book was released on 2013 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Epistasis and the Evolutionary Process by : Jason B. Wolf
Download or read book Epistasis and the Evolutionary Process written by Jason B. Wolf and published by Oxford University Press, USA. This book was released on 2000 with total page 348 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the last two decades, research into epistasis has seen explosive growth and has moved the focus of research in evolutionary genetics from a traditional additive approach. We now know the effects of genes are rarely independent, and to reach a fuller understanding of the process of evolution we need to look at gene interactions as well as gene-environment interactions. This book is an overview of non-additive evolutionary genetics, integrating all work to date on all levels of evolutionary investigation of the importance of epistasis in the evolutionary process in general. It includes a historical perspective on this emerging field, in-depth discussion of terminology, discussions of the effects of epistasis at several different levels of biological organization and combinations of theoretical and experimental approaches to analysis.
Book Synopsis Genetic Determinants of Phenotypic Evolution in Saccharomyces Yeast by : Jeremy Roop Roop
Download or read book Genetic Determinants of Phenotypic Evolution in Saccharomyces Yeast written by Jeremy Roop Roop and published by . This book was released on 2016 with total page 120 pages. Available in PDF, EPUB and Kindle. Book excerpt: Years of trait mapping studies have uncovered the genetic determinants underlying phenotypic evolution over both short and long timescales in a variety of organisms. A more general understanding of the mechanisms through which evolution produces phenotypic novelty, however, still remains out of reach. Many outstanding questions remain, among them how coding sequence divergence and gene expression divergence respectively contribute to trait evolution, as well as what role rare and large effect genetic variants play in the genetic networks underlying evolving phenotypes. Using Saccharomyces yeast as a genetically tractable model system in which to probe these questions, we identify and dissect several examples of trait divergence within and between yeast species. We first investigate an instance of intraspecific variation among yeasts isolated from a single population, finding that large effect rare variants at hypermutable loci are drivers of many common morphological and growth phenotypes. Next, in a comparison of both recently-diverged and long-diverged species, we investigate the role that gene expression variation plays in phenotypic evolution. We find evidence in multiple gene networks for complex and coherent regulatory evolution, and in one instance we succeed in identifying the loci that effect this change, as well as several phenotypic novelties they produce. Collectively, these investigations will contribute to the growing body of literature that describe the genetic mechanisms that underlie phenotypic change and seek, eventually, to achieve a greater understanding of basic evolutionary principles.
Book Synopsis Functional Genetics of Industrial Yeasts by : Johannes H. de Winde
Download or read book Functional Genetics of Industrial Yeasts written by Johannes H. de Winde and published by Springer Science & Business Media. This book was released on 2008-01-26 with total page 375 pages. Available in PDF, EPUB and Kindle. Book excerpt: In recent years, new yeast species have proven their value and novel biotechnological applications have emerged. This book compiles the multi-faceted genetic repertoire of several yeasts relevant to modern biotechnology, and describes their utilization in research and application in the light of their genetic make-up and physiological characteristics. Moreover, the book presents a thorough overview of a wide array of methodologies from classical genetics to modern genomics technologies that have been and are being used in functional analysis of yeasts.
Book Synopsis Guide to Yeast Genetics and Molecular and Cell Biology, Part C by : Gerald R. Fink
Download or read book Guide to Yeast Genetics and Molecular and Cell Biology, Part C written by Gerald R. Fink and published by Gulf Professional Publishing. This book was released on 2002 with total page 786 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume and its companion, Volume 350, are specifically designed to meet the needs of graduate students and postdoctoral students as well as researchers, by providing all the up-to-date methods necessary to study genes in yeast. Procedures are included that enable newcomers to set up a yeast laboratory and to master basic manipulations. Relevant background and reference information given for procedures can be used as a guide to developing protocols in a number of disciplines. Specific topics addressed in this book include cytology, biochemistry, cell fractionation, and cell biology.
Download or read book Yeast Genetics written by J.F.T. Spencer and published by Springer. This book was released on 1983-08-23 with total page 562 pages. Available in PDF, EPUB and Kindle. Book excerpt: With contributions by numerous experts
Author :Amy Hin Yan Tong Publisher :Library and Archives Canada = Bibliothèque et Archives Canada ISBN 13 :9780494028339 Total Pages :474 pages Book Rating :4.0/5 (283 download)
Book Synopsis Large-scale Mapping of Genetic Interactions in Saccharomyces Cerevisiae [microform] by : Amy Hin Yan Tong
Download or read book Large-scale Mapping of Genetic Interactions in Saccharomyces Cerevisiae [microform] written by Amy Hin Yan Tong and published by Library and Archives Canada = Bibliothèque et Archives Canada. This book was released on 2005 with total page 474 pages. Available in PDF, EPUB and Kindle. Book excerpt: In chapter four, I describe the application of SGA analysis to the large-scale mapping of genetic interactions. A genetic interaction network containing & sim;1000 genes and & sim;4000 interactions was mapped by crossing mutations in 132 different query genes into a set of & sim;4700 viable gene deletion mutants and scoring the double mutant progeny for fitness defects. Network connectivity is predictive of function because interactions often occur among functionally related genes. Genetic interactions are largely orthogonal (non-overlapping) with protein-protein interactions, but genes coding for proteins that occur in the same pathway or complex display similar patterns of genetic interactions. The genetic network shows dense local neighbourhoods, implying the position of a gene on a partially mapped network is predictive of interactions. Because genetic networks are likely conserved, synthetic genetic interactions may underlie the complex genetics associated with inherited phenotypes in other organisms. In chapter three, I describe the development of a new method for automated identification of genetic interactions, termed synthetic genetic array (SGA) analysis. SGA analysis allows systematic construction of double mutants and examination of their fitness on a genome-wide scale. Functional genomics approaches have provided the opportunity for systematic examination of all genes in a genome, generating functional information such as gene expression profiles, protein expression and localization profiles, protein-protein interaction networks, and systematic characterization of mutants. Budding yeast has been the organism of choice for many of these pioneering studies because of its facile genetics. Large-scale studies have made significant contributions to our understanding of complex biological systems, and this trend is continuously fueled by new development of high-throughput technologies. In this thesis, I describe a general strategy to study protein-protein interaction modules (chapter two). A protein-protein interaction network was generated by focusing on yeast SH3 domains and combining data derived from phage-display ligand consensus sequences and large-scale two-hybrid physical interactions. This study produced a network that is depleted of most false positive interactions and enriched for biologically relevant interactions.
Book Synopsis Guide to Yeast Genetics and Molecular and Cell Biology, Part C by :
Download or read book Guide to Yeast Genetics and Molecular and Cell Biology, Part C written by and published by Academic Press. This book was released on 2002-06-14 with total page 735 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume and its companion, Volume 350, are specifically designed to meet the needs of graduate students and postdoctoral students as well as researchers, by providing all the up-to-date methods necessary to study genes in yeast. Procedures are included that enable newcomers to set up a yeast laboratory and to master basic manipulations. Relevant background and reference information given for procedures can be used as a guide to developing protocols in a number of disciplines. Specific topics addressed in this book include cytology, biochemistry, cell fractionation, and cell biology.
Book Synopsis Yeast Functional Genomics by : Frédéric Devaux
Download or read book Yeast Functional Genomics written by Frédéric Devaux and published by Springer Nature. This book was released on 2022-05-06 with total page 462 pages. Available in PDF, EPUB and Kindle. Book excerpt: This second edition volume discusses the latest techniques and protocols used in the field that were not covered in the previous edition. The chapters in this book are organized into five parts. Part One looks at transcriptomic analyses and Part Two covers DNA replication and protein/DNA interactions. Part Three discusses translation dynamics, protein complexes, and proteomics. Part Four looks at genotypic screens and phenotypic profiling, and Part Five explores in silico integration of functional genomics data. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary material and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting edge and practical, Yeast Functional Genomics: Methods and Protocols, Second Edition is a valuable resource for all researchers interested in learning more about the evolving field of yeast. Chapters 1, 9, 16, 20, 22, 24, and 25 are available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
Book Synopsis Guide to Yeast Genetics and Molecular and Cell Biology by : Christine Guthrie
Download or read book Guide to Yeast Genetics and Molecular and Cell Biology written by Christine Guthrie and published by Gulf Professional Publishing. This book was released on 2004 with total page 980 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Construction and Characterization of Gene Regulatory Networks in Yeast by : Daniel K. Jedrysiak
Download or read book Construction and Characterization of Gene Regulatory Networks in Yeast written by Daniel K. Jedrysiak and published by . This book was released on 2013 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Two major roadblocks in synthetic biology are the difficulties associated with the physical assembly of gene regulatory networks (GRNs) and the lack of characterized biological parts. In this work we aimed to address both of these issues. We developed a novel method for the assembly of GRNs called Brick- Mason assembly. We have shown that the method can assemble a 6 part network in a single day and provides significant advancements over traditional cloning methods. We used BrickMason to assemble GRNs that would allow us to compare natural yeast mechanisms of repression to the steric hindrance based mechanisms that are commonly used in synthetic GRNs in yeast. Our results show that the two mechansisms of repression are not equivalent. This finding opens possibilities for using a new class of repressor in a synthetic context in yeast.
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