Unraveling the Mechanistic Details of Proton Coupled Electron Transfer (PCET) Using Model Systems

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ISBN 13 :
Total Pages : 210 pages
Book Rating : 4.:/5 (86 download)

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Book Synopsis Unraveling the Mechanistic Details of Proton Coupled Electron Transfer (PCET) Using Model Systems by : Afua Nti

Download or read book Unraveling the Mechanistic Details of Proton Coupled Electron Transfer (PCET) Using Model Systems written by Afua Nti and published by . This book was released on 2012 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Mechanistic Studies of Photo-induced Proton-coupled Electron Transfer and Oxygen Atom Transfer Reactions in Model Systems

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ISBN 13 :
Total Pages : 266 pages
Book Rating : 4.:/5 (165 download)

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Book Synopsis Mechanistic Studies of Photo-induced Proton-coupled Electron Transfer and Oxygen Atom Transfer Reactions in Model Systems by : Justin Mark Hodgkiss

Download or read book Mechanistic Studies of Photo-induced Proton-coupled Electron Transfer and Oxygen Atom Transfer Reactions in Model Systems written by Justin Mark Hodgkiss and published by . This book was released on 2006 with total page 266 pages. Available in PDF, EPUB and Kindle. Book excerpt: (Cont.) The observed PCET rates are strongly attenuated compared with comparable covalentlybridged analogues, indicating that the PT interface reduces electronic coupling. Temperature-isotope dependence of the PCET rates reveals an unusual inverse isotope effect at low temperature, which is interpreted in a model of vibrationally-assisted PCET (chapter IV). Hangman porphyrin dyads have been developed to study bi-directional PCET in relation to oxygen activation. ET and PT coordinates are orthogonalized at fixed distances about a FeIII-OH center (Chapters V and VI). TA spectroscopy and electronic structure calculations reveal that the structural reorganization attendant to metal-centered PCET imposes a severe kinetic cost and alternative quenching pathways prevail. Finally, TA spectroscopy has been used to elucidate the mechanism of photocatalytic OAT for bridged diiron [mu]-oxo bisporphyrins (Chapter VII). The [mu]-oxo bond is photo-cleaved to generate a terminal iron(IV) oxo, which undergoes OAT to nucleophilic substrates. OAT rates are maximized when the bridge actively splays the porphyrin subunits apart to present the oxo before reclamping can occur.

Proton-coupled Electron Transfer

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Publisher : Royal Society of Chemistry
ISBN 13 : 1849731411
Total Pages : 169 pages
Book Rating : 4.8/5 (497 download)

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Book Synopsis Proton-coupled Electron Transfer by : Sebastião J. Formosinho

Download or read book Proton-coupled Electron Transfer written by Sebastião J. Formosinho and published by Royal Society of Chemistry. This book was released on 2012 with total page 169 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers the most recent developments in the field of PCET reactions, from the theoretical and experimental points of view.

Proton-coupled Electron Transfer (PCET) Model Systems

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ISBN 13 :
Total Pages : 84 pages
Book Rating : 4.:/5 (852 download)

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Book Synopsis Proton-coupled Electron Transfer (PCET) Model Systems by : Ewuradjoa Gadzanku

Download or read book Proton-coupled Electron Transfer (PCET) Model Systems written by Ewuradjoa Gadzanku and published by . This book was released on 2013 with total page 84 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Mechanistic Studies of Proton-coupled Electron Transfer Reactions Involving Antioxidants

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (14 download)

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Book Synopsis Mechanistic Studies of Proton-coupled Electron Transfer Reactions Involving Antioxidants by : Kejie Meng

Download or read book Mechanistic Studies of Proton-coupled Electron Transfer Reactions Involving Antioxidants written by Kejie Meng and published by . This book was released on 2018 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The objective of the research was to investigate proton-coupled electron transfer (PCET) reactions involving antioxidants to gain insight into the detailed mechanisms of glutathione (GSH), Trolox, and [alpha]-tocopherol ([alpha]-TOH). PCET reactions are complex redox reactions that transfer electrons and protons sequentially or in concert. These reactions are ubiquitous in natural or artificial processes that produce electrochemical energy that is extractable as electricity or as chemical fuels of high energy content. Examples of processes based on PCET are photosynthesis, respiration, nitrogen fixation, carbon dioxide reduction, redox fuel cells, and artificial photosynthesis. Antioxidants were selected as a PCET model to understand the coupling between proton transfer (PT) and electron transfer (ET) in order to elucidate structure-reactivity relationships under different experimental conditions. PCET reactions were studied with a set of electrochemical techniques to propose a preliminary mechanism that could be validated with digital simulations matching the electrochemical response. In some cases, other analytical techniques were used to aid in the system characterization. This thesis presents the results and discussion of the effects of oxidant-base pairs on the mediated oxidation of GSH, the -2e−-H process of Trolox in aqueous and nonaqueous solvents with various pH values, and the particle collision electrolysis of [alpha]-tocopherol in oil-in-water emulsion droplets on an ultramicroelectrode. Ultimately our goal was to determine the kinetic and thermodynamic factors that control PCET reactions so that they can be applied in designing artificial systems for the production of energy using more abundant reagents with lower cost and better yields.

Building Model Systems to Understand Proton-Coupled Electron Transfer in Heme

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ISBN 13 :
Total Pages : 111 pages
Book Rating : 4.:/5 (846 download)

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Book Synopsis Building Model Systems to Understand Proton-Coupled Electron Transfer in Heme by : Christina J. Hanson

Download or read book Building Model Systems to Understand Proton-Coupled Electron Transfer in Heme written by Christina J. Hanson and published by . This book was released on 2013 with total page 111 pages. Available in PDF, EPUB and Kindle. Book excerpt: Proton-Coupled Electron Transfer (PCET) is an important mechanistic motif in chemistry, which allows for efficient charge transport in many biological systems. We seek to understand how the proton and electron motions are coupled in a bidirectional system allowing for individual turning of the kinetics and thermodynamics. The target of interest is a biomimedic heme system allowing for a detailed mechanistic study of the formation of the oxidation states of heme, of particular interest the highly reactive Fe(IV)=O species. The bidirectional model is prepared using a hangman porphyrin with an axially coordinated to the metal center, and the electron transfer event is triggered by excitation of the porphyrin. The synthesis of this motif is discussed as well as initial studies into the binding of a coordinated electron acceptor to the metal center. In the future, the excited state of the acceptor will be used to trigger the electron transfer portion of the PCET event. To understand the signatures of different electron acceptors and binding to the metal center, a redox inactive zinc porphyrin is used as a model to allow for longer excited state lifetimes and well known transient signatures. Three diimide acceptors have been coordinated through a pyridine ring to the metal center of the porphyrin, and electron transfer was triggered both by excitation of the porphyrin and the acceptor. Lifetimes of the charge separated state were determined using picoseconds and nanosecond transient absorption. The acceptors are then coordinated to a symmetrical iron porphyrin in an attempt to understand the behavior of charge separation in the more complicated open d shell system. Spectroscopic data of both systems is shown.

Intermolecular and Surface Forces

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Publisher : Academic Press
ISBN 13 : 0123919339
Total Pages : 708 pages
Book Rating : 4.1/5 (239 download)

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Book Synopsis Intermolecular and Surface Forces by : Jacob N. Israelachvili

Download or read book Intermolecular and Surface Forces written by Jacob N. Israelachvili and published by Academic Press. This book was released on 2011-07-22 with total page 708 pages. Available in PDF, EPUB and Kindle. Book excerpt: Intermolecular and Surface Forces describes the role of various intermolecular and interparticle forces in determining the properties of simple systems such as gases, liquids and solids, with a special focus on more complex colloidal, polymeric and biological systems. The book provides a thorough foundation in theories and concepts of intermolecular forces, allowing researchers and students to recognize which forces are important in any particular system, as well as how to control these forces. This third edition is expanded into three sections and contains five new chapters over the previous edition. - Starts from the basics and builds up to more complex systems - Covers all aspects of intermolecular and interparticle forces both at the fundamental and applied levels - Multidisciplinary approach: bringing together and unifying phenomena from different fields - This new edition has an expanded Part III and new chapters on non-equilibrium (dynamic) interactions, and tribology (friction forces)

Quantum Tunnelling in Enzyme-catalysed Reactions

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Publisher : Royal Society of Chemistry
ISBN 13 : 0854041222
Total Pages : 412 pages
Book Rating : 4.8/5 (54 download)

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Book Synopsis Quantum Tunnelling in Enzyme-catalysed Reactions by : Rudolf K. Allemann

Download or read book Quantum Tunnelling in Enzyme-catalysed Reactions written by Rudolf K. Allemann and published by Royal Society of Chemistry. This book was released on 2009 with total page 412 pages. Available in PDF, EPUB and Kindle. Book excerpt: In recent years, there has been an explosion in knowledge and research associated with the field of enzyme catalysis and H-tunneling. Rich in its breath and depth, this introduction to modern theories and methods of study is suitable for experienced researchers those new to the subject. Edited by two leading experts, and bringing together the foremost practitioners in the field, this up-to-date account of a rapidly developing field sits at the interface between biology, chemistry and physics. It covers computational, kinetic and structural analysis of tunnelling and the synergy in combining these methods (with a major focus on H-tunneling reactions in enzyme systems). The book starts with a brief overview of proton and electron transfer history by Nobel Laureate, Rudolph A. Marcus. The reader is then guided through chapters covering almost every aspect of reactions in enzyme catalysis ranging from descriptions of the relevant quantum theory and quantum/classical theoretical methodology to the description of experimental results. The theoretical interpretation of these large systems includes both quantum mechanical and statistical mechanical computations, as well as simple more approximate models. Most of the chapters focus on enzymatic catalysis of hydride, proton and H" transfer, an example of the latter being proton coupled electron transfer. There is also a chapter on electron transfer in proteins. This is timely since the theoretical framework developed fifty years ago for treating electron transfers has now been adapted to H-transfers and electron transfers in proteins. Accessible in style, this book is suitable for a wide audience but will be particularly useful to advanced level undergraduates, postgraduates and early postdoctoral workers.

Regulation of Proton Coupled Electron Transfer from Amino Acids in Artificial Model Systems

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ISBN 13 : 9789155459093
Total Pages : 65 pages
Book Rating : 4.4/5 (59 download)

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Book Synopsis Regulation of Proton Coupled Electron Transfer from Amino Acids in Artificial Model Systems by : Martin Sjödin

Download or read book Regulation of Proton Coupled Electron Transfer from Amino Acids in Artificial Model Systems written by Martin Sjödin and published by . This book was released on 2004 with total page 65 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Spectroscopic Investigation of Photo-induced Proton-coupled Electron Transfer and Dexter Energy Transfer in Model Systems

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ISBN 13 :
Total Pages : 266 pages
Book Rating : 4.:/5 (456 download)

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Book Synopsis Spectroscopic Investigation of Photo-induced Proton-coupled Electron Transfer and Dexter Energy Transfer in Model Systems by : Elizabeth Renee Young

Download or read book Spectroscopic Investigation of Photo-induced Proton-coupled Electron Transfer and Dexter Energy Transfer in Model Systems written by Elizabeth Renee Young and published by . This book was released on 2009 with total page 266 pages. Available in PDF, EPUB and Kindle. Book excerpt: Spectroscopic investigations of systems designed to advance the mechanistic interrogation of photo-induced proton coupled electron transfer (PCET) and proton-coupled (through-bond) energy transfer (PCEnT) are presented. PCET is ubiquitous in Nature, where it is at the heart of bioenergy conversion and catalysis (Chapter I). Systems of relevance to mechanistic studies of PCET and PCEnT are the central tenet of this work. In uni-directional PCET, electron transfer (ET) occurs from an electron donor (De) to an electron acceptor (Ae) through a hydrogen bonded proton interface. The proton interface plays a vital role in mediating ET. Thus, the exact ionization configuration of the interface must be uncovered to fuIIy realize the influence of the interface. SpecificaIIy, does the interface exists in the non-ionized (i.e. amidine-carboxylic acid) or ionized (i.e. amidinium-carboxylate) form. Strategies to spectraIIy monitor the interface ionization state by extending electronic communication from a porphyrinic chromophore to its pendant amidinium functionality are pursued through examination of an alkynylamidinium Ni(II) porphyrin (Chapter II) and an amidinium appended Zn(II) purpurin (Chapter III). With the ionization state of the interface resolved, mechanistic studies of photo-induced PCET between an identical De and Ae pair juxtaposed by a non-ionized (amidine-carboxylic acid) and an ionized (amidinium-sulfonate) interface are undertaken to reveal that PCET occurring through an ionized interface is more strongly coupled to the surrounding solvent environment (Chapter IV). Work on this system is extended to a second solvent of similar dielectric constant to establish that molecular variation of the solvent environment impacts PCET, likely through its interaction with the proton interface (Chapter V). Two water-soluble amidinium-appended ferrocene moieties are presented as building blocks for aqueous bi-directional PCET in which PT occurs to the bulk and ET occurs along a covalently bound coordinate (Chapter VI). ET and through-bond EnT are described by the semiclassical nonradiative decay formalism, meaning both processes should be sensitive to an intervening proton network. For the first time, PCEnT is established using ferrocenyl-amidine moieties bound through an amidinecarboxylic acid interface to Ru(II) polypyridyl complexes (Chapter VII).

Towards New Model Systems for the Study of Proton-coupled Electron Transfer

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ISBN 13 :
Total Pages : 46 pages
Book Rating : 4.:/5 (426 download)

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Book Synopsis Towards New Model Systems for the Study of Proton-coupled Electron Transfer by : Jay Lee Yang

Download or read book Towards New Model Systems for the Study of Proton-coupled Electron Transfer written by Jay Lee Yang and published by . This book was released on 2009 with total page 46 pages. Available in PDF, EPUB and Kindle. Book excerpt: Two new model systems for the study of orthogonal proton-coupled electron transfer (PCET) have been developed. The first model system is based on Ru"(HzO)(tpy)(bpy) (tpy = 2,2';6',2"terpyridine, bpy = 2,2'-bipyridine) where methyl viologen (MV2 ) electron acceptors were appended to the ruthenium aqua complex through the bpy. Picosecond transient absorption measurements show that electron transfer from the excited state of the ruthenium complex to MV2+ occurs with [tau] -200 ps. Experiments performed in water and buffered solution at pH = 7 show no evidence of the loss of proton from the aqua ligand to the bulk solvent or to the phosphate buffer. A minor kinetic isotope effect for the rate of charge separation was found with kH/kD = 1.8 + 0.1 ps. Preliminary synthetic attempts of coupling the ET event to the PT event was accomplished by appending xanthene "Hangman" scaffolds to the 4' position of the tpy. The feasibility of modifying the xanthene scaffold to accommodate various hanging groups has been demonstrated. The second model system is based on Re'(CO)3(phen)(pyr) (phen = 1,10phenanthroline, pyr = pyridine) where tyrosine was appended to the rhenium complex through the axial pyr ligand. Unlike previous Re'(CO)3(bpy)(CN) (CN = cyanide) systems, substitution to the more rigid phen extended the lifetime of the excited state of the rhenium complex to 3.0 ls, which allowed PCET to occur from the tyrosine to the rhenium metal center and hydrogenbonded base in dichloromethane. This was inferred from substantial emission quenching of the rhenium-tyrosine complex through the titration of base (base = pyridine, imidazole, 2,4,6trimethylpyridine). Equilibrium constants measuring the extent of formation of the [rheniumtyrosine---base]+ species were found to correlate with the strength of the base based on aqueous pKa values.

Mechanistic Studies on the Electrochemistry of Proton Coupled Electron Transfer and the Influence of Hydrogen Bonding

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (67 download)

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Book Synopsis Mechanistic Studies on the Electrochemistry of Proton Coupled Electron Transfer and the Influence of Hydrogen Bonding by : Timothy M. Alligrant

Download or read book Mechanistic Studies on the Electrochemistry of Proton Coupled Electron Transfer and the Influence of Hydrogen Bonding written by Timothy M. Alligrant and published by . This book was released on 2010 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: This research has investigated proton-coupled electron transfer (PCET) of quinone/hydroquinone and other simple organic PCET species for the purpose of furthering the knowledge of the thermodynamic and kinetic effects due to reduction and oxidation of such systems. Each of these systems were studied involving the addition of various acid/base chemistries to influence the thermodynamics and kinetics upon electron transfer. It is the expectation that the advancement of the knowledge of acid/base catalysis in electrochemistry gleaned from these studies might be applied in fuel cell research, chemical synthesis, the study of enzymes within biological systems or to simply advance the knowledge of acid/base catalysis in electrochemistry. Furthermore, it was the intention of this work to evaluate a system that involved concerted-proton electron transfer (CPET), because this is the process by which enzymes are believed to catalyze PCET reactions. However, none of the investigated systems were found to transfer an electron and proton by concerted means. Another goal of this work was to investigate a system where hydrogen bond formation could be controlled or studied via electrochemical methods, in order to understand the kinetic and thermodynamic effects complexation has on PCET systems. This goal was met, which allowed for the establishment of in situ studies of hydrogen bonding via 1H-NMR methods, a prospect that is virtually unknown in the study of PCET systems in electrochemistry, yet widely used in fields such as supramolecular chemistry. Initial studies involved the addition of Brønsted bases (amines and carboxylates) to hydroquinones (QH2's). The addition of the conjugate acids to quinone solutions were used to assist in the determination of the oxidation processes involved between the Brønsted bases and QH2's. Later work involved the study of systems that were initially believed to be less intricate in their oxidation/reduction than the quinone/hydroquinone system. The addition of amines (pyridine, triethylamine and diisopropylethylamine) to QH2's in acetonitrile involved a thermodynamic shift of the voltammetric peaks of QH2 to more negative oxidation potentials. This effect equates to the oxidation of QH2 being thermodynamically more facile in the presence of amines. Conjugate acids were also added to quinone, which resulted in a shift of the reduction peaks to more positive potentials. To assist in the determination of the oxidation process, the six pKa's of the quinone nine-membered square scheme were determined. 1H-NMR spectra and diffusion measurements also assisted in determining that none of the added species hydrogen bond with the hydroquinones or quinone. The observed oxidation process of the amines with the QH2's was determined to be a CEEC process. While the observed reduction process, due to the addition of the conjugate acids to quinone were found to proceed via an ECEC process without the influence of a hydrogen bond interaction between the conjugate acid and quinone. Addition of carboxylates (trifluoroacetate, benzoate and acetate) to QH2's in acetonitrile resulted in a similar thermodynamic shift to that found with addition of the amines. However, depending on the concentration of the added acetate and the QH2 being oxidized, either two or one oxidation peak(s) was found. Two acetate concentrations were studied, 10.0 mM and 30.0 mM acetate. From 1H-NMR spectra and diffusion measurements, addition of acetates to QH2 solutions causes the phenolic proton peak to shift from 6.35 ppm to as great as ~11 ppm, while the measured diffusion coefficient decreases by as much as 40 %, relative to the QH2 alone in deuterated acetonitrile (ACN-d3). From the phenolic proton peak shift caused by the titration of each of the acetates, either a 1:1 or 1:2 binding equation could be applied and the association constants could be determined. The oxidation process involved in the voltammetry of the QH2's with the acetates at both 10.0 and 30.0 mM was determined via voltammetric simulations. The oxidation process at 10.0 mM acetate concentrations involves a mixed process involving both oxidation of QH2 complexes and proton transfer from an intermediate radical species. However, at 30.0 mM acetate concentrations, the oxidation of QH2-acetate complexes was observed to involve an ECEC process. While on the reverse scan, or reduction, the process was determined to be an CECE process. Furthermore, the observed voltammetry was compared to that of the QH2's with amines. From this comparison it was determined that the presence of hydrogen bonds imparts a thermodynamic influence on the oxidation of QH2, where oxidation via a hydrogen bond mechanism is slightly easier. In order to understand the proton transfer process observed at 10.0 mM concentrations of acetate with 1,4-QH2 and also the transition from a hydrogen bond dominated oxidation to a proton transfer dominated oxidation, conjugate acids were added directly to QH2 and acetate solutions. Two different acetate/conjugate acid ratios were focused on for this study, one at 10.0 mM/25.0 mM and another at 30.0 mM/50.0 mM. The results of voltammetric and 1H-NMR studies were that addition of the conjugate acids effects a transition from a hydrogen bond oxidation to a proton transfer oxidation. The predominant oxidation species and proton acceptor under these conditions is the uncomplexed QH2 and the homoconjugate of the particular acetate being studied, respectively. Furthermore, voltammetry of QH2 in these solutions resembles that measured with the QH2's and added amines, as determined by scan rate analysis. In an attempt to understand a less intricate redox-active system under aqueous conditions, two viologen-like molecules were studied. These molecules, which involve a six-membered fence scheme reduction, were studied under buffered and unbuffered conditions. One of these molecules, N-methyl-4,4'-bipyridyl chloride (NMBC+), was observed to be reduced reversibly, while the other, 1-(4-pyridyl)pyridinium chloride (PPC+), involved irreversible reduction. The study of these molecules was accompanied by the study of a hypothetical four-membered square scheme redox system studied via digital simulations. In unbuffered solutions each species, both experimental and hypothetical, were observed to be reduced at either less negative (low pH) or more negative (high pH), depending on the formal potentials, pKa's of the particular species and solution pH. The presence of buffer components causes the voltammetric peaks to thermodynamically shift from a less negative potential (low pH buffer) to a more negative potential (high pH buffer). Both of these observations have been previously noted in the literature, however, there has been no mention, to our knowledge, of kinetic effects. In unbuffered solutions the reduction peaks were found to separate near the pKa,1. While in buffered solutions, there was a noted peak separation throughout the pH region defined by pKa's 1 and 2 (pKa,1 and pKa,2) of the species under study. The cause for this kinetic influence was the transition from a CE reduction at low pH to an EC reduction process at high pH in both buffered and unbuffered systems. This effect was further amplified via the study of the hypothetical species by decreasing the rate of proton transfer. In an effort to further this work, some preliminary work involving the attachment of acid/base species at the electrode surface and electromediated oxidation of phenol-acetate complexes has also been studied. The attachment of acid/base species at the surface is believed to assist in the observation of heterogeneous acid/base catalysis, similar to that observed in homogeneous acid/base additions to quinone/hydroquinone systems. Furthermore, our efforts to visualize a concerted mechanism are advanced in our future experiments involving electromediated oxidation of phenol-acetate complexes by inorganic species. It may be possible to interrogate the various intermediates more efficiently via homogeneous electron-proton transfer rather than heterogeneous electron transfer/homogeneous proton transfer.

The Development and Analysis of Model Systems to Probe Proton-Coupled Electron Transfer in Ribonucleotide Reductase Ia of E. Coli

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (995 download)

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Book Synopsis The Development and Analysis of Model Systems to Probe Proton-Coupled Electron Transfer in Ribonucleotide Reductase Ia of E. Coli by : Bon Jun Koo

Download or read book The Development and Analysis of Model Systems to Probe Proton-Coupled Electron Transfer in Ribonucleotide Reductase Ia of E. Coli written by Bon Jun Koo and published by . This book was released on 2016 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Proton-coupled electron transfer (PCET) combines proton transfer with electron transfer to bypass high-energy intermediates. The ribonucleotide reductase (RNR) family of enzymes catalyzes the conversion of ribonucleotides to deoxynucleotides using amino acid radicals. The enzyme contains an efficient PCET pathway that transfers an electron and proton over a 35 Å distance across two subunits, the longest PCET pathway known in biology. The enzyme func-tions with very high fidelity, performing >105 turnovers before radical loss.

Acid-base Catalysis in Proton-coupled Electron Transfer Reactions (pcet)

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (825 download)

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Book Synopsis Acid-base Catalysis in Proton-coupled Electron Transfer Reactions (pcet) by : Jonnathan Medina-Ramos

Download or read book Acid-base Catalysis in Proton-coupled Electron Transfer Reactions (pcet) written by Jonnathan Medina-Ramos and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: This thesis presents the results and discussion of the investigation of the effects of Brönsted bases on the kinetics and thermodynamics of two proton-coupled electron transfer processes: the mediated oxidation of glutathione and the electrochemical oxidation of hydroquinone. Proton-coupled electron transfer (PCET) is the name given to reactions that involve the transfer of electron(s) accompanied by the exchange of proton(s). PCETs are found in many chemical and biological processes, some of current technological relevance such as the oxygen reduction reaction in fuel cells, which involves the transfer of four electrons and four protons (4e-, 4H+); or the splitting of water into protons (4H+), electrons (4e- ) and oxygen (O2) efficiently achieved in photosynthesis. The study of PCET mechanisms is imperative to understanding biological processes as well as to developing more efficient technological applications. However, there are still many unanswered questions regarding the kinetic and thermodynamic performance of PCETs, and especially about the effect of different proton acceptors on the rate and mechanism of PCET reactions. This study aimed to investigate the effect of Brönsted bases as proton acceptors on the kinetics and thermodynamics of two model PCET processes, the oxidation of glutathione and hydroquinone. The analysis presented in this thesis provides insight into the influence of different proton acceptors on the mechanism of PCET and it does so by studying these reactions from a different angle, that one of the acid-base catalysis theory which has been successfully applied to the investigation of numerous chemical reactions coupled to proton transfer. We hope future research of PCETs can benefit from the knowledge of acid-base catalysis to better understand these reactions at a molecular level.

Advances in Chemical Physics, Volume 123

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Publisher : Wiley-Interscience
ISBN 13 : 9780471214533
Total Pages : 0 pages
Book Rating : 4.2/5 (145 download)

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Book Synopsis Advances in Chemical Physics, Volume 123 by : Ilya Prigogine

Download or read book Advances in Chemical Physics, Volume 123 written by Ilya Prigogine and published by Wiley-Interscience. This book was released on 2002-07-22 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The latest edition of the leading forum in chemical physics Edited by Nobel Prize winner Ilya Prigogine and renowned authority Stuart A. Rice. The Advances in Chemical Physics series provides a forum for critical, authoritative evaluations in every area of the discipline. In a format that encourages the expression of individual points of view, experts in the field present comprehensive analyses of subjects of interest. This stand-alone, special topics volume reports recent advances in electron-transfer research, with significant, up-to-date chapters by internationally recognized researchers. Volume 123 collects innovative papers on "Transition Path Sampling," "Dynamics of Chemical Reactions and Chaos," "The Role of Self Similarity in Renormalization Group Theory," and several other related topics. Advances in Chemical Physics remains the premier venue for presentations of new findings in its field.

Photoinitiated Proton-coupled Electron Transfer and Radical Transport Kinetics in Class la Ribonucleotide Reductase

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ISBN 13 :
Total Pages : 202 pages
Book Rating : 4.:/5 (867 download)

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Book Synopsis Photoinitiated Proton-coupled Electron Transfer and Radical Transport Kinetics in Class la Ribonucleotide Reductase by : Arturo Alejandro Pizano

Download or read book Photoinitiated Proton-coupled Electron Transfer and Radical Transport Kinetics in Class la Ribonucleotide Reductase written by Arturo Alejandro Pizano and published by . This book was released on 2013 with total page 202 pages. Available in PDF, EPUB and Kindle. Book excerpt: Proton-coupled electron transfer (PCET) is a critical mechanism in biology, underpinning key processes such as radical transport, energy transduction, and enzymatic substrate activation. Ribonucleotide reductases (RNRs) rely on PCET to mediate the rate-limiting step in the synthesis of DNA precursors. E. coli class Ia RNR consists of two dimeric subunits: [alpha]2 contains the active site, while [beta]2 contains a stable diferric-tyrosyl radical cofactor. During turnover, transport occurs over 35 Ȧ, from Y122 in [beta]2 to C439 in [alpha]2) where an active-site thiyl radical mediates turnover. Radical transport is proposed to occur over a series of highly conserved redox-active amino acids, including Y356 in [beta]2,and Y731 and Y730 in [alpha]2 . This thesis examines three subject areas of PCET that pertain to RNR: Small-molecule model systems provide insights into tyrosine oxidation and radical generation. Under physiological conditions, tyrosine oxidation is accompanied by deprotonation and occurs by PCET. A critical factor in PCET reactions is the nature ofthe proton acceptor and the presence ofhydrogen bonding. In a modular model system, pyridyl-amino acid-methyl esters are appended to rhenium(I) tricarbonyl phenanthroline to yield rhenium-amino acid complexes. In dichloromethane solution, bases coordinate to tyrosine by hydrogen bonding. Emission kinetics reveal base-dependent oxidation by PCET. A photopeptide composed of the 19 C-terminal residues of [beta]2, fluorinated tyrosine in place of Y356, and a rhenium(I) bipyridine photooxidant enables photoinitated radical transport into [alpha]2. Transient absorption kinetics show rapid radical transport (105 s-1) that is only observed when both Y731 and Y730, are present, suggesting a critical role for the Y731-Y730, dyad for radical transport in RNR. An intact, photochemical [beta]2 enables studies of an [alpha]2:[beta]2 complex. A bromomethylpyridine rhenium(I) phenanthroline photooxidant labels a single surface-cysteine mutant of [beta]2 at position 355 to yield [Re]- [beta]2. Under flash-quench conditions, transient absorption reveals a tyrosine radical. [Re] -[beta]2 binds [alpha]2 and is capable of light-initiated substrate turnover. Transient emission quenching experiments reveal Y356 oxidation that is dependent on the presence of Y731 in [alpha]2. This result suggests that a Y356-Y731-Y730 triad mediates radical transport across the subunit interface and into [alpha]2.

Mechanistic Studies of Proton-coupled Electron Transfer and Ligand Substitution Reactions in Biologically Relevant Systems

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ISBN 13 :
Total Pages : 156 pages
Book Rating : 4.:/5 (297 download)

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Book Synopsis Mechanistic Studies of Proton-coupled Electron Transfer and Ligand Substitution Reactions in Biologically Relevant Systems by : David Sarauli

Download or read book Mechanistic Studies of Proton-coupled Electron Transfer and Ligand Substitution Reactions in Biologically Relevant Systems written by David Sarauli and published by . This book was released on 2008 with total page 156 pages. Available in PDF, EPUB and Kindle. Book excerpt: