Protein Loop Structure Prediction with Flexible Stem Geometries

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Book Synopsis Protein Loop Structure Prediction with Flexible Stem Geometries by : Martin Monnigmann

Download or read book Protein Loop Structure Prediction with Flexible Stem Geometries written by Martin Monnigmann and published by . This book was released on 2005 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Biomat 2012 - International Symposium On Mathematical And Computational Biology

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Publisher : World Scientific
ISBN 13 : 9814520837
Total Pages : 406 pages
Book Rating : 4.8/5 (145 download)

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Book Synopsis Biomat 2012 - International Symposium On Mathematical And Computational Biology by : Rubem P Mondaini

Download or read book Biomat 2012 - International Symposium On Mathematical And Computational Biology written by Rubem P Mondaini and published by World Scientific. This book was released on 2013-06-25 with total page 406 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a book of a series on interdisciplinary topics of the Biological and Mathematical Sciences. The chapters correspond to selected papers on special research themes, which were presented at BIOMAT 2012 International Symposium on Mathematical and Computational Biology, in Tempe, Arizona, USA, November 6-10.This book contains state-of-the art articles on special research topics on mathematical biology, biological physics and mathematical modeling of biosystems; comprehensive reviews on interdisciplinary areas written by prominent leaders of scientific research groups. The treatment is both pedagogical and advanced in order to motivate research students as well as to fulfill the requirements of professional practitioners.

Computational Science – ICCS 2009

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Publisher : Springer
ISBN 13 : 3642019706
Total Pages : 1030 pages
Book Rating : 4.6/5 (42 download)

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Book Synopsis Computational Science – ICCS 2009 by : Gabrielle Allen

Download or read book Computational Science – ICCS 2009 written by Gabrielle Allen and published by Springer. This book was released on 2009-05-20 with total page 1030 pages. Available in PDF, EPUB and Kindle. Book excerpt: “There is something fascinating about science. One gets such wholesale returns of conjecture out of such a tri?ing investment of fact. ” Mark Twain, Life on the Mississippi The challenges in succeeding with computational science are numerous and deeply a?ect all disciplines. NSF’s 2006 Blue Ribbon Panel of Simulation-Based 1 Engineering Science (SBES) states ‘researchers and educators [agree]: com- tational and simulation engineering sciences are fundamental to the security and welfare of the United States. . . We must overcome di?culties inherent in multiscale modeling, the development of next-generation algorithms, and the design. . . of dynamic data-driven application systems. . . We must determine better ways to integrate data-intensive computing, visualization, and simulation. - portantly,wemustoverhauloureducationalsystemtofostertheinterdisciplinary study. . . The payo?sformeeting these challengesareprofound. ’The International Conference on Computational Science 2009 (ICCS 2009) explored how com- tational sciences are not only advancing the traditional hard science disciplines, but also stretching beyond, with applications in the arts, humanities, media and all aspects of research. This interdisciplinary conference drew academic and industry leaders from a variety of ?elds, including physics, astronomy, mat- matics,music,digitalmedia,biologyandengineering. Theconferencealsohosted computer and computational scientists who are designing and building the - ber infrastructure necessary for next-generation computing. Discussions focused on innovative ways to collaborate and how computational science is changing the future of research. ICCS 2009: ‘Compute. Discover. Innovate. ’ was hosted by the Center for Computation and Technology at Louisiana State University in Baton Rouge.

Encyclopedia of Optimization

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Publisher : Springer Science & Business Media
ISBN 13 : 0387747583
Total Pages : 4646 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis Encyclopedia of Optimization by : Christodoulos A. Floudas

Download or read book Encyclopedia of Optimization written by Christodoulos A. Floudas and published by Springer Science & Business Media. This book was released on 2008-09-04 with total page 4646 pages. Available in PDF, EPUB and Kindle. Book excerpt: The goal of the Encyclopedia of Optimization is to introduce the reader to a complete set of topics that show the spectrum of research, the richness of ideas, and the breadth of applications that has come from this field. The second edition builds on the success of the former edition with more than 150 completely new entries, designed to ensure that the reference addresses recent areas where optimization theories and techniques have advanced. Particularly heavy attention resulted in health science and transportation, with entries such as "Algorithms for Genomics", "Optimization and Radiotherapy Treatment Design", and "Crew Scheduling".

BIOMAT 2005

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Publisher : World Scientific
ISBN 13 : 9812567976
Total Pages : 409 pages
Book Rating : 4.8/5 (125 download)

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Book Synopsis BIOMAT 2005 by : Rubem Mondaini

Download or read book BIOMAT 2005 written by Rubem Mondaini and published by World Scientific. This book was released on 2006 with total page 409 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the contributions of the keynote speakers to the BIOMAT 2005 symposium, as well as a collection of selected papers by pioneering researchers. It provides a comprehensive review of the mathematical modeling of cancer development, Alzheimer's disease, malaria, and aneurysm development. Various models for the immune system and epidemiological issues are analyzed and reviewed. The book also explores protein structure prediction by optimization and combinatorial techniques (Steiner trees). The coverage includes bioinformatics issues, regulation of gene expression, evolution, development, DNA and array modeling, and small world networks.

Genome Informatics 2009

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Publisher : World Scientific
ISBN 13 : 1848165633
Total Pages : 243 pages
Book Rating : 4.8/5 (481 download)

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Book Synopsis Genome Informatics 2009 by : Shinichi Morishita

Download or read book Genome Informatics 2009 written by Shinichi Morishita and published by World Scientific. This book was released on 2009 with total page 243 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains papers presented at the 20th International Conference on Genome Informatics (GIW 2009) held at the Pacifico Yokohama, Japan from December 14 to 16, 2009. The GIW Series provides an international forum for the presentation and discussion of original research papers on all aspects of bioinformatics, computational biology and systems biology. Its scope includes biological sequence analysis, protein structure prediction, genetic regulatory networks, bioinformatic algorithms, comparative genomics, and biomolecular data integration and analysis. Boasting a history of 20 years, GIW is the longest-running international bioinformatics conference. A total of 18 contributed papers were selected for presentation at GIW 2009 and for inclusion in this book. In addition, this book contains abstracts from the five invited speakers: Sean Eddy (HHMI's Janelia Farm, USA), Minoru Kanehisa (Kyoto University, Japan), Sang Yup Lee (KAIST, Korea), Hideyuki Okano (Keio University, Japan) and Mark Ragan (University of Queensland, Australia).

Genome Informatics 2009: Genome Informatics Series Vol. 23 - Proceedings Of The 20th International Conference

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Publisher : Imperial College Press
ISBN 13 : 1908978015
Total Pages : 240 pages
Book Rating : 4.9/5 (89 download)

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Book Synopsis Genome Informatics 2009: Genome Informatics Series Vol. 23 - Proceedings Of The 20th International Conference by : Yasubumi Sakakibara

Download or read book Genome Informatics 2009: Genome Informatics Series Vol. 23 - Proceedings Of The 20th International Conference written by Yasubumi Sakakibara and published by Imperial College Press. This book was released on 2009-10-23 with total page 240 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains papers presented at the 20th International Conference on Genome Informatics (GIW 2009) held at the Pacifico Yokohama, Japan from December 14 to 16, 2009. The GIW Series provides an international forum for the presentation and discussion of original research papers on all aspects of bioinformatics, computational biology and systems biology. Its scope includes biological sequence analysis, protein structure prediction, genetic regulatory networks, bioinformatic algorithms, comparative genomics, and biomolecular data integration and analysis. Boasting a history of 20 years, GIW is the longest-running international bioinformatics conference.A total of 18 contributed papers were selected for presentation at GIW 2009 and for inclusion in this book. In addition, this book contains abstracts from the five invited speakers: Sean Eddy (HHMI's Janelia Farm, USA), Minoru Kanehisa (Kyoto University, Japan), Sang Yup Lee (KAIST, Korea), Hideyuki Okano (Keio University, Japan) and Mark Ragan (University of Queensland, Australia)./a

A Physics-based Energy Function for Ab Initio Protein Structure Prediction and Refinement

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ISBN 13 :
Total Pages : 302 pages
Book Rating : 4.:/5 (35 download)

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Book Synopsis A Physics-based Energy Function for Ab Initio Protein Structure Prediction and Refinement by : Matthew Shihhsiu Lin

Download or read book A Physics-based Energy Function for Ab Initio Protein Structure Prediction and Refinement written by Matthew Shihhsiu Lin and published by . This book was released on 2009 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Mathematics—Advances in Research and Application: 2013 Edition

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Publisher : ScholarlyEditions
ISBN 13 : 1481677470
Total Pages : 939 pages
Book Rating : 4.4/5 (816 download)

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Book Synopsis Mathematics—Advances in Research and Application: 2013 Edition by :

Download or read book Mathematics—Advances in Research and Application: 2013 Edition written by and published by ScholarlyEditions. This book was released on 2013-06-21 with total page 939 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematics—Advances in Research and Application: 2013 Edition is a ScholarlyBrief™ that delivers timely, authoritative, comprehensive, and specialized information about ZZZAdditional Research in a concise format. The editors have built Mathematics—Advances in Research and Application: 2013 Edition on the vast information databases of ScholarlyNews.™ You can expect the information about ZZZAdditional Research in this book to be deeper than what you can access anywhere else, as well as consistently reliable, authoritative, informed, and relevant. The content of Mathematics—Advances in Research and Application: 2013 Edition has been produced by the world’s leading scientists, engineers, analysts, research institutions, and companies. All of the content is from peer-reviewed sources, and all of it is written, assembled, and edited by the editors at ScholarlyEditions™ and available exclusively from us. You now have a source you can cite with authority, confidence, and credibility. More information is available at http://www.ScholarlyEditions.com/.

Prediction of Protein Loop Geometries Using a Generalized Born Model of Solvation Effects

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ISBN 13 :
Total Pages : 234 pages
Book Rating : 4.:/5 (843 download)

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Book Synopsis Prediction of Protein Loop Geometries Using a Generalized Born Model of Solvation Effects by : Chaya Rapp

Download or read book Prediction of Protein Loop Geometries Using a Generalized Born Model of Solvation Effects written by Chaya Rapp and published by . This book was released on 1998 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Mathematical Methods for Protein Structure Analysis and Design

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Publisher : Springer Science & Business Media
ISBN 13 : 3540401040
Total Pages : 161 pages
Book Rating : 4.5/5 (44 download)

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Book Synopsis Mathematical Methods for Protein Structure Analysis and Design by : Concettina Guerra

Download or read book Mathematical Methods for Protein Structure Analysis and Design written by Concettina Guerra and published by Springer Science & Business Media. This book was released on 2003-06-25 with total page 161 pages. Available in PDF, EPUB and Kindle. Book excerpt: The papers collected in this volume reproduce contributions by leading sch- arstoaninternationalschoolandworkshopwhichwasorganizedandheldwith thegoaloftakinga snapshotofadiscipline undertumultuous growth. Indeed, the area of protein folding, docking and alignment is developing in response to needs for a mix of heterogeneous expertise spanning biology, chemistry, mathematics, computer science, and statistics, among others. Some of the problems encountered in this area are not only important for the scienti?c challenges they pose, but also for the opportunities they disclose intermsofmedicalandindustrialexploitation. Atypicalexampleiso?eredby protein-drug interaction (docking), a problem posing daunting computational problems at the crossroads of geometry, physics and chemistry, and, at the same time, a problem with unimaginable implications for the pharmacopoeia of the future. The schoolfocused on problems posed by the study of the mechanisms - hind protein folding, and explored di?erent ways of attacking these problems under objective evaluations of the methods. Together with a relatively small core of consolidated knowledge and tools, important re?ections were brought to this e?ort by studies in a multitude of directions and approaches. It is obviously impossible to predict which, if any, among these techniques will prove completely successful, but it is precisely the implicit dialectic among them that best conveys the current ?avor of the ?eld. Such unique diversity and richness inspired the format of the meeting, and also explains the slight departure of the present volume from the typical format in this series: the exposition of the current sediment is complemented here by a selection of quali?ed specialized contributions.

Protein Structure Prediction

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Publisher : Springer Science & Business Media
ISBN 13 : 1592593682
Total Pages : 425 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Protein Structure Prediction by : David Webster

Download or read book Protein Structure Prediction written by David Webster and published by Springer Science & Business Media. This book was released on 2008-02-03 with total page 425 pages. Available in PDF, EPUB and Kindle. Book excerpt: The number of protein sequences grows each year, yet the number of structures deposited in the Protein Data Bank remains relatively small. The importance of protein structure prediction cannot be overemphasized, and this volume is a timely addition to the literature in this field. Protein Structure Prediction: Methods and Protocols is a departure from the normal Methods in Molecular Biology series format. By its very nature, protein structure prediction demands that there be a greater mix of theoretical and practical aspects than is normally seen in this series. This book is aimed at both the novice and the experienced researcher who wish for detailed inf- mation in the field of protein structure prediction; a major intention here is to include important information that is needed in the day-to-day work of a research scientist, important information that is not always decipherable in scientific literature. Protein Structure Prediction: Methods and Protocols covers the topic of protein structure prediction in an eclectic fashion, detailing aspects of pred- tion that range from sequence analysis (a starting point for many algorithms) to secondary and tertiary methods, on into the prediction of docked complexes (an essential point in order to fully understand biological function). As this volume progresses, the authors contribute their expert knowledge of protein structure prediction to many disciplines, such as the identification of motifs and domains, the comparative modeling of proteins, and ab initio approaches to protein loop, side chain, and protein prediction.

Protein Structure Prediction

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Publisher : Internat'l University Line
ISBN 13 : 9780963681775
Total Pages : 540 pages
Book Rating : 4.6/5 (817 download)

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Book Synopsis Protein Structure Prediction by : Igor F. Tsigelny

Download or read book Protein Structure Prediction written by Igor F. Tsigelny and published by Internat'l University Line. This book was released on 2002 with total page 540 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Chemical Engineering Progress

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ISBN 13 :
Total Pages : 940 pages
Book Rating : 4.:/5 (318 download)

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Book Synopsis Chemical Engineering Progress by :

Download or read book Chemical Engineering Progress written by and published by . This book was released on 2006 with total page 940 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Protein Loop Structure Prediction

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (951 download)

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Book Synopsis Protein Loop Structure Prediction by : Yoonjoo Choi

Download or read book Protein Loop Structure Prediction written by Yoonjoo Choi and published by . This book was released on 2011 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Protein Structure by Distance Analysis

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ISBN 13 :
Total Pages : 366 pages
Book Rating : 4.:/5 (89 download)

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Book Synopsis Protein Structure by Distance Analysis by : Henrik Bohr

Download or read book Protein Structure by Distance Analysis written by Henrik Bohr and published by . This book was released on 1994 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction (Henrik Bohr and Soren Brunak). Protein structure prediction (Shankar Subramaniam). Structures from X-Ray Crystallography illustrated by proteins with prosthetic groups (Sine Larsen, Anders Kadziola and Jens F. W. Petersen). Function and three-dimensional structure odf proteins using nuclear magnetic resonance spectroscopy (Flemming M. Poulsen). Experimental aspects of ultr-violet and circular dichroism methods for protein folding (Hans E. M. Christensen, Jan M. Hammerstad-Pedersen, arne Holm, Gitte Iversen and Jens Ulstrup). Probing protein structure by solvent perturbation of NMR spectra: III. Combination of experiment and theory (Gennaro esposito, Arthur M. Lesk, Henriette Molinari Andrea Motta, Neri Niccolai and Annalisa Pastore). Comparative protein modeling by satisfaction of spatial restraints (Andrej Sali and Tom Blundell). Recurrent Neural Networks for protein distance matrix prediction (Martin Reczko and Henrik Bohr). Growth of domains in distance geometry through protein folding (Henry Bohr, Jin Wang and Peter Wolynes). Predictive power of mean force pair potentials (Manfred J. Sippl and Markus Jaritz). Optimized energy functions for tertiary structure prediction and recognition (Richard A. Goldstein, Zan A. Luthey-Schulten and Peter G. Wolynes). Prediction of 3D structures of globular proteins based on self-consistent molecular field theory (Alexei V. Finkelstein, Rumen A. Dimitrov, Aza Ya, Badretdinov and Boris A. Reva). A potential function that identifies correct protein folds (Gordon M. Crippen and Vladimir N. Maiorov). Genetic algorithm codings used in protein structure prediction by energy minimization (Frank Hermann). Super-secondary structures in proteins (Alexander V. Efimov). Design of model fast-folding proteins (Eugene I. Shakhnovich). Modelling and predicting protein structure using distance geometry (Willian R. taylor and András Aszódi). Modelling secondary structure formation by distance geometry techniques (András Aszódi and Willian R. taylor). A library of signature pentapeptides for the protein data bank (Ikuo Uchiyama, Atsushi Ogiwara, and Minoru Kanehisa). Glycosylation and protein conformation ( Jan E. Hansen, Ole Lund, Khistoffer Rapacki, Henrik Clausen, Erik Mosekilde, Jens O. Nielsen and John-Erik S. Hansen). 1D secondary structure prediction through evolutionary profiles (Burkhard Rost and Chris Sander). Fold-class prediction by neural network (Martin Reczko, Henrik Bohr, Shankar Subramaniam, Sudhakar Pamidighantam and Artemis Hatzigeorgiou). Distance-based approaches to protein structure-function analysis (Michael N. Liebman). Quantification odf secondary structure prediction improvement using distantly related proteins (Jonathan M. Levin, Steffano Pascarella, Patrick Argos and Jean Garnier). Delineating the mainchain topology of four-helix bundle proteins using the genetic algorithm and knowledge based on the amino acid sequence alone ( Patrick Argos and Thomas Dandekar). Correlation between protein secondary structure and the nRNA nucleotide sequence (Soren Brunak, Jacob Engelbrecht and Can Kesmir).

Protein Structure Prediction

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (89 download)

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Book Synopsis Protein Structure Prediction by : Rinaldo Wander Montalvão

Download or read book Protein Structure Prediction written by Rinaldo Wander Montalvão and published by . This book was released on 2006 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: