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Author : Luke J. Harmon
Publisher :
ISBN 13 : 9781719584463
Total Pages : 286 pages
Book Rating : 4.5/5 (844 download)
Download or read book Phylogenetic Comparative Methods written by Luke J. Harmon and published by . This book was released on 2018-05-23 with total page 286 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to statistical analyses of phylogenetic trees using comparative methods.
Author : Liam J. Revell
Publisher : Princeton University Press
ISBN 13 : 0691219044
Total Pages : 441 pages
Book Rating : 4.6/5 (912 download)
Download or read book Phylogenetic Comparative Methods in R written by Liam J. Revell and published by Princeton University Press. This book was released on 2022-07-12 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: An authoritative introduction to the latest comparative methods in evolutionary biology Phylogenetic comparative methods are a suite of statistical approaches that enable biologists to analyze and better understand the evolutionary tree of life, and shed vital new light on patterns of divergence and common ancestry among all species on Earth. This textbook shows how to carry out phylogenetic comparative analyses in the R statistical computing environment. Liam Revell and Luke Harmon provide an incisive conceptual overview of each method along with worked examples using real data and challenge problems that encourage students to learn by doing. By working through this book, students will gain a solid foundation in these methods and develop the skills they need to interpret patterns in the tree of life. Covers every major method of modern phylogenetic comparative analysis in R Explains the basics of R and discusses topics such as trait evolution, diversification, trait-dependent diversification, biogeography, and visualization Features a wealth of exercises and challenge problems Serves as an invaluable resource for students and researchers, with applications in ecology, evolution, anthropology, disease transmission, conservation biology, and a host of other areas Written by two of today’s leading developers of phylogenetic comparative methods
Author : Jorge CRISCI
Publisher : Harvard University Press
ISBN 13 : 0674030044
Total Pages : 263 pages
Book Rating : 4.6/5 (74 download)
Download or read book Historical Biogeography written by Jorge CRISCI and published by Harvard University Press. This book was released on 2009-06-30 with total page 263 pages. Available in PDF, EPUB and Kindle. Book excerpt: Though biogeography may be simply defined--the study of the geographic distributions of organisms--the subject itself is extraordinarily complex, involving a range of scientific disciplines and a bewildering diversity of approaches. For convenience, biogeographers have recognized two research traditions: ecological biogeography and historical biogeography. This book makes sense of the profound revolution that historical biogeography has undergone in the last two decades, and of the resulting confusion over its foundations, basic concepts, methods, and relationships to other disciplines of comparative biology. Using case studies, the authors explain and illustrate the fundamentals and the most frequently used methods of this discipline. They show the reader how to tell when a historical biogeographic approach is called for, how to decide what kind of data to collect, how to choose the best method for the problem at hand, how to perform the necessary calculations, how to choose and apply a computer program, and how to interpret results.
Author : László Zsolt Garamszegi
Publisher : Springer
ISBN 13 : 3662435500
Total Pages : 553 pages
Book Rating : 4.6/5 (624 download)
Download or read book Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology written by László Zsolt Garamszegi and published by Springer. This book was released on 2014-07-29 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetic comparative approaches are powerful analytical tools for making evolutionary inferences from interspecific data and phylogenies. The phylogenetic toolkit available to evolutionary biologists is currently growing at an incredible speed, but most methodological papers are published in the specialized statistical literature and many are incomprehensible for the user community. This textbook provides an overview of several newly developed phylogenetic comparative methods that allow to investigate a broad array of questions on how phenotypic characters evolve along the branches of phylogeny and how such mechanisms shape complex animal communities and interspecific interactions. The individual chapters were written by the leading experts in the field and using a language that is accessible for practicing evolutionary biologists. The authors carefully explain the philosophy behind different methodologies and provide pointers – mostly using a dynamically developing online interface – on how these methods can be implemented in practice. These “conceptual” and “practical” materials are essential for expanding the qualification of both students and scientists, but also offer a valuable resource for educators. Another value of the book are the accompanying online resources (available at: http://www.mpcm-evolution.com), where the authors post and permanently update practical materials to help embed methods into practice.
Author : Günter P. Wagner
Publisher : Princeton University Press
ISBN 13 : 0691180679
Total Pages : 494 pages
Book Rating : 4.6/5 (911 download)
Download or read book Homology, Genes, and Evolutionary Innovation written by Günter P. Wagner and published by Princeton University Press. This book was released on 2018-07-10 with total page 494 pages. Available in PDF, EPUB and Kindle. Book excerpt: A major synthesis of homology, written by a top researcher in the field Homology—a similar trait shared by different species and derived from common ancestry, such as a seal's fin and a bird’s wing—is one of the most fundamental yet challenging concepts in evolutionary biology. This groundbreaking book provides the first mechanistically based theory of what homology is and how it arises in evolution. Günter Wagner, one of the preeminent researchers in the field, argues that homology, or character identity, can be explained through the historical continuity of character identity networks—that is, the gene regulatory networks that enable differential gene expression. He shows how character identity is independent of the form and function of the character itself because the same network can activate different effector genes and thus control the development of different shapes, sizes, and qualities of the character. Demonstrating how this theoretical model can provide a foundation for understanding the evolutionary origin of novel characters, Wagner applies it to the origin and evolution of specific systems, such as cell types; skin, hair, and feathers; limbs and digits; and flowers. The first major synthesis of homology to be published in decades, Homology, Genes, and Evolutionary Innovation reveals how a mechanistically based theory can serve as a unifying concept for any branch of science concerned with the structure and development of organisms, and how it can help explain major transitions in evolution and broad patterns of biological diversity.
Author : Serge Morand
Publisher : Cambridge University Press
ISBN 13 : 1107037654
Total Pages : 503 pages
Book Rating : 4.1/5 (7 download)
Download or read book Parasite Diversity and Diversification written by Serge Morand and published by Cambridge University Press. This book was released on 2015-02-26 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: By joining phylogenetics and evolutionary ecology, this book explores the patterns of parasite diversity while revealing diversification processes.
Author : David A. Baum
Publisher : Roberts
ISBN 13 : 9781936221165
Total Pages : 0 pages
Book Rating : 4.2/5 (211 download)
Download or read book Tree Thinking: An Introduction to Phylogenetic Biology written by David A. Baum and published by Roberts. This book was released on 2012-08-10 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Baum and Smith, both professors evolutionary biology and researchers in the field of systematics, present this highly accessible introduction to phylogenetics and its importance in modern biology. Ever since Darwin, the evolutionary histories of organisms have been portrayed in the form of branching trees or “phylogenies.” However, the broad significance of the phylogenetic trees has come to be appreciated only quite recently. Phylogenetics has myriad applications in biology, from discovering the features present in ancestral organisms, to finding the sources of invasive species and infectious diseases, to identifying our closest living (and extinct) hominid relatives. Taking a conceptual approach, Tree Thinking introduces readers to the interpretation of phylogenetic trees, how these trees can be reconstructed, and how they can be used to answer biological questions. Examples and vivid metaphors are incorporated throughout, and each chapter concludes with a set of problems, valuable for both students and teachers. Tree Thinking is must-have textbook for any student seeking a solid foundation in this fundamental area of evolutionary biology.
Author : Santiago Herrera
Publisher : Frontiers Media SA
ISBN 13 : 2889760693
Total Pages : 336 pages
Book Rating : 4.8/5 (897 download)
Download or read book 7th International Symposium on Deep-Sea Corals written by Santiago Herrera and published by Frontiers Media SA. This book was released on 2022-05-03 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Emmanuel Paradis
Publisher : Springer Science & Business Media
ISBN 13 : 0387351000
Total Pages : 221 pages
Book Rating : 4.3/5 (873 download)
Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis and published by Springer Science & Business Media. This book was released on 2006-11-25 with total page 221 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.
Author : Steven L. Salzberg
Publisher : Springer Science & Business Media
ISBN 13 : 3642042406
Total Pages : 440 pages
Book Rating : 4.6/5 (42 download)
Download or read book Algorithms in Bioinformatics written by Steven L. Salzberg and published by Springer Science & Business Media. This book was released on 2009-08-28 with total page 440 pages. Available in PDF, EPUB and Kindle. Book excerpt: These proceedings contain papers from the 2009 Workshop on Algorithms in Bioinformatics (WABI), held at the University of Pennsylvania in Philadelphia, Pennsylvania during September 12–13, 2009. WABI 2009 was the ninth annual conference in this series, which focuses on novel algorithms that address imp- tantproblemsingenomics,molecularbiology,andevolution.Theconference- phasizes research that describes computationally e?cient algorithms and data structures that have been implemented and tested in simulations and on real data. WABI is sponsored by the European Association for Theoretical C- puter Science (EATCS) and the International Society for Computational Bi- ogy (ISCB). WABI 2009 was supported by the Penn Genome Frontiers Institute and the Penn Center for Bioinformatics at the University of Pennsylvania. For the 2009 conference, 90 full papers were submitted for review by the Program Committee, and from this strong ?eld of submissions, 34 papers were chosen for presentation at the conference and publication in the proceedings. The ?nal programcovered a wide range of topics including gene interaction n- works, molecular phylogeny, RNA and protein structure, and genome evolution.
Author : Quentin C.B. Cronk
Publisher : CRC Press
ISBN 13 : 9781420024982
Total Pages : 568 pages
Book Rating : 4.0/5 (249 download)
Download or read book Developmental Genetics and Plant Evolution written by Quentin C.B. Cronk and published by CRC Press. This book was released on 2004-01-29 with total page 568 pages. Available in PDF, EPUB and Kindle. Book excerpt: A benchmark text, Developmental Genetics and Plant Evolution integrates the recent revolution in the molecular-developmental genetics of plants with mainstream evolutionary thought. It reflects the increasing cooperation between strongly genomics-influenced researchers, with their strong grasp of technology, and evolutionary morphogenetists and sys
Author : Joel Cracraft
Publisher : Oxford University Press
ISBN 13 : 0199729603
Total Pages : 592 pages
Book Rating : 4.1/5 (997 download)
Download or read book Assembling the Tree of Life written by Joel Cracraft and published by Oxford University Press. This book was released on 2004-07-22 with total page 592 pages. Available in PDF, EPUB and Kindle. Book excerpt: This edited volume is provides an authoritative synthesis of knowledge about the history of life. All the major groups of organisms are treated, by the leading workers in their fields. With sections on: The Importance of Knowing the Tree of Life; The Origin and Radiation of Life on Earth; The Relationships of Green Plants; The Relationships of Fungi; and The Relationships of Animals. This book should prove indispensable for evolutionary biologists, taxonomists, ecologists interested in biodiversity, and as a baseline sourcebook for organismic biologists, botanists, and microbiologists. An essential reference in this fundamental area.
Author : Knut Schmidt-Nielsen
Publisher : Cambridge University Press
ISBN 13 : 9780521096928
Total Pages : 128 pages
Book Rating : 4.0/5 (969 download)
Download or read book How Animals Work written by Knut Schmidt-Nielsen and published by Cambridge University Press. This book was released on 1972-06-30 with total page 128 pages. Available in PDF, EPUB and Kindle. Book excerpt: A study of comparative physiology that explains the ways in which specific bodily systems function in different species.
Author : Wiens Jj
Publisher : Smithsonian
ISBN 13 : 9781560988168
Total Pages : 220 pages
Book Rating : 4.9/5 (881 download)
Download or read book PHYLOGENETIC ANALYSIS MORPH PB written by Wiens Jj and published by Smithsonian. This book was released on 2000-06-17 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : O. R. P. Bininda-Emonds
Publisher : Springer Science & Business Media
ISBN 13 : 9781402023293
Total Pages : 568 pages
Book Rating : 4.0/5 (232 download)
Download or read book Phylogenetic Supertrees written by O. R. P. Bininda-Emonds and published by Springer Science & Business Media. This book was released on 2004-08-25 with total page 568 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first book on "phylogenetic supertrees", a recent, but controversial development for inferring evolutionary trees. Rather than analyze the combined primary character data directly, supertree construction proceeds by combining the tree topologies derived from those data. This difference in strategy has allowed for the exciting possibility of larger, more complete phylogenies than are otherwise currently possible, with the potential to revolutionize evolutionarily-based research. This book provides a comprehensive look at supertrees, ranging from the methods used to build supertrees to the significance of supertrees to bioinformatic and biological research. Reviews of many the major supertree methods are provided and four new techniques, including a Bayesian implementation of supertrees, are described for the first time. The far-reaching impact of supertrees on biological research is highlighted both in general terms and through specific examples from diverse clades such as flowering plants, even-toed ungulates, and primates. The book also critically examines the many outstanding challenges and problem areas for this relatively new field, showing the way for supertree construction in the age of genomics. Interdisciplinary contributions from the majority of the leading authorities on supertree construction in all areas of the bioinformatic community (biology, computer sciences, and mathematics) will ensure that this book is a valuable reference with wide appeal to anyone interested in phylogenetic inference.
Author : Emília P. Martins
Publisher : Oxford University Press, USA
ISBN 13 : 0195092104
Total Pages : 429 pages
Book Rating : 4.1/5 (95 download)
Download or read book Phylogenies and the Comparative Method in Animal Behavior written by Emília P. Martins and published by Oxford University Press, USA. This book was released on 1996 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the last ten years, the "comparative method" has been revolutionized by modern statistical ways of incorporating phylogenies into the design and analysis of comparative studies. The results of this revolution are particularly important in the study of animal behavior, which has relied on interspecific comparisons to infer universal trends and evolutionary patterns. The chapters of this edited volume consider the impact of modern phylogenetic comparative methods on the study of animal behavior and discuss the main issues that need to be considered in design and analysis of a comparative study, considers possible differences between the evolution of behavior and the evolution of morphology, and reviews how phylogenetic comparative studies have been used in certain areas of behavioral research.
Author : Joel W. Martin
Publisher : CRC Press
ISBN 13 : 1420092596
Total Pages : 634 pages
Book Rating : 4.4/5 (2 download)
Download or read book Decapod Crustacean Phylogenetics written by Joel W. Martin and published by CRC Press. This book was released on 2016-04-19 with total page 634 pages. Available in PDF, EPUB and Kindle. Book excerpt: Decapod crustaceans are of tremendous interest and importance evolutionarily, ecologically, and economically. There is no shortage of publications reflecting the wide variety of ideas and hypotheses concerning decapod phylogeny, but until recently, the world's leading decapodologists had never assembled to elucidate and discuss relationships among
