Visualizing Biological Information

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Visualizing Biological Information

Author : Clifford A. Pickover
Publisher : World Scientific
ISBN 13 : 9789810214272
Total Pages : 250 pages
Book Rating : 4.2/5 (142 download)

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Book Synopsis Visualizing Biological Information by : Clifford A. Pickover

Download or read book Visualizing Biological Information written by Clifford A. Pickover and published by World Scientific. This book was released on 1995 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological data of all kinds is proliferating at an incredible rate. If humans attempt to read such data in the form of numbers and letters, they will take in the information at a snail's pace. If the information is rendered graphically, however, human analysts can assimilate it and gain insight at a much faster rate. The emphasis of this book is on the graphic representation of information-containing sequences such as DNA and amino acid sequences in order to help the human analyst find interesting and biologically relevant patterns. The editor's goal is to make this voyage through molecular biology, genetics and computer graphics as accessible to a broad audience as possible, with the inclusion of glossaries at the end of most chapters and program outlines where applicable. The book will be of most interest to biologists and computer scientists and the various large reference lists should be of interest to beginners and advanced students of biology, graphic art and computer science. Contributors have sought to find pattern and meaning in the cacophony of genetic and protein sequence data using unusual computer graphics and musical techniques.

A Primer in Biological Data Analysis and Visualization Using R

Author : Gregg Hartvigsen
Publisher : Columbia University Press
ISBN 13 : 0231537042
Total Pages : 245 pages
Book Rating : 4.2/5 (315 download)

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Book Synopsis A Primer in Biological Data Analysis and Visualization Using R by : Gregg Hartvigsen

Download or read book A Primer in Biological Data Analysis and Visualization Using R written by Gregg Hartvigsen and published by Columbia University Press. This book was released on 2014-02-18 with total page 245 pages. Available in PDF, EPUB and Kindle. Book excerpt: R is the most widely used open-source statistical and programming environment for the analysis and visualization of biological data. Drawing on Gregg Hartvigsen's extensive experience teaching biostatistics and modeling biological systems, this text is an engaging, practical, and lab-oriented introduction to R for students in the life sciences. Underscoring the importance of R and RStudio in organizing, computing, and visualizing biological statistics and data, Hartvigsen guides readers through the processes of entering data into R, working with data in R, and using R to visualize data using histograms, boxplots, barplots, scatterplots, and other common graph types. He covers testing data for normality, defining and identifying outliers, and working with non-normal data. Students are introduced to common one- and two-sample tests as well as one- and two-way analysis of variance (ANOVA), correlation, and linear and nonlinear regression analyses. This volume also includes a section on advanced procedures and a chapter introducing algorithms and the art of programming using R.

Visualizing Human Biology

Author : Kathleen A. Ireland
Publisher : John Wiley & Sons
ISBN 13 : 1119398150
Total Pages : 530 pages
Book Rating : 4.1/5 (193 download)

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Book Synopsis Visualizing Human Biology by : Kathleen A. Ireland

Download or read book Visualizing Human Biology written by Kathleen A. Ireland and published by John Wiley & Sons. This book was released on 2017-12-19 with total page 530 pages. Available in PDF, EPUB and Kindle. Book excerpt: Visualizing Human Biology is a visual exploration of the major concepts of biology using the human body as the context. Students are engaged in scientific exploration and critical thinking in this product specially designed for non-science majors. Topics covered include an overview of human anatomy and physiology, nutrition, immunity and disease, cancer biology, and genetics. The aim of Visualizing Human Biology is a greater understanding, appreciation and working knowledge of biology as well as an enhanced ability to make healthy choices and informed healthcare decisions.

Membrane Organization and Dynamics

Author : Amitabha Chattopadhyay
Publisher : Springer
ISBN 13 : 3319666010
Total Pages : 387 pages
Book Rating : 4.3/5 (196 download)

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Book Synopsis Membrane Organization and Dynamics by : Amitabha Chattopadhyay

Download or read book Membrane Organization and Dynamics written by Amitabha Chattopadhyay and published by Springer. This book was released on 2017-12-06 with total page 387 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume brings together information on membrane organization and dynamics from a variety of spectroscopic, microscopic and simulation approaches, spanning a broad range of time scales. The implication of such dynamic information on membrane function in health and disease is a topic of contemporary interest. The chapters cover various aspects of membrane lipid and protein dynamics, explored using a battery of experimental and theoretical approaches. The synthesis of information and knowledge gained by utilizing multiple approaches will provide the reader with a comprehensive understanding of the underlying membrane dynamics and function, which will help to develop robust dynamic models for the understanding of membrane function in healthy and diseased states. In the last few years, crystal structures of an impressive number of membrane proteins have been reported, thanks to tremendous advances in membrane protein crystallization techniques. Some of these recently solved structures belong to the G protein-coupled receptor (GPCR) family, which are particularly difficult to crystallize due to their intrinsic flexibility. Nonetheless, these static structures do not provide the necessary information to understand the function of membrane proteins in the complex membrane milieu. This volume will address the dynamic nature of membrane proteins within the membrane and will provide the reader with an up-to date overview of the theory and practical approaches that can be used. This volume will be invaluable to researchers working in a wide range of scientific areas, from biochemistry and molecular biology to biophysics and protein science. Students of these fields will also find this volume very useful. This book will also be of great use to those who are interested in the dynamic nature of biological processes.

Information Visualization

Author : Colin Ware
Publisher : Elsevier
ISBN 13 : 0123814642
Total Pages : 537 pages
Book Rating : 4.1/5 (238 download)

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Book Synopsis Information Visualization by : Colin Ware

Download or read book Information Visualization written by Colin Ware and published by Elsevier. This book was released on 2013 with total page 537 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This is a book about what the science of perception can tell us about visualization. There is a gold mine of information about how we see to be found in more than a century of work by vision researchers. The purpose of this book is to extract from that large body of research literature those design principles that apply to displaying information effectively"--

A Practical Approach to Microarray Data Analysis

Author : Daniel P. Berrar
Publisher : Springer Science & Business Media
ISBN 13 : 0306478153
Total Pages : 382 pages
Book Rating : 4.3/5 (64 download)

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Book Synopsis A Practical Approach to Microarray Data Analysis by : Daniel P. Berrar

Download or read book A Practical Approach to Microarray Data Analysis written by Daniel P. Berrar and published by Springer Science & Business Media. This book was released on 2007-05-08 with total page 382 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the past several years, DNA microarray technology has attracted tremendous interest in both the scientific community and in industry. With its ability to simultaneously measure the activity and interactions of thousands of genes, this modern technology promises unprecedented new insights into mechanisms of living systems. Currently, the primary applications of microarrays include gene discovery, disease diagnosis and prognosis, drug discovery (pharmacogenomics), and toxicological research (toxicogenomics). Typical scientific tasks addressed by microarray experiments include the identification of coexpressed genes, discovery of sample or gene groups with similar expression patterns, identification of genes whose expression patterns are highly differentiating with respect to a set of discerned biological entities (e.g., tumor types), and the study of gene activity patterns under various stress conditions (e.g., chemical treatment). More recently, the discovery, modeling, and simulation of regulatory gene networks, and the mapping of expression data to metabolic pathways and chromosome locations have been added to the list of scientific tasks that are being tackled by microarray technology. Each scientific task corresponds to one or more so-called data analysis tasks. Different types of scientific questions require different sets of data analytical techniques. Broadly speaking, there are two classes of elementary data analysis tasks, predictive modeling and pattern-detection. Predictive modeling tasks are concerned with learning a classification or estimation function, whereas pattern-detection methods screen the available data for interesting, previously unknown regularities or relationships.

Practical Protein Bioinformatics

Author : Florencio Pazos
Publisher : Springer
ISBN 13 : 3319127276
Total Pages : 111 pages
Book Rating : 4.3/5 (191 download)

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Book Synopsis Practical Protein Bioinformatics by : Florencio Pazos

Download or read book Practical Protein Bioinformatics written by Florencio Pazos and published by Springer. This book was released on 2014-11-28 with total page 111 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes more than 60 web-accessible computational tools for protein analysis and is totally practical, with detailed explanations on how to use these tools and interpret their results and minimal mentions to their theoretical basis (only when that is required for making a better use of them). It covers a wide range of tools for dealing with different aspects of proteins, from their sequences, to their three-dimensional structures, and the biological networks they are immersed in. The selection of tools is based on the experience of the authors that lead a protein bioinformatics facility in a large research centre, with the additional constraint that the tools should be accessible through standard web browsers without requiring the local installation of specific software, command-line tools, etc. The web tools covered include those aimed to retrieve protein information, look for similar proteins, generate pair-wise and multiple sequence alignments of protein sequences, work with protein domains and motifs, study the phylogeny of a family of proteins, retrieve, manipulate and visualize protein three-dimensional structures, predict protein structural features as well as whole three-dimensional structures, extract biological information from protein structures, summarize large protein sets, study protein interaction and metabolic networks, etc. The book is associated to a dynamic web site that will reflect changes in the web addresses of the tools, updates of these, etc. It also contains QR codes that can be scanned with any device to direct its browser to the tool web site. This monograph will be most valuable for researchers in experimental labs without specific knowledge on bioinformatics or computing.

Visualizing Human Biology

Author : Kathleen A. Ireland
Publisher : John Wiley & Sons
ISBN 13 : 0470569190
Total Pages : 1409 pages
Book Rating : 4.4/5 (75 download)

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Book Synopsis Visualizing Human Biology by : Kathleen A. Ireland

Download or read book Visualizing Human Biology written by Kathleen A. Ireland and published by John Wiley & Sons. This book was released on 2010-10-04 with total page 1409 pages. Available in PDF, EPUB and Kindle. Book excerpt: Medical professionals will be able to connect the science of biology to their own lives through the stunning visuals in Visualizing Human Biology. The important concepts of human biology are presented as they relate to the world we live in. The role of the human in the environment is stressed throughout, ensuring that topics such as evolution, ecology, and chemistry are introduced in a non-threatening and logical fashion. Illustrations and visualization features are help make the concepts easier to understand. Medical professionals will appreciate this visual and concise approach.

Biotechnology

Author : Mehdi Khosrowpour
Publisher : Medical Information Science Reference
ISBN 13 : 9781522589037
Total Pages : 0 pages
Book Rating : 4.5/5 (89 download)

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Book Synopsis Biotechnology by : Mehdi Khosrowpour

Download or read book Biotechnology written by Mehdi Khosrowpour and published by Medical Information Science Reference. This book was released on 2019 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biotechnology can be defined as the manipulation of biological process, systems, and organisms in the production of various products. With applications in a number of fields such as biomedical, chemical, mechanical, and civil engineering, research on the development of biologically inspired materials is essential to further advancement. Biotechnology: Concepts, Methodologies, Tools, and Applications is a vital reference source for the latest research findings on the application of biotechnology in medicine, engineering, agriculture, food production, and other areas. It also examines the economic impacts of biotechnology use. Highlighting a range of topics such as pharmacogenomics, biomedical engineering, and bioinformatics, this multi-volume book is ideally designed for engineers, pharmacists, medical professionals, practitioners, academicians, and researchers interested in the applications of biotechnology.

Information Visualization in Data Mining and Knowledge Discovery

Author : Usama M. Fayyad
Publisher : Morgan Kaufmann
ISBN 13 : 9781558606890
Total Pages : 446 pages
Book Rating : 4.6/5 (68 download)

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Book Synopsis Information Visualization in Data Mining and Knowledge Discovery by : Usama M. Fayyad

Download or read book Information Visualization in Data Mining and Knowledge Discovery written by Usama M. Fayyad and published by Morgan Kaufmann. This book was released on 2002 with total page 446 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text surveys research from the fields of data mining and information visualisation and presents a case for techniques by which information visualisation can be used to uncover real knowledge hidden away in large databases.

Visualizing Disease

Author : Domenico Bertoloni Meli
Publisher : University of Chicago Press
ISBN 13 : 022646363X
Total Pages : 311 pages
Book Rating : 4.2/5 (264 download)

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Book Synopsis Visualizing Disease by : Domenico Bertoloni Meli

Download or read book Visualizing Disease written by Domenico Bertoloni Meli and published by University of Chicago Press. This book was released on 2018-01-19 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: Visual anatomy books have been a staple of medical practice and study since the mid-sixteenth century. But the visual representation of diseased states followed a very different pattern from anatomy, one we are only now beginning to investigate and understand. With Visualizing Disease, Domenico Bertoloni Meli explores key questions in this domain, opening a new field of inquiry based on the analysis of a rich body of arresting and intellectually challenging images reproduced here both in black and white and in color. Starting in the Renaissance, Bertoloni Meli delves into the wide range of figures involved in the early study and representation of disease, including not just men of medicine, like anatomists, physicians, surgeons, and pathologists, but also draftsmen and engravers. Pathological preparations proved difficult to preserve and represent, and as Bertoloni Meli takes us through a number of different cases from the Renaissance to the mid-nineteenth century, we gain a new understanding of how knowledge of disease, interactions among medical men and artists, and changes in the technologies of preservation and representation of specimens interacted to slowly bring illustration into the medical world.

Ondex

Author : Jan Taubert
Publisher : Sudwestdeutscher Verlag Fur Hochschulschriften AG
ISBN 13 : 9783838129297
Total Pages : 248 pages
Book Rating : 4.1/5 (292 download)

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Book Synopsis Ondex by : Jan Taubert

Download or read book Ondex written by Jan Taubert and published by Sudwestdeutscher Verlag Fur Hochschulschriften AG. This book was released on 2011-10 with total page 248 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the last decade biological research has changed completely. The reductionism approach of studying only a few biological entities at a time in the past is being replaced by the study of the biological system as a whole today. This requires that existing biological knowledge (data) is made readily available. Effective integration of biological knowledge from databases scattered around the internet and other information resources (for example experimental data) is recognized as a pre-requisite for many aspects of biological research. Systems for the integration of biological knowledge have to overcome several challenges: biological data sources may contain similar or overlapping coverage and the user of such systems is faced with the challenge of generating a consensus data set or selecting the "best" data source; different access methods to databases, different data formats, different naming conventions and erroneous or missing data. To address these challenges and enable effective integration of biological knowledge, the ONDEX system was created. ONDEX provides an integrated view across biological data sources to the user. Here the basic principles behind ONDEX are presented.

Seeing and Visualizing

Author : Zenon W. Pylyshyn
Publisher : MIT Press
ISBN 13 : 9780262162173
Total Pages : 590 pages
Book Rating : 4.1/5 (621 download)

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Book Synopsis Seeing and Visualizing by : Zenon W. Pylyshyn

Download or read book Seeing and Visualizing written by Zenon W. Pylyshyn and published by MIT Press. This book was released on 2003 with total page 590 pages. Available in PDF, EPUB and Kindle. Book excerpt: How we see and how we visualize: why the scientific account differs from our experience.

Visualizing Nature

Author : Stuart Kestenbaum
Publisher : Chronicle Books
ISBN 13 : 1648960375
Total Pages : 112 pages
Book Rating : 4.6/5 (489 download)

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Book Synopsis Visualizing Nature by : Stuart Kestenbaum

Download or read book Visualizing Nature written by Stuart Kestenbaum and published by Chronicle Books. This book was released on 2021-06-25 with total page 112 pages. Available in PDF, EPUB and Kindle. Book excerpt: Visualizing Nature brings together contemporary visionaries to share deeply personal essays on nature, ecology, sustainability, climate change, philosophy, and more. Compiled by editor and poet Stuart Kestenbaum, the contributors represent a wide range of backgrounds and experiences, each honoring nature's power to heal, inspire, guide, amaze, and strengthen. Activist Maulian Dana of the Penobscot Nation writes on the intertwining relationship of motherhood and Mother Earth. Biology professor David Haskell tells the story of the resilient bristlecone pine trees, which live to be as old as 2,100 years. Iranian scholar Alireza Taghdarreh speaks to his experience of translating Emerson's "Nature" into Farsi. A previously unpublished 1962 speech by Rachel Carson complements the collection of more than twenty essays, each inviting the reader into a quiet space of reflection with the opportunity to think deeply about how they relate to the natural world.

Fundamentals of Data Visualization

Author : Claus O. Wilke
Publisher : O'Reilly Media
ISBN 13 : 1492031054
Total Pages : 390 pages
Book Rating : 4.4/5 (92 download)

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Book Synopsis Fundamentals of Data Visualization by : Claus O. Wilke

Download or read book Fundamentals of Data Visualization written by Claus O. Wilke and published by O'Reilly Media. This book was released on 2019-03-18 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: Effective visualization is the best way to communicate information from the increasingly large and complex datasets in the natural and social sciences. But with the increasing power of visualization software today, scientists, engineers, and business analysts often have to navigate a bewildering array of visualization choices and options. This practical book takes you through many commonly encountered visualization problems, and it provides guidelines on how to turn large datasets into clear and compelling figures. What visualization type is best for the story you want to tell? How do you make informative figures that are visually pleasing? Author Claus O. Wilke teaches you the elements most critical to successful data visualization. Explore the basic concepts of color as a tool to highlight, distinguish, or represent a value Understand the importance of redundant coding to ensure you provide key information in multiple ways Use the book’s visualizations directory, a graphical guide to commonly used types of data visualizations Get extensive examples of good and bad figures Learn how to use figures in a document or report and how employ them effectively to tell a compelling story

The Analysis of Biological Data

Author : Michael C. Whitlock
Publisher : Macmillan Higher Education
ISBN 13 : 1319226299
Total Pages : 2074 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis The Analysis of Biological Data by : Michael C. Whitlock

Download or read book The Analysis of Biological Data written by Michael C. Whitlock and published by Macmillan Higher Education. This book was released on 2019-11-22 with total page 2074 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Analysis of Biological Data provides students with a practical foundation of statistics for biology students. Every chapter has several biological or medical examples of key concepts, and each example is prefaced by a substantial description of the biological setting. The emphasis on real and interesting examples carries into the problem sets where students have dozens of practice problems based on real data. The third edition features over 200 new examples and problems. These include new calculation practice problems, which guide the student step by step through the methods, and a greater number of examples and topics come from medical and human health research. Every chapter has been carefully edited for even greater clarity and ease of use. All the data sets, R scripts for all worked examples in the book, as well as many other teaching resources, are available to qualified instructors (see below).

Biomedical Visualisation

Author : Paul M. Rea
Publisher : Springer
ISBN 13 : 3030060705
Total Pages : 142 pages
Book Rating : 4.0/5 (3 download)

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Book Synopsis Biomedical Visualisation by : Paul M. Rea

Download or read book Biomedical Visualisation written by Paul M. Rea and published by Springer. This book was released on 2019-03-27 with total page 142 pages. Available in PDF, EPUB and Kindle. Book excerpt: This edited volume explores the use of technology to enable us to visualise the life sciences in a more meaningful and engaging way. It will enable those interested in visualisation techniques to gain a better understanding of the applications that can be used in imaging and analysis, education, engagement and training. The reader will be able to explore the utilisation of technologies from a number of fields to enable an engaging and meaningful visual representation of the life sciences. This use of technology-enhanced learning will be of benefit for the learner, trainer, in patient care and the wider field of education and engagement. By examining a range of techniques in image capture (photogrammetery, stereophotogrammetry, microphotogrammetry and autostereoscopy), this book will showcase the wide range of tools we can use. Researchers in this field will be able to find something suitable to apply to their work to enhance user engagement through improved visual means using the technologies we have available to us today. It will highlight the uses of these technologies to examine many aspects of the human body, and enable improved ways to enhance visual and tactile learning, including 3D printing. By demonstrating co-design processes, working directly with the end-stage users (including patients), it will also highlight successes in adopting tools like hand motion tracking rehabilitation for patients with conditions like multiple sclerosis. The book will also discuss the applications of immersive environments including virtual, augmented and mixed reality. The ultimate aim is to show how, by using these tools, we can enhance communication, mobile applications, health literacy and illustration of both normal and pathological processes in the body. By applying a wide range of tools and technologies, this volume will highlight the wide range of applications in education, training and learning both for students and faculty, but also for patient care and education. Therefore, the work presented here can be accessed by a wide range of users from faculty and students involved in the design and development of these processes, by examining the pedagogy around these technologies. Importantly, it presents material, which will be of benefit for the patient, engaging them to become more involved with techniques like physiotherapy.