Structure and Hydrogen Bond Dynamics of Water-Dimethyl Sulfoxide Mixtures by Computer Simulations

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ISBN 13 :
Total Pages : 3 pages
Book Rating : 4.:/5 (227 download)

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Book Synopsis Structure and Hydrogen Bond Dynamics of Water-Dimethyl Sulfoxide Mixtures by Computer Simulations by :

Download or read book Structure and Hydrogen Bond Dynamics of Water-Dimethyl Sulfoxide Mixtures by Computer Simulations written by and published by . This book was released on 1993 with total page 3 pages. Available in PDF, EPUB and Kindle. Book excerpt: We have used two different force field models to study concentrated dimethyl sulfoxide (DMSO)-water solutions by molecular dynamics. The results of these simulations are shown to compare well with recent neutron diffraction experiments using H/D isotope substitution A.K. Soper and A. Luzar, J. Chem. Phys. 97, 1320 (1992). Even for the highly concentrated 1DMSO : 2H2O solution, the water hydrogen-hydrogen radial distribution function, gHH(r), exhibits the characteristic tetrahedral ordering of water-water hydrogen bonds. Structural information is, further obtained from various partial atom-atom distribution functions, not accessible experimentally. The behavior of water radial distribution functions, goo(r) and goH(r) indicate that the nearest neighbor correlations among remaining water molecules in the mixture increase with increasing DMSO concentration. No preferential association of methyl groups on DMSO is detected. The pattern of hydrogen bonding and the distribution of hydrogen bond lifetimes in the simulated mixtures is further investigated. Molecular dynamics results show that DMSO typically forms two hydrogen bonds with water molecules. Hydrogen bonds between DMSO and water molecules are longer lived than water-water hydrogen bonds. The hydrogen bond lifetimes determined by reactive flux correlation function approach are about 5 ps and 3 ps for water- DMSO and water-water pairs, respectively, in 1DMSO: 2H20 Mixture. In contrast, for pure water, the hydrogen bond lifetime is about 1 ps. We discuss these times in light of experimentally determined rotational relaxation times. The relative values of the hydrogen bond lifetimes are consistent with a statistical (i.e., transition state theory) interpretation.

Structure and Dynamics of Solutions

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Publisher : Elsevier
ISBN 13 : 1483291421
Total Pages : 361 pages
Book Rating : 4.4/5 (832 download)

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Book Synopsis Structure and Dynamics of Solutions by : H. Ohtaki

Download or read book Structure and Dynamics of Solutions written by H. Ohtaki and published by Elsevier. This book was released on 2013-10-22 with total page 361 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in the study of structural and dynamic properties of solutions have provided a molecular picture of solute-solvent interactions. Although the study of thermodynamic as well as electronic properties of solutions have played a role in the development of research on the rate and mechanism of chemical reactions, such macroscopic and microscopic properties are insufficient for a deeper understanding of fast chemical and biological reactions. In order to fill the gap between the two extremes, it is necessary to know how molecules are arranged in solution and how they change their positions in both the short and long range. This book has been designed to meet these criteria. It is possible to develop a sound microscopic picture for reaction dynamics in solution without molecular-level knowledge of how reacting ionic or neutral species are solvated and how rapidly the molecular environment is changing with time. A variety of actual examples is given as to how and when modern molecular approaches can be used to solve specific solution problems. The following tools are discussed: x-ray and neutron diffraction, EXAFS, and XANES, molecular dynamics and Monte Carlo computer simulations, Raman, infrared, NMR, fluorescence, and photoelectron emission spectroscopic methods, conductance and viscosity measurements, high pressure techniques, and statistical mechanics methods. Static and dynamic properties of ionic solvation, molecular solvation, ion-pair formation, ligand exchange reactions, and typical organic solvents are useful for bridging the gap between classical thermodynamic studies and modern single-molecule studies in the gas phase. The book will be of interest to solution, physical, inorganic, analytical and structural chemists as well as to chemical kineticists.

Water in Biological and Chemical Processes

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Publisher : Cambridge University Press
ISBN 13 : 1107037298
Total Pages : 383 pages
Book Rating : 4.1/5 (7 download)

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Book Synopsis Water in Biological and Chemical Processes by : Biman Bagchi

Download or read book Water in Biological and Chemical Processes written by Biman Bagchi and published by Cambridge University Press. This book was released on 2013-11-14 with total page 383 pages. Available in PDF, EPUB and Kindle. Book excerpt: A unified overview of the dynamical properties of water and its unique and diverse role in biological and chemical processes.

Structure And Dynamics Of Constrained Water

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (656 download)

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Book Synopsis Structure And Dynamics Of Constrained Water by :

Download or read book Structure And Dynamics Of Constrained Water written by and published by . This book was released on 2002 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The thesis, which contains nine chapters, reports extensive large scale atomistic molecular dynamics (MD) simulation studies of water structure and dynamics at the surface of an anionic micelle, hydration layer of two proteins, and in the grooves of a 38-base pairs long DNA. Understanding the structure and dynamics of water molecules at the surfaces of self-organized assemblies and complex biological macromolecules has become a subject of intense research in recent times. Chapter 1 contains a brief overview of the biomolecular hydration dynamics. Relevant experimental, computational, and theoretical studies of biomolecular hydration and the time scales associated with the water dynamics are discussed. In Chapters 2 and 3, the structure, environment, energetics, and dynamics of constrained water molecules in the aqueous anionic micelle of cesium perfluorooctanoate (CsPFO) have been studied using large scale atomistic molecular dynamics simulations. Based on the number of hydrogen bond (HB) that interfacial water molecule makes with the polar head group (PHG) oxygen of the micelle, we find the existence of three kinds of water at the interface. We introduce a nomenclature to identify the species as IBW2 (form two HBs with two different PHG), IBW1 (form one HB with PHG), and IFW (no HB with PHG). Despite of possessing two strong w-PHG bonds, the concentration of the IBW2 species is rather low due to entropic effect. The ion solvation dynamics study at the interface shows the presence of a slow component, with a relaxation time 1-2 order of magnitude slower than that in the corresponding bulk solvent in agreement with the experimental results. Both the translational and orientational dynamics of the water molecules near the micellar surface is found to be much slower than those in the bulk. The HB between the PHG of the micelle and the water molecule has almost ~13 times longer life time than that in the bulk between two tagged water molecules. In Chapter 4, we present.

Molecular Modeling and Simulation of Hydrogen Bonding Pure Fluids and Mixtures

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Publisher : Logos Verlag Berlin GmbH
ISBN 13 : 3832519459
Total Pages : 174 pages
Book Rating : 4.8/5 (325 download)

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Book Synopsis Molecular Modeling and Simulation of Hydrogen Bonding Pure Fluids and Mixtures by : Thorsten Schnabel

Download or read book Molecular Modeling and Simulation of Hydrogen Bonding Pure Fluids and Mixtures written by Thorsten Schnabel and published by Logos Verlag Berlin GmbH. This book was released on 2008 with total page 174 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Molecular Basics of Liquids and Liquid-Based Materials

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Publisher : Springer Nature
ISBN 13 : 981165395X
Total Pages : 469 pages
Book Rating : 4.8/5 (116 download)

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Book Synopsis Molecular Basics of Liquids and Liquid-Based Materials by : Katsura Nishiyama

Download or read book Molecular Basics of Liquids and Liquid-Based Materials written by Katsura Nishiyama and published by Springer Nature. This book was released on 2022-01-03 with total page 469 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book sheds light on the molecular aspects of liquids and liquid-based materials such as organic or inorganic liquids, ionic liquids, proteins, biomaterials, and soft materials including gels. The reader discovers how the molecular basics of such systems are connected with their properties, dynamics, and functions. Once the use and application of liquids and liquid-based materials are understood, the book becomes a source of the latest, detailed knowledge of their structures, dynamics, and functions emerging from molecularity. The systems discussed in the book have structural dimensions varying from nanometers to millimeters, thus the precise estimation of structures and dynamics from experimental, theoretical, and simulation methods is of crucial importance. Outlines of the practical knowledge needed in research and development are helpfully included in the book.

Annual Reports in Computational Chemistry

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Publisher : Elsevier
ISBN 13 : 044463682X
Total Pages : 438 pages
Book Rating : 4.4/5 (446 download)

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Book Synopsis Annual Reports in Computational Chemistry by :

Download or read book Annual Reports in Computational Chemistry written by and published by Elsevier. This book was released on 2015-11-29 with total page 438 pages. Available in PDF, EPUB and Kindle. Book excerpt: Annual Reports in Computational Chemistry provides timely and critical reviews of important topics in computational chemistry as applied to all chemical disciplines. Topics covered include quantum chemistry, molecular mechanics, force fields, chemical education, and applications in academic and industrial settings. Focusing on the most recent literature and advances in the field, each article covers a specific topic of importance to computational chemists. Quantum chemistry Molecular mechanics Force fields Chemical education and applications in academic and industrial settings

Hydrogen Bond Networks

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Publisher : Springer
ISBN 13 : 9789401583336
Total Pages : 558 pages
Book Rating : 4.5/5 (833 download)

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Book Synopsis Hydrogen Bond Networks by : Marie-Claire Bellisent-Funel

Download or read book Hydrogen Bond Networks written by Marie-Claire Bellisent-Funel and published by Springer. This book was released on 2014-03-14 with total page 558 pages. Available in PDF, EPUB and Kindle. Book excerpt: The almost universal presence of water in our everyday lives and the very `common' nature of its presence and properties possibly deflects attention from the fact that it has a number of very unusual characteristics which, furthermore, are found to be extremely sensitive to physical parameters, chemical environment and other influences. Hydrogen-bonding effects, too, are not restricted to water, so it is necessary to investigate other systems as well, in order to understand the characteristics in a wider context. Hydrogen Bond Networks reflects the diversity and relevance of water in subjects ranging from the fundamentals of condensed matter physics, through aspects of chemical reactivity to structure and function in biological systems.

Hydrodynamics

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Publisher : BoD – Books on Demand
ISBN 13 : 9533075961
Total Pages : 462 pages
Book Rating : 4.5/5 (33 download)

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Book Synopsis Hydrodynamics by : Harry Schulz

Download or read book Hydrodynamics written by Harry Schulz and published by BoD – Books on Demand. This book was released on 2011-12-22 with total page 462 pages. Available in PDF, EPUB and Kindle. Book excerpt: The phenomena related to the flow of fluids are generally complex, and difficult to quantify. New approaches - considering points of view still not explored - may introduce useful tools in the study of Hydrodynamics and the related transport phenomena. The details of the flows and the properties of the fluids must be considered on a very small scale perspective. Consequently, new concepts and tools are generated to better describe the fluids and their properties. This volume presents conclusions about advanced topics of calculated and observed flows. It contains eighteen chapters, organized in five sections: 1) Mathematical Models in Fluid Mechanics, 2) Biological Applications and Biohydrodynamics, 3) Detailed Experimental Analyses of Fluids and Flows, 4) Radiation-, Electro-, Magnetohydrodynamics, and Magnetorheology, 5) Special Topics on Simulations and Experimental Data. These chapters present new points of view about methods and tools used in Hydrodynamics.

Structure and Dynamics of Hydrogen Bonding in the Liquid State of Small Molecules

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ISBN 13 :
Total Pages : 268 pages
Book Rating : 4.:/5 (89 download)

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Book Synopsis Structure and Dynamics of Hydrogen Bonding in the Liquid State of Small Molecules by : Mark Alan Wendt

Download or read book Structure and Dynamics of Hydrogen Bonding in the Liquid State of Small Molecules written by Mark Alan Wendt and published by . This book was released on 1999 with total page 268 pages. Available in PDF, EPUB and Kindle. Book excerpt:

A Molecular Dynamics Simulation Study of the Hydrogen Bond Networks in Water-glycerol Mixtures

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Publisher :
ISBN 13 :
Total Pages : 55 pages
Book Rating : 4.:/5 (111 download)

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Book Synopsis A Molecular Dynamics Simulation Study of the Hydrogen Bond Networks in Water-glycerol Mixtures by : Trevor Ryan Fisher

Download or read book A Molecular Dynamics Simulation Study of the Hydrogen Bond Networks in Water-glycerol Mixtures written by Trevor Ryan Fisher and published by . This book was released on 2019 with total page 55 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Machine Learning in Biomolecular Simulations

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Publisher : Frontiers Media SA
ISBN 13 : 2889631362
Total Pages : 129 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Machine Learning in Biomolecular Simulations by : Gennady Verkhivker

Download or read book Machine Learning in Biomolecular Simulations written by Gennady Verkhivker and published by Frontiers Media SA. This book was released on 2019-10-21 with total page 129 pages. Available in PDF, EPUB and Kindle. Book excerpt: Machine learning methods such as neural networks, non-linear dimensionality reduction techniques, random forests and others meet in this research topic with biomolecular simulations. The authors of eight articles applied these methods to analyze simulation results, accelerate simulations or to make molecular mechanics force fields more accurate.

Modern Techniques of Spectroscopy

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Publisher : Springer Nature
ISBN 13 : 9813360844
Total Pages : 663 pages
Book Rating : 4.8/5 (133 download)

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Book Synopsis Modern Techniques of Spectroscopy by : Dheeraj Kumar Singh

Download or read book Modern Techniques of Spectroscopy written by Dheeraj Kumar Singh and published by Springer Nature. This book was released on 2021-04-01 with total page 663 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book highlights recent developments in the field of spectroscopy by providing the readers with an updated and high-level of overview. The focus of this book is on the introduction to concepts of modern spectroscopic techniques, recent technological innovations in this field, and current examples of applications to molecules and materials relevant for academia and industry. The book will be beneficial to researchers from various branches of science and technology, and is intended to point them to modern techniques, which might be useful for their specific problems. Spectroscopic techniques, that are discussed include, UV-Visible absorption spectroscopy, XPS, Raman spectroscopy, SERS, TERS, CARS, IR absorption spectroscopy, SFG, LIBS, Quantum cascade laser (QCL) spectroscopy, fluorescence spectroscopy, ellipsometry, cavity-enhanced absorption spectroscopy, such as cavity ring-down spectroscopy (CRDS) and evanescent wave-CRDS both in gas and condensed phases, time-resolved spectroscopy etc. Applications introduced in the different chapters demonstrates the usefulness of the spectroscopic techniques for the characterization of fundamental properties of molecules, e.g. in connection with environmental impact, bio-activity, or usefulness for pharmaceutical drugs, and materials important e.g. for nano-science, nuclear chemistry, or bio-applications. The book presents how spectroscopic techniques can help to better understand substances, which have also great impact on questions of social and economic relevance (environment, alternative energy, etc.).

Interactions and Dynamics of Small Molecules in Liquid Mixtures

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Publisher :
ISBN 13 :
Total Pages : 206 pages
Book Rating : 4.:/5 (318 download)

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Book Synopsis Interactions and Dynamics of Small Molecules in Liquid Mixtures by : Helena Kovács

Download or read book Interactions and Dynamics of Small Molecules in Liquid Mixtures written by Helena Kovács and published by . This book was released on 1990 with total page 206 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Computational Drug Delivery

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Publisher : Walter de Gruyter GmbH & Co KG
ISBN 13 : 3111209717
Total Pages : 552 pages
Book Rating : 4.1/5 (112 download)

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Book Synopsis Computational Drug Delivery by : Pooja A. Chawla

Download or read book Computational Drug Delivery written by Pooja A. Chawla and published by Walter de Gruyter GmbH & Co KG. This book was released on 2024-10-07 with total page 552 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book bridges the gap between pharmaceutics and molecular modelling at the micro, meso and macro scale. It covers Lipinski's rule of five, nanoparticulate drug delivery, computational prediction of drug solubility and ability to cross blood brain barrier, computer-based simulation of pharmacokinetic parameters, virtual screening of mucoadhesive polymers, QSPR modelling, designing of 2D nanomaterials and role of principal component analysis.

Understanding and Modelling Hydrogen Bonding in Liquid Water

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Publisher :
ISBN 13 :
Total Pages : 124 pages
Book Rating : 4.:/5 (89 download)

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Book Synopsis Understanding and Modelling Hydrogen Bonding in Liquid Water by : Revati Kumar

Download or read book Understanding and Modelling Hydrogen Bonding in Liquid Water written by Revati Kumar and published by . This book was released on 2007 with total page 124 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Journal of the Indian Institute of Science

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Publisher :
ISBN 13 :
Total Pages : 178 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Journal of the Indian Institute of Science by : Indian Institute of Science, Bangalore

Download or read book Journal of the Indian Institute of Science written by Indian Institute of Science, Bangalore and published by . This book was released on 2003 with total page 178 pages. Available in PDF, EPUB and Kindle. Book excerpt: