Sequences And The De Bruijn Graph

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Sequences and the de Bruijn Graph

Author : Tuvi Etzion
Publisher : Elsevier
ISBN 13 : 0443135185
Total Pages : 484 pages
Book Rating : 4.4/5 (431 download)

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Book Synopsis Sequences and the de Bruijn Graph by : Tuvi Etzion

Download or read book Sequences and the de Bruijn Graph written by Tuvi Etzion and published by Elsevier. This book was released on 2024-02-29 with total page 484 pages. Available in PDF, EPUB and Kindle. Book excerpt: The de Bruijn graph was defined in 1949 to enumerate the number of closed sequences where each n-tuple appears exactly once as a window in a sequence. Through the years, the graph and its sequences have found numerous applications – in space technology, wireless communication, cryptography, parallel computation, genome assembly, DNA storage, and microbiome research, among others. Sequences and the de Bruijn Graph: Properties, Constructions, and Applications explores the foundations of theoretical mathematical concepts and the important applications to computer science, electrical engineering, and bioinformatics. The book introduces the various concepts, ideas, and techniques associated with the use of the de Bruijn Graph, providing comprehensive coverage of sequence classification, one-dimensional and two-dimensional applications, graphs, interconnected networks, layouts, and embedded systems. Researchers, graduate students, professors, and professionals working in the fields of applied mathematics, electrical engineering, computer science and bioinformatics will find this book useful. - Investigates computational and engineering applications associated with the de Bruijn graph, its sequences, and their generalization - Explores one-dimensional and two-dimensional sequences with special properties and their various properties and applications - Introduces the rich structure of the de Bruijn graph and its sequences, in both mathematical theory and its applications to computing and engineering problems

Genome-Scale Algorithm Design

Author : Veli Mäkinen
Publisher : Cambridge University Press
ISBN 13 : 1009341219
Total Pages : 470 pages
Book Rating : 4.0/5 (93 download)

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Book Synopsis Genome-Scale Algorithm Design by : Veli Mäkinen

Download or read book Genome-Scale Algorithm Design written by Veli Mäkinen and published by Cambridge University Press. This book was released on 2023-10-12 with total page 470 pages. Available in PDF, EPUB and Kindle. Book excerpt: Guided by standard bioscience workflows in high-throughput sequencing analysis, this book for graduate students, researchers, and professionals in bioinformatics and computer science offers a unified presentation of genome-scale algorithms. This new edition covers the use of minimizers and other advanced data structures in pangenomics approaches.

Algorithms in Bioinformatics

Author : Raffaele Giancarlo
Publisher : Springer
ISBN 13 : 3540741267
Total Pages : 443 pages
Book Rating : 4.5/5 (47 download)

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Book Synopsis Algorithms in Bioinformatics by : Raffaele Giancarlo

Download or read book Algorithms in Bioinformatics written by Raffaele Giancarlo and published by Springer. This book was released on 2007-08-24 with total page 443 pages. Available in PDF, EPUB and Kindle. Book excerpt: The refereed proceedings from the 7th International Workshop on Algorithms in Bioinformatics are provided in this volume. Papers address current issues in algorithms in bioinformatics, ranging from mathematical tools to experimental studies of approximation algorithms to significant computational analyses. Biological problems examined include genetic mapping, sequence alignment and analysis, phylogeny, comparative genomics, and protein structure.

Magical Mathematics

Author : Persi Diaconis
Publisher : Princeton University Press
ISBN 13 : 0691169772
Total Pages : 258 pages
Book Rating : 4.6/5 (911 download)

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Book Synopsis Magical Mathematics by : Persi Diaconis

Download or read book Magical Mathematics written by Persi Diaconis and published by Princeton University Press. This book was released on 2015-10-13 with total page 258 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Magical Mathematics reveals the secrets of amazing, fun-to-perform card tricks--and the profound mathematical ideas behind them--that will astound even the most accomplished magician. Persi Diaconis and Ron Graham provide easy, step-by-step instructions for each trick, explaining how to set up the effect and offering tips on what to say and do while performing it. Each card trick introduces a new mathematical idea, and varying the tricks in turn takes readers to the very threshold of today's mathematical knowledge. For example, the Gilbreath principle--a fantastic effect where the cards remain in control despite being shuffled--is found to share an intimate connection with the Mandelbrot set. Other card tricks link to the mathematical secrets of combinatorics, graph theory, number theory, topology, the Riemann hypothesis, and even Fermat's last theorem. Diaconis and Graham are mathematicians as well as skilled performers with decades of professional experience between them. In this book they share a wealth of conjuring lore, including some closely guarded secrets of legendary magicians. Magical Mathematics covers the mathematics of juggling and shows how the I Ching connects to the history of probability and magic tricks both old and new. It tells the stories--and reveals the best tricks--of the eccentric and brilliant inventors of mathematical magic. Magical Mathematics exposes old gambling secrets through the mathematics of shuffling cards, explains the classic street-gambling scam of three-card monte, traces the history of mathematical magic back to the thirteenth century and the oldest mathematical trick--and much more"-

Next Generation Sequencing

Author : Jerzy Kulski
Publisher : BoD – Books on Demand
ISBN 13 : 9535122401
Total Pages : 466 pages
Book Rating : 4.5/5 (351 download)

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Book Synopsis Next Generation Sequencing by : Jerzy Kulski

Download or read book Next Generation Sequencing written by Jerzy Kulski and published by BoD – Books on Demand. This book was released on 2016-01-14 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: Next generation sequencing (NGS) has surpassed the traditional Sanger sequencing method to become the main choice for large-scale, genome-wide sequencing studies with ultra-high-throughput production and a huge reduction in costs. The NGS technologies have had enormous impact on the studies of structural and functional genomics in all the life sciences. In this book, Next Generation Sequencing Advances, Applications and Challenges, the sixteen chapters written by experts cover various aspects of NGS including genomics, transcriptomics and methylomics, the sequencing platforms, and the bioinformatics challenges in processing and analysing huge amounts of sequencing data. Following an overview of the evolution of NGS in the brave new world of omics, the book examines the advances and challenges of NGS applications in basic and applied research on microorganisms, agricultural plants and humans. This book is of value to all who are interested in DNA sequencing and bioinformatics across all fields of the life sciences.

Shift Register Sequences

Author : Solomon W. Golomb
Publisher : World Scientific Publishing Company
ISBN 13 : 9789814632003
Total Pages : 249 pages
Book Rating : 4.6/5 (32 download)

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Book Synopsis Shift Register Sequences by : Solomon W. Golomb

Download or read book Shift Register Sequences written by Solomon W. Golomb and published by World Scientific Publishing Company. This book was released on 2016-05-30 with total page 249 pages. Available in PDF, EPUB and Kindle. Book excerpt: Shift register sequences cover a broad range of applications, from radar signal design, pseudo-random number generation, digital wireless telephony, and many other areas in coded communications. It is the primary area for which the author, Dr Golomb, received the US National Medal of Science. This book is the third, revised edition of the original definitive book on shift register sequences which was published in 1967, which has been widely distributed, read, and cited. It has stood the test of time, and provides a clear, comprehensive, and readily applicable description of both linear and non-linear shift register sequences.

String Processing and Information Retrieval

Author : Nieves R. Brisaboa
Publisher : Springer Nature
ISBN 13 : 3030326861
Total Pages : 537 pages
Book Rating : 4.0/5 (33 download)

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Book Synopsis String Processing and Information Retrieval by : Nieves R. Brisaboa

Download or read book String Processing and Information Retrieval written by Nieves R. Brisaboa and published by Springer Nature. This book was released on 2019-10-05 with total page 537 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume constitutes the refereed proceedings of the 26th International Symposium on String Processing and Information Retrieval, SPIRE 2019, held in Segovia, Spain, in October 2019. The 28 full papers and 8 short papers presented in this volume were carefully reviewed and selected from 59 submissions. They cover topics such as: data compression; information retrieval; string algorithms; algorithms; computational biology; indexing and compression; and compressed data structures.

Advances in Bioinformatics and Computational Biology

Author : João C. Setubal
Publisher : Springer Nature
ISBN 13 : 3030657752
Total Pages : 284 pages
Book Rating : 4.0/5 (36 download)

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Book Synopsis Advances in Bioinformatics and Computational Biology by : João C. Setubal

Download or read book Advances in Bioinformatics and Computational Biology written by João C. Setubal and published by Springer Nature. This book was released on 2020-12-19 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2020, held in São Paulo, Brazil, in November 2020. Due to COVID-19 pandemic the conference was held virtually The 20 revised full papers and 5 short papers were carefully reviewed and selected from 45 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.

Bacterial Genomics

Author : Aswin Sai Narain Seshasayee
Publisher : Cambridge University Press
ISBN 13 : 1107079837
Total Pages : 227 pages
Book Rating : 4.1/5 (7 download)

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Book Synopsis Bacterial Genomics by : Aswin Sai Narain Seshasayee

Download or read book Bacterial Genomics written by Aswin Sai Narain Seshasayee and published by Cambridge University Press. This book was released on 2015-03-05 with total page 227 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the application of genomic tools to examine bacterial adaptation. The emphasis is on data analysis and interpretation.

Bioinformatics Algorithms

Author : Phillip Compeau
Publisher :
ISBN 13 : 9780990374633
Total Pages : pages
Book Rating : 4.3/5 (746 download)

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Book Synopsis Bioinformatics Algorithms by : Phillip Compeau

Download or read book Bioinformatics Algorithms written by Phillip Compeau and published by . This book was released on 1986-06 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics Algorithms: an Active Learning Approach is one of the first textbooks to emerge from the recent Massive Online Open Course (MOOC) revolution. A light-hearted and analogy-filled companion to the authors' acclaimed online course (http://coursera.org/course/bioinformatics), this book presents students with a dynamic approach to learning bioinformatics. It strikes a unique balance between practical challenges in modern biology and fundamental algorithmic ideas, thus capturing the interest of students of biology and computer science students alike.Each chapter begins with a central biological question, such as "Are There Fragile Regions in the Human Genome?" or "Which DNA Patterns Play the Role of Molecular Clocks?" and then steadily develops the algorithmic sophistication required to answer this question. Hundreds of exercises are incorporated directly into the text as soon as they are needed; readers can test their knowledge through automated coding challenges on Rosalind (http://rosalind.info), an online platform for learning bioinformatics.The textbook website (http://bioinformaticsalgorithms.org) directs readers toward additional educational materials, including video lectures and PowerPoint slides.

A Course in Combinatorics

Author : J. H. van Lint
Publisher : Cambridge University Press
ISBN 13 : 9780521006019
Total Pages : 620 pages
Book Rating : 4.0/5 (6 download)

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Book Synopsis A Course in Combinatorics by : J. H. van Lint

Download or read book A Course in Combinatorics written by J. H. van Lint and published by Cambridge University Press. This book was released on 2001-11-22 with total page 620 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the second edition of a popular book on combinatorics, a subject dealing with ways of arranging and distributing objects, and which involves ideas from geometry, algebra and analysis. The breadth of the theory is matched by that of its applications, which include topics as diverse as codes, circuit design and algorithm complexity. It has thus become essential for workers in many scientific fields to have some familiarity with the subject. The authors have tried to be as comprehensive as possible, dealing in a unified manner with, for example, graph theory, extremal problems, designs, colorings and codes. The depth and breadth of the coverage make the book a unique guide to the whole of the subject. The book is ideal for courses on combinatorical mathematics at the advanced undergraduate or beginning graduate level. Working mathematicians and scientists will also find it a valuable introduction and reference.

Bioinformatics in the Era of Post Genomics and Big Data

Author : Ibrokhim Y. Abdurakhmonov
Publisher : BoD – Books on Demand
ISBN 13 : 1789232686
Total Pages : 190 pages
Book Rating : 4.7/5 (892 download)

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Book Synopsis Bioinformatics in the Era of Post Genomics and Big Data by : Ibrokhim Y. Abdurakhmonov

Download or read book Bioinformatics in the Era of Post Genomics and Big Data written by Ibrokhim Y. Abdurakhmonov and published by BoD – Books on Demand. This book was released on 2018-06-20 with total page 190 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics has evolved significantly in the era of post genomics and big data. Huge advancements were made toward storing, handling, mining, comparing, extracting, clustering and analysis as well as visualization of big macromolecular data using novel computational approaches, machine and deep learning methods, and web-based server tools. There are extensively ongoing world-wide efforts to build the resources for regional hosting, organized and structured access and improving the pre-existing bioinformatics tools to efficiently and meaningfully analyze day-to-day increasing big data. This book intends to provide the reader with updates and progress on genomic data analysis, data modeling and network-based system tools.

Combinatorics and Graph Theory

Author : John Harris
Publisher : Springer Science & Business Media
ISBN 13 : 0387797114
Total Pages : 392 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis Combinatorics and Graph Theory by : John Harris

Download or read book Combinatorics and Graph Theory written by John Harris and published by Springer Science & Business Media. This book was released on 2009-04-03 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: These notes were first used in an introductory course team taught by the authors at Appalachian State University to advanced undergraduates and beginning graduates. The text was written with four pedagogical goals in mind: offer a variety of topics in one course, get to the main themes and tools as efficiently as possible, show the relationships between the different topics, and include recent results to convince students that mathematics is a living discipline.

The Burrows-Wheeler Transform:

Author : Donald Adjeroh
Publisher : Springer Science & Business Media
ISBN 13 : 038778909X
Total Pages : 353 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis The Burrows-Wheeler Transform: by : Donald Adjeroh

Download or read book The Burrows-Wheeler Transform: written by Donald Adjeroh and published by Springer Science & Business Media. This book was released on 2008-06-17 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Burrows-Wheeler Transform is one of the best lossless compression me- ods available. It is an intriguing — even puzzling — approach to squeezing redundancy out of data, it has an interesting history, and it has applications well beyond its original purpose as a compression method. It is a relatively late addition to the compression canon, and hence our motivation to write this book, looking at the method in detail, bringing together the threads that led to its discovery and development, and speculating on what future ideas might grow out of it. The book is aimed at a wide audience, ranging from those interested in learning a little more than the short descriptions of the BWT given in st- dard texts, through to those whose research is building on what we know about compression and pattern matching. The ?rst few chapters are a careful description suitable for readers with an elementary computer science ba- ground (and these chapters have been used in undergraduate courses), but later chapters collect a wide range of detailed developments, some of which are built on advanced concepts from a range of computer science topics (for example, some of the advanced material has been used in a graduate c- puter science course in string algorithms). Some of the later explanations require some mathematical sophistication, but most should be accessible to those with a broad background in computer science.

Algebraic Combinatorics

Author : Richard P. Stanley
Publisher : Springer Science & Business Media
ISBN 13 : 1461469988
Total Pages : 226 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Algebraic Combinatorics by : Richard P. Stanley

Download or read book Algebraic Combinatorics written by Richard P. Stanley and published by Springer Science & Business Media. This book was released on 2013-06-17 with total page 226 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written by one of the foremost experts in the field, Algebraic Combinatorics is a unique undergraduate textbook that will prepare the next generation of pure and applied mathematicians. The combination of the author’s extensive knowledge of combinatorics and classical and practical tools from algebra will inspire motivated students to delve deeply into the fascinating interplay between algebra and combinatorics. Readers will be able to apply their newfound knowledge to mathematical, engineering, and business models. The text is primarily intended for use in a one-semester advanced undergraduate course in algebraic combinatorics, enumerative combinatorics, or graph theory. Prerequisites include a basic knowledge of linear algebra over a field, existence of finite fields, and group theory. The topics in each chapter build on one another and include extensive problem sets as well as hints to selected exercises. Key topics include walks on graphs, cubes and the Radon transform, the Matrix–Tree Theorem, and the Sperner property. There are also three appendices on purely enumerative aspects of combinatorics related to the chapter material: the RSK algorithm, plane partitions, and the enumeration of labeled trees. Richard Stanley is currently professor of Applied Mathematics at the Massachusetts Institute of Technology. Stanley has received several awards including the George Polya Prize in applied combinatorics, the Guggenheim Fellowship, and the Leroy P. Steele Prize for mathematical exposition. Also by the author: Combinatorics and Commutative Algebra, Second Edition, © Birkhauser.

Analytic Combinatorics

Author : Philippe Flajolet
Publisher : Cambridge University Press
ISBN 13 : 1139477161
Total Pages : 825 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Analytic Combinatorics by : Philippe Flajolet

Download or read book Analytic Combinatorics written by Philippe Flajolet and published by Cambridge University Press. This book was released on 2009-01-15 with total page 825 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analytic combinatorics aims to enable precise quantitative predictions of the properties of large combinatorial structures. The theory has emerged over recent decades as essential both for the analysis of algorithms and for the study of scientific models in many disciplines, including probability theory, statistical physics, computational biology, and information theory. With a careful combination of symbolic enumeration methods and complex analysis, drawing heavily on generating functions, results of sweeping generality emerge that can be applied in particular to fundamental structures such as permutations, sequences, strings, walks, paths, trees, graphs and maps. This account is the definitive treatment of the topic. The authors give full coverage of the underlying mathematics and a thorough treatment of both classical and modern applications of the theory. The text is complemented with exercises, examples, appendices and notes to aid understanding. The book can be used for an advanced undergraduate or a graduate course, or for self-study.

Modern Discrete Mathematics and Analysis

Author : Nicholas J. Daras
Publisher : Springer
ISBN 13 : 3319743252
Total Pages : 516 pages
Book Rating : 4.3/5 (197 download)

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Book Synopsis Modern Discrete Mathematics and Analysis by : Nicholas J. Daras

Download or read book Modern Discrete Mathematics and Analysis written by Nicholas J. Daras and published by Springer. This book was released on 2018-07-05 with total page 516 pages. Available in PDF, EPUB and Kindle. Book excerpt: A variety of modern research in analysis and discrete mathematics is provided in this book along with applications in cryptographic methods and information security, in order to explore new techniques, methods, and problems for further investigation. Distinguished researchers and scientists in analysis and discrete mathematics present their research. Graduate students, scientists and engineers, interested in a broad spectrum of current theories, methods, and applications in interdisciplinary fields will find this book invaluable.