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The Development And Application Of Multi Omics Integration Approaches To Dissecting Complex Traits In Plants
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Book Synopsis The Development and Application of Multi-Omics Integration Approaches to Dissecting Complex Traits in Plants by : Shang-Qian Xie
Download or read book The Development and Application of Multi-Omics Integration Approaches to Dissecting Complex Traits in Plants written by Shang-Qian Xie and published by Frontiers Media SA. This book was released on 2022-05-06 with total page 342 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Application of multi-omics to important traits of ornamental and beverage plants by : Tangchun Zheng
Download or read book Application of multi-omics to important traits of ornamental and beverage plants written by Tangchun Zheng and published by Frontiers Media SA. This book was released on 2023-07-04 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Sorghum and Pearl Millet as Climate Resilient Crops for Food and Nutrition Security by : Mahalingam Govindaraj
Download or read book Sorghum and Pearl Millet as Climate Resilient Crops for Food and Nutrition Security written by Mahalingam Govindaraj and published by Frontiers Media SA. This book was released on 2022-10-03 with total page 472 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Advances in Statistical Methods for the Genetic Dissection of Complex Traits in Plants by : Yuan-Ming Zhang
Download or read book Advances in Statistical Methods for the Genetic Dissection of Complex Traits in Plants written by Yuan-Ming Zhang and published by Frontiers Media SA. This book was released on 2024-01-26 with total page 278 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genome-wide association studies (GWAS) have been widely used in the genetic dissection of complex traits. However, there are still limits in current GWAS statistics. For example, (1) almost all the existing methods do not estimate additive and dominance effects in quantitative trait nucleotide (QTN) detection; (2) the methods for detecting QTN-by-environment interaction (QEI) are not straightforward and do not estimate additive and dominance effects as well as additive-by-environment and dominance-by-environment interaction effects, leading to unreliable results; and (3) no or too simple polygenic background controls have been employed in QTN-by-QTN interaction (QQI) detection. As a result, few studies of QEI and QQI for complex traits have been reported based on multiple-environment experiments. Recently, new statistical tools, including 3VmrMLM, have been developed to address these needs in GWAS. In 3VmrMLM, all the trait-associated effects, including QTN, QEI and QQI related effects, are compressed into a single effect-related vector, while all the polygenic backgrounds are compressed into a single polygenic effect matrix. These compressed parameters can be accurately and efficiently estimated through a unified mixed model analysis. To further validate these new GWAS methods, particularly 3VmrMLM, they should be rigorously tested in real data of various plants and a wide range of other species.
Book Synopsis Bioinformatics for agriculture: High-throughput approaches by : Atul Kumar Upadhyay
Download or read book Bioinformatics for agriculture: High-throughput approaches written by Atul Kumar Upadhyay and published by Springer Nature. This book was released on 2021-03-19 with total page 160 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book illustrates the importance and significance of bioinformatics in the field of agriculture. It first introduces the basic concepts of bioinformatics, such as homologous sequence and gene function analyses, determination of protein structures, and discusses machine learning applications for an in-depth understanding of the desired genes and proteins based on commonly used bioinformatics software and tools, e.g. BLAST, molecular modelling, molecular-docking and simulations, protein-protein and domain-domain interactions. The book also describes recent advances in the high-throughput analysis of whole genome and transcriptome using next-generation sequencing platforms, and functional proteome studies. It also examines the role of computational biology in understanding and improving the nutrient quality and yield of crops. Lastly, the book explores a comprehensive list of applications of bioinformatics to improve plant yield, biomass, and health, and the challenges involved.
Book Synopsis Evolution of Translational Omics by : Institute of Medicine
Download or read book Evolution of Translational Omics written by Institute of Medicine and published by National Academies Press. This book was released on 2012-09-13 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Technologies collectively called omics enable simultaneous measurement of an enormous number of biomolecules; for example, genomics investigates thousands of DNA sequences, and proteomics examines large numbers of proteins. Scientists are using these technologies to develop innovative tests to detect disease and to predict a patient's likelihood of responding to specific drugs. Following a recent case involving premature use of omics-based tests in cancer clinical trials at Duke University, the NCI requested that the IOM establish a committee to recommend ways to strengthen omics-based test development and evaluation. This report identifies best practices to enhance development, evaluation, and translation of omics-based tests while simultaneously reinforcing steps to ensure that these tests are appropriately assessed for scientific validity before they are used to guide patient treatment in clinical trials.
Book Synopsis Omics in Plant Breeding by : Aluízio Borém
Download or read book Omics in Plant Breeding written by Aluízio Borém and published by John Wiley & Sons. This book was released on 2014-06-03 with total page 253 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational and high-throughput methods, such as genomics, proteomics, and transcriptomics, known collectively as “-omics,” have been used to study plant biology for well over a decade now. As these technologies mature, plant and crop scientists have started using these methods to improve crop varieties. Omics in Plant Breeding provides a timely introduction to key omicsbased methods and their application in plant breeding. Omics in Plant Breeding is a practical and accessible overview of specific omics-based methods ranging from metabolomics to phenomics. Covering a single methodology within each chapter, this book provides thorough coverage that ensures a strong understanding of each methodology both in its application to, and improvement of, plant breeding. Accessible to advanced students, researchers, and professionals, Omics in Plant Breeding will be an essential entry point into this innovative and exciting field. • A valuable overview of high-throughput, genomics-based technologies and their applications to plant breeding • Each chapter explores a single methodology, allowing for detailed and thorough coverage • Coverage ranges from well-established methodologies, such as genomics and proteomics, to emerging technologies, including phenomics and physionomics Aluízio Borém is a Professor of Plant Breeding at the University of Viçosa in Brazil. Roberto Fritsche-Neto is a Professor of Genetics and Plant Breeding at the University of São Paulo in Brazil.
Book Synopsis Forest Genomics and Biotechnology by : Isabel Allona
Download or read book Forest Genomics and Biotechnology written by Isabel Allona and published by Frontiers Media SA. This book was released on 2019-11-27 with total page 185 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Research Topic addresses research in genomics and biotechnology to improve the growth and quality of forest trees for wood, pulp, biorefineries and carbon capture. Forests are the world’s greatest repository of terrestrial biomass and biodiversity. Forests serve critical ecological services, supporting the preservation of fauna and flora, and water resources. Planted forests also offer a renewable source of timber, for pulp and paper production, and the biorefinery. Despite their fundamental role for society, thousands of hectares of forests are lost annually due to deforestation, pests, pathogens and urban development. As a consequence, there is an increasing need to develop trees that are more productive under lower inputs, while understanding how they adapt to the environment and respond to biotic and abiotic stress. Forest genomics and biotechnology, disciplines that study the genetic composition of trees and the methods required to modify them, began over a quarter of a century ago with the development of the first genetic maps and establishment of early methods of genetic transformation. Since then, genomics and biotechnology have impacted all research areas of forestry. Genome analyses of tree populations have uncovered genes involved in adaptation and response to biotic and abiotic stress. Genes that regulate growth and development have been identified, and in many cases their mechanisms of action have been described. Genetic transformation is now widely used to understand the roles of genes and to develop germplasm that is more suitable for commercial tree plantations. However, in contrast to many annual crops that have benefited from centuries of domestication and extensive genomic and biotechnology research, in forestry the field is still in its infancy. Thus, tremendous opportunities remain unexplored. This Research Topic aims to briefly summarize recent findings, to discuss long-term goals and to think ahead about future developments and how this can be applied to improve growth and quality of forest trees.
Book Synopsis Microbial Communities and Functions Contribute to Plant Performance Under Various Stresses by : Hui Li
Download or read book Microbial Communities and Functions Contribute to Plant Performance Under Various Stresses written by Hui Li and published by Frontiers Media SA. This book was released on 2022-12-02 with total page 339 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Plants' Responses to Novel Environmental Pressures by : Alessio Fini
Download or read book Plants' Responses to Novel Environmental Pressures written by Alessio Fini and published by Frontiers Media SA. This book was released on 2018-02-01 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plants have been exposed to multiple environmental stressors on long-term (seasonal) and short-term (daily) basis since their appearance on land. However, the frequency and the intensity of stress events have increased much during the last three decades because of climate change. Plants have developed, however, a multiplicity of modular and highly integrated strategies to cope with challenges imposed by novel, usually harsher environments. These strategies include migration, acclimation and adaptation. Twelve articles in this research topic exactly focus on the relative significance of these response mechanisms for the successful acclimation of plants to a wide range of novel environmental pressures. Four articles , additionally, explore how plants respond to severe stress conditions resulting from the concurrent action of multiple stressors. Ten articles mostly examine how morpho-anatomical, physiological and biochemical-related traits integrate when plants suffer from ‘novel’ threats, such as solid, gaseous, and electromagnetic pollutants. Suitable physiological indicators for developing conservation strategies are described in the last two works. This research topic highlights that bottom-up, as well as, top-down approaches will be necessary to develop in near future in the study of plants´ responses to environmental pressures.
Book Synopsis Neglected and Underutilized Crop Species for Sustainable Food and Nutritional Security: Prospects and Hidden Potential by : Omena Bernard Ojuederie
Download or read book Neglected and Underutilized Crop Species for Sustainable Food and Nutritional Security: Prospects and Hidden Potential written by Omena Bernard Ojuederie and published by Frontiers Media SA. This book was released on 2024-01-23 with total page 151 pages. Available in PDF, EPUB and Kindle. Book excerpt: Global demand for food is rising as a result of increases in the global population as well as dietary changes. Furthermore, climate change exerts additional pressure on the food supply, adversely affecting sustainable food production. Increased temperatures and drought stresses coupled with the migration of pests limit crop yields and affect their nutritional quality. Many staple crops are unable to adapt to these changing climatic conditions. To achieve the Sustainable Development Goals of the United Nation to end hunger and promote good health and well-being, concerted efforts need to be made to enhance food production while mitigating the effects of climate change through the promotion of climate-smart agricultural practices and the utilization of neglected and underutilized crop species. These species can be highly nutritious and well-adapted to different agroecologies and climatic conditions, meaning that they offer the possibility of improving food and nutritional security.
Book Synopsis Omics in Horticultural Crops by : Gyana Ranjan Rout
Download or read book Omics in Horticultural Crops written by Gyana Ranjan Rout and published by Academic Press. This book was released on 2022-07-16 with total page 664 pages. Available in PDF, EPUB and Kindle. Book excerpt: Omics in Horticulture Crops presents a comprehensive view of germplasm diversity, genetic evolution, genomics, proteomics and transcriptomics of fruit crops (temperate, tropical and subtropical fruits, fruit nuts, berries), vegetables, tuberous crops, ornamental and floricultural crops and medicinal aromatic plants. Information covering phenomics, genetic diversity, phylogenetic studies, genome sequencing, and genome barcoding through the utilization of molecular markers plays an imperative role in the characterization and effective utilization of diverse germplasm are included in the book. This is a valuable reference for researchers and academics seeking to improve cultivar productivity through enhanced genetic diversity while also retaining optimal traits and protecting the growing environment. - Highlights perspectives, progress and promises of -omics application - Provides a systematic overview of origin, progenitor and domestication process as well as genetic insights - Includes full range of horticultural crops
Book Synopsis Plant Breeding: Past, Present and Future by : John E. Bradshaw
Download or read book Plant Breeding: Past, Present and Future written by John E. Bradshaw and published by Springer. This book was released on 2016-03-08 with total page 710 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to help plant breeders by reviewing past achievements, currently successful practices, and emerging methods and techniques. Theoretical considerations are also presented to strike the right balance between being as simple as possible but as complex as necessary. The United Nations predicts that the global human population will continue rising to 9.0 billion by 2050. World food production will need to increase between 70-100 per cent in just 40 years. First generation bio-fuels are also using crops and cropland to produce energy rather than food. In addition, land area used for agriculture may remain static or even decrease as a result of degradation and climate change, despite more land being theoretically available, unless crops can be bred which tolerate associated abiotic stresses. Lastly, it is unlikely that steps can be taken to mitigate all of the climate change predicted to occur by 2050, and beyond, and hence adaptation of farming systems and crop production will be required to reduce predicted negative effects on yields that will occur without crop adaptation. Substantial progress will therefore be required in bridging the yield gap between what is currently achieved per unit of land and what should be possible in future, with the best farming methods and best storage and transportation of food, given the availability of suitably adapted cultivars, including adaptation to climate change. My book is divided into four parts: Part I is an historical introduction; Part II deals with the origin of genetic variation by mutation and recombination of DNA; Part III explains how the mating system of a crop species determines the genetic structure of its landraces; Part IV considers the three complementary options for future progress: use of sexual reproduction in further conventional breeding, base broadening and introgression; mutation breeding; and genetically modified crops.
Book Synopsis Omics Technologies for Sustainable Agriculture and Global Food Security (Vol II) by : Anirudh Kumar
Download or read book Omics Technologies for Sustainable Agriculture and Global Food Security (Vol II) written by Anirudh Kumar and published by Springer Nature. This book was released on 2021-08-05 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: This edited book brings out a comprehensive collection of information on the modern omics-based research. The main focus of this book is to educate researchers about utility of omics-based technologies in rapid crop improvement. In last two decades, omics technologies have been utilized significantly in the area of plant sciences and has shown promising results. Omics technology has potential to address the challenge of food security in the near future. The comprehensive use of omics technology occurred in last two decades and helped greatly in the understanding of complex biological problems, improve crop productivity and ensure sustainable use of ecosystem services. This book is of interest to researchers and students of life sciences, biotechnology, plant biotechnology, agriculture, forestry, and environmental sciences. It is also a useful knowledge resource for national and international agricultural scientists.
Book Synopsis Marker-Assisted Selection (MAS) in Crop Plants, volume II by : Ting Peng
Download or read book Marker-Assisted Selection (MAS) in Crop Plants, volume II written by Ting Peng and published by Frontiers Media SA. This book was released on 2024-06-13 with total page 307 pages. Available in PDF, EPUB and Kindle. Book excerpt: Global climate change, reductions in arable land, and food security demands that plant breeding will continue to play an imperative role in feeding 9 billion people sustainably by 2050. In order to face this challenge, modern plant breeding will necessitate the adoption of new technologies and practices to boost production of cultivated plants by capturing or generating more favorable genetic diversity. In crop plants, the majority of agronomically important traits are quantitatively inherited, controlled by multiple genes each with a small effect (quantitative trait loci, QTLs). The most common approach to pre-breeding is to use genetic mapping to identify QTLs for key phenotypic variation followed by introgressing those QTLs into the elite gene pool with marker-assisted selection (MAS), which can enhance the selection criteria of phenotypes comparing to conventional breeding with the selection of genes. As the cost of genotyping continues to decline, the use of genotyping-by-sequencing (GBS) technologies or whole genome re-sequencing, coupled with the release of the genome sequences of plant species have permitted the development of dense arrays of single nucleotide polymorphisms (SNPs) covering the entire genome, which have in turn paved the way to genome-wide association studies (GWAS). Meanwhile, fine mapping guided by genome sequences of many plant species have facilitated the exploration of functional genes; in addition, pan-genomes constructed from various available resources such as the reference sequence and its variants, raw reads and haplotype reference panels provide a new perspective on QTL locations and potential molecular targets for plant breeding. Similarly, new approaches to marker-trait association analyses such as quantitative trait locus sequencing (QTL-seq) and quantitative trait gene sequencing (QTG-seq) that are based on bulked-segregant analysis (BSA) and whole-genome resequencing will help accelerate QTL fine-mapping and identification of the causal genes. In conclusion, the tools and strategies for MAS in modern plant breeding have been expanding in recent years. By embracing a broad array of conventional and new molecular techniques, modern plant breeding has a bright future in delivering new crop cultivars to keep our food, fiber and biobased economy diverse and safe.
Book Synopsis Abiotic Stress: Molecular Genetics and Genomics by : Mukesh Jain
Download or read book Abiotic Stress: Molecular Genetics and Genomics written by Mukesh Jain and published by Frontiers E-books. This book was released on 2014-12-03 with total page 102 pages. Available in PDF, EPUB and Kindle. Book excerpt: Abiotic stresses are the major cause that limits productivity of crop plants worldwide. Plants have developed intricate machinery to respond and adapt over these adverse environmental conditions both at physiological and molecular levels. Due to increasing problems of abiotic stresses, plant biotechnologists and breeders need to employ new approaches to improve abiotic stress tolerance in crop plants. Although current research has divulged several key genes, gene regulatory networks and quantitative trait loci that mediate plant responses to various abiotic stresses, the comprehensive understanding of this complex trait is still not available. This e-book is focused on molecular genetics and genomics approaches to understand the plant response/adaptation to various abiotic stresses. It includes different types of articles (original research, method, opinion and review) that provide current insights into different aspects of plant responses and adaptation to abiotic stresses.
Book Synopsis Plant Metabolomics by : Kazuki Saito
Download or read book Plant Metabolomics written by Kazuki Saito and published by Springer Science & Business Media. This book was released on 2006-06-29 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: Metabolomics – which deals with all metabolites of an organism – is a rapidly-emerging sector of post-genome research fields. It plays significant roles in a variety of fields from medicine to agriculture and holds a fundamental position in functional genomics studies and their application in plant biotechnology. This volume comprehensively covers plant metabolomics for the first time. The chapters offer cutting-edge information on analytical technology, bioinformatics and applications. They were all written by leading researchers who have been directly involved in plant metabolomics research throughout the world. Up-to-date information and future developments are described, thereby producing a volume which is a landmark of plant metabolomics research and a beneficial guideline to graduate students and researchers in academia, industry, and technology transfer organizations in all plant science fields.
