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Rna Metabolism In Trypanosomes
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Book Synopsis RNA Metabolism in Trypanosomes by : Albrecht Bindereif
Download or read book RNA Metabolism in Trypanosomes written by Albrecht Bindereif and published by Springer Science & Business Media. This book was released on 2012-06-12 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt: Trypanosomes are unicellular protozoa of ancient evolutionary origin that are responsible for several tropical diseases, such as African sleeping sickness. Over the last few decades, research in trypanosome biology has revealed many unique and fascinating features, many of which have helped to establish new paradigms in other biological systems. This applies in particular to studies in gene expression and regulation, which benefit enormously from the trypanosome genome projects and from the new genome-wide approaches recently introduced in trypanosome research. This volume covers the most important aspects of biosynthesis, processing, and functions of RNA in trypanosomes, ranging from transcription to RNA editing, mRNA splicing/translation/turnover, processing of transfer and ribosomal RNA, RNA interference, and current transcriptome-wide analyses. Recent progress in RNA-focused research in trypanosomatids promises to yield novel insights into trypanosome-specific features, as well as to reveal in the process new potential therapeutic strategies for combating these parasitic diseases.
Book Synopsis Regulation of RNA Metabolism by ARE-binding Proteins in Trypanosoma Brucei by : Zhiquan Lu
Download or read book Regulation of RNA Metabolism by ARE-binding Proteins in Trypanosoma Brucei written by Zhiquan Lu and published by . This book was released on 2015 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: "Trypanosomes are protozoan parasites that alternate between insect and mammalian hosts over the course of their life cycle. In the absence of transcriptional control, these parasites depend almost entirely on post-transcriptional mechanisms to remodel gene expression in response to internal and external stimuli. This is achieved through a complex network of trans-acting RNA-binding proteins (RBPs) and cis-acting regulatory elements. Our computational studies identified highly conserved adenosine-uridine (AU)-rich elements (AREs) in the 3' untranslated regions (UTRs) of a large number of Trypanosoma brucei mRNAs. These ARE-containing transcripts are up-regulated in the stationary phase of in vitro-cultured procyclic form cells and down-regulated in stumpy and slender bloodstream form cells, suggesting a role for AREs in the regulation of parasite differentiation. The expression of ARE-containing transcripts positively correlated with three RBPs identified using sequence analysis as potential remote homologs of ELAV (Embryonic Lethal Abnormal Vision) proteins. In higher eukaryotes, proteins of the ELAV-like family regulate gene expression by stabilizing or promoting degradation of ARE-containing transcripts, suggesting a similar role for these proteins in regulating trypanosomatid ARE-containing mRNAs. Using in vitro electrophoretic mobility shift assays (EMSA) and RNA immunoprecipitation followed by deep sequencing (RIP-seq), we confirmed that the T. brucei ELAV-like proteins associate specifically and directly with ARE-containing transcripts. Furthermore, microarray analysis of over-expression and RNA interference (RNAi) knockdown cell lines suggests that the three identified ELAV-like proteins (ELAV-LPs) specifically regulate expression of ARE-containing transcripts. Understanding the role of the potential ELAV-LPs in the complex network of post-transcriptional regulation in T. brucei may elucidate new pathways and potential therapeutic targets for the treatment of trypanosomiasis." --
Download or read book Alfabeto de mamíferos written by and published by . This book was released on 1881 with total page 31 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Identification and Characterization of Trypanosoma Brucei PPR Proteins, Putative Mitochondrial RNA Metabolism Proteins by : Melissa Kay Mingler
Download or read book Identification and Characterization of Trypanosoma Brucei PPR Proteins, Putative Mitochondrial RNA Metabolism Proteins written by Melissa Kay Mingler and published by . This book was released on 2005 with total page 200 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis RNA Metabolism in Mitochondria by : Jorge Cruz-Reyes
Download or read book RNA Metabolism in Mitochondria written by Jorge Cruz-Reyes and published by Springer. This book was released on 2018-06-12 with total page 249 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume focuses on mitochondrial RNA metabolism, emphasizing recent discoveries and technological advances in this fast moving area that increase our understanding of mitochondrial gene function. Topics addressed include the interplay of mitochondria with the nucleus and cytosol, structure-function connections, and relevance to human disease. Mitochondria are the powerhouses of the cell, and a great deal is known about mitochondrial energy metabolism. Less well known is the plethora of amazing mechanisms that have evolved to control expression of mitochondrial genomes. Several RNA processes and machineries in protozoa, plants, flies and humans are discussed, including: transcription and RNA polymerase mechanism; tRNA processing of 5′ and 3′ ends; mRNA maturation by nucleotide insertion/deletion editing and by RNA splicing; mRNA stability; and RNA import. Specialized factors and ribonucleoproteins (RNPs) examined include pentatricopeptide repeat (PPR) proteins, RNase P, polymerases, helicases, nucleases, editing and repair enzymes. Remarkable features of these processes and factors are either not found outside mitochondria, differ substantially among eukaryotic lineages, or are unique in biology.
Book Synopsis RNA Editing in Trypanosomes by : Alfredo J. Hernandez
Download or read book RNA Editing in Trypanosomes written by Alfredo J. Hernandez and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: RNA editing in trypanosomes is the post-transcriptional insertion or deletion of uridylates at specific sites in mitochondrial mRNAs. This process is catalyzed by a multienzyme, multisubunit complex through a series of enzymatic cycles directed by small, trans-acting RNA molecules. Despite impressive progress in our understanding of the mechanism of RNA editing and the composition of the editing complex, fundamental questions regarding RNP assembly and the regulation of catalysis remain. This dissertation presents studies of RNA-protein interactions between RNA editing complexes and substrate RNAs and the determination of substrate secondary structural determinants that govern them. Our results suggest that substrate association, cleavage and full-round editing by RNA editing complexes in vitro obey hierarchical determinants that increase in complexity as editing progresses and we propose a model for substrate recognition by RNA editing complexes. In addition, this dissertation also presents the characterization of a novel mitochondrial RNA helicase, named REH2 and its macromolecular interactions. Our data suggest that REH2 is intimately involved in interactions with macromolecular complexes that integrate diverse processes mediating mitochondrial gene expression. These results have implications for the mechanism of substrate RNA recognition by RNA editing complexes as well as for the integration of RNA editing to other facets of mitochondrial RNA metabolism.
Download or read book RNA Editing written by H. Ulrich Göringer and published by Springer Science & Business Media. This book was released on 2008-01-12 with total page 239 pages. Available in PDF, EPUB and Kindle. Book excerpt: Goringer’s brilliant new work dedicates a chapter to each of the main types of RNA editing – the very first volume to do so. All of the sections here have been written by experts in the various research areas and a specific focus is put on the correlation between RNA structure and function, as well as on the complex cellular machineries that catalyze the different editing reactions. This leads to a "state of the art" compendium of our current knowledge on RNA editing.
Book Synopsis Handbook of RNA Biochemistry by : Roland K. Hartmann
Download or read book Handbook of RNA Biochemistry written by Roland K. Hartmann and published by John Wiley & Sons. This book was released on 2015-06-22 with total page 1370 pages. Available in PDF, EPUB and Kindle. Book excerpt: The second edition of a highly acclaimed handbook and ready reference. Unmatched in its breadth and quality, around 100 specialists from all over the world share their up-to-date expertise and experiences, including hundreds of protocols, complete with explanations, and hitherto unpublished troubleshooting hints. They cover all modern techniques for the handling, analysis and modification of RNAs and their complexes with proteins. Throughout, they bear the practising bench scientist in mind, providing quick and reliable access to a plethora of solutions for practical questions of RNA research, ranging from simple to highly complex. This broad scope allows the treatment of specialized methods side by side with basic biochemical techniques, making the book a real treasure trove for every researcher experimenting with RNA.
Download or read book Mitochondrial Gene Expression written by and published by . This book was released on 2021 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Carbohydrate Metabolism in Cultured Cells by : M.J. Morgan
Download or read book Carbohydrate Metabolism in Cultured Cells written by M.J. Morgan and published by Springer. This book was released on 2012-11-26 with total page 536 pages. Available in PDF, EPUB and Kindle. Book excerpt: It is perhaps obvious to any student of Biology that the discovery of chemical processes in whole organisms has usually preceded the elucidation of the compo nent steps. However, it is perhaps less obvious that the unravelling of the se quences in which those chemical steps occur in living matter, of the precise mechanisms involved, and of the manner in which they are regulated, would have been achieved neither by the study of intact plants and animals nor even of extracts derived from them. Our ability to understand the nature and regulation of metabolism rests on two main premises: the postulate that life processes can indeed be validly investigated with individual cells and cell-free extracts, and the thesis that there is an essential "unity in biochemistry" (as Kluyver put it, 60 years ago) that enables events in one organism to be legitimately studied in another. Of particular utility in this latter respect has been the use of cultures of single-celled organisms, growing in defined media-especially prokaryotes, such as Escherichia coli, and eukaryotes, such as Neurospora and Sac charomyces sp. , to which both biochemical and genetical techniques could be applied. It was, of course, Pasteur's observations of bacterial fermentations that first overthrew the belief that oxygen was essential for all energy-yielding pro cesses: his recognition that "La fermentation . . . . . c' est La vie sans air" laid the foundations of our knowledge of glycolysis.
Book Synopsis Molecular Medical Parasitology by : Joseph Marr
Download or read book Molecular Medical Parasitology written by Joseph Marr and published by Elsevier. This book was released on 2002-12-10 with total page 509 pages. Available in PDF, EPUB and Kindle. Book excerpt: A valuable, new source, Molecular Medical Parasitology is the only text of its kind -- one that applies broad concepts and current scientific advances from both molecular biology and biochemistry to the study of parasitic organisms. An internationally renowned team of scientists and physicians places parasites in their broad biological contexts while still emphasizing the specifics that differentiate these organisms. Not only will researchers and faculty in parasitology find this an indispensable guide, physicians will benefit from the thorough coverage molecular biology and biochemistry's current influences on treatment and management of parasitic diseases. Features the most up-to-date scientific methods behind the medical management of parasitic diseases Applies the most current synthesis of molecular biology and biochemistry to parasitic organisms Contains many informative figures and clear illustrations
Book Synopsis Mitochondria and Anaerobic Energy Metabolism in Eukaryotes by : William F. Martin
Download or read book Mitochondria and Anaerobic Energy Metabolism in Eukaryotes written by William F. Martin and published by Walter de Gruyter GmbH & Co KG. This book was released on 2020-12-07 with total page 269 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mitochondria are sometimes called the powerhouses of eukaryotic cells, because mitochondria are the site of ATP synthesis in the cell. ATP is the universal energy currency, it provides the power that runs all other life processes. Humans need oxygen to survive because of ATP synthesis in mitochondria. The sugars from our diet are converted to carbon dioxide in mitochondria in a process that requires oxygen. Just like a fire needs oxygen to burn, our mitochondria need oxygen to make ATP. From textbooks and popular literature one can easily get the impression that all mitochondria require oxygen. But that is not the case. There are many groups of organismsm known that make ATP in mitochondria without the help of oxygen. They have preserved biochemical relicts from the early evolution of eukaryotic cells, which took place during times in Earth history when there was hardly any oxygen avaiable, certainly not enough to breathe. How the anaerobic forms of mitochondria work, in which organisms they occur, and how the eukaryotic anaerobes that possess them fit into the larger picture of rising atmospheric oxygen during Earth history are the topic of this book.
Book Synopsis Systematics and the Exploration of Life by : Philippe Grandcolas
Download or read book Systematics and the Exploration of Life written by Philippe Grandcolas and published by John Wiley & Sons. This book was released on 2021-05-04 with total page 242 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book's aim is to obtain and organize knowledge about the diversity of living things. Their epistomological and methodological fundamentals are explained in the framework of the biology of evolution. The methods of construction and use of phylogenetic trees are presented as well as the classification and description of taxa with the nomenclature rules.
Book Synopsis Trypanosomatids by : Paul A. M. Michels
Download or read book Trypanosomatids written by Paul A. M. Michels and published by Humana. This book was released on 2020-03-28 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume explores the latest methods used by researchers to study different trypanosomatid parasites. These methods cover numerous disciplines, from organismal biology to molecular mechanism. The chapters in this book cover topics such as high-throughput sequencing; next-generation analysis of trypanosomatid genome stability and instability; DNA repair in cell extracts; ribosome profiling; and the use of CRISPR/Cas9 technology for gene editing. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and practical, Trypanosomatids: Methods and Protocols is a valuable resource for any researcher working with trypanosomatids and trypanosomatid-borne diseases. Chapters 14, 15, 16, 23, 24, 30, and 48 are open access under a CC BY 4.0 license.
Book Synopsis American Trypanosomiasis by : Kevin M. Tyler
Download or read book American Trypanosomiasis written by Kevin M. Tyler and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 166 pages. Available in PDF, EPUB and Kindle. Book excerpt: American trypanosomiasis, or Chagas disease, is caused by the protozoan parasite, Trypanosoma cruzi. Sixteen to eighteen million people are currently infected with this organism, and 45,000 deaths are attributed to the disease each year. Infection with T. cruzi is life-long, and 10-30% of persons who harbor the parasite chronically develop cardiac and gastrointestinal problems associated with the parasitosis. Although major progress has been made in recent years in reducing vector-borne and transfusion-associated transmission of T. cruzi, the burden of disability and death in persons chronically infected with the organism continues to be enormous. Eight to ten million persons born in countries in which Chagas disease is endemic currently reside in the United States, and epidemiologic and census data suggest that 50,000-100,000 are chronically infected with T. cruzi. The presence of these infected persons poses a risk of transmission of the parasite in the USA through blood transfusion and organ transplantation and several such cases have now been documented. American Trypanosomiasis, volume seven of World Class Parasites is written for students of tropical medicine, parasitology and public health, for researchers and practitioners alike who wish to bring themselves abreast of the status quo with respect to this disease. It is intended to supplement formal textbooks, in order to broaden and illuminate current areas of scientific and public health concern. Uniquely for T. cruzi, this book addresses parasite, vector and host biology, the pathogenesis of Chagas disease and current and prospective therapeutics and control strategies in a single volume.
Book Synopsis Poly(ADP-Ribosyl)ation by : Alexander Bürkle
Download or read book Poly(ADP-Ribosyl)ation written by Alexander Bürkle and published by Springer Science & Business Media. This book was released on 2008-01-11 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the most comprehensive, up-to-date reference on this post-translational modification of proteins, which is intimately linked with DNA repair, maintenance of genomic stability, transcriptional regulation, cell death and a variety of other cellular phenomena as well as with a variety of pathophysiological conditions, including ischemia-reperfusion damage, Parkinson’s disease, Type I diabetes mellitus, hemorrhagic and septic shock and other inflammatory conditions. Richly illustrated, it offers 19 chapters written by international experts.
Book Synopsis Biology for AP ® Courses by : Julianne Zedalis
Download or read book Biology for AP ® Courses written by Julianne Zedalis and published by . This book was released on 2017-10-16 with total page 1923 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biology for AP® courses covers the scope and sequence requirements of a typical two-semester Advanced Placement® biology course. The text provides comprehensive coverage of foundational research and core biology concepts through an evolutionary lens. Biology for AP® Courses was designed to meet and exceed the requirements of the College Board’s AP® Biology framework while allowing significant flexibility for instructors. Each section of the book includes an introduction based on the AP® curriculum and includes rich features that engage students in scientific practice and AP® test preparation; it also highlights careers and research opportunities in biological sciences.
