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Practical R For Biologists
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Book Synopsis Practical R for Biologists by : Donald L.J. Quicke
Download or read book Practical R for Biologists written by Donald L.J. Quicke and published by CABI. This book was released on 2020-12-21 with total page 423 pages. Available in PDF, EPUB and Kindle. Book excerpt: R is a freely available, open-source statistical programming environment which provides powerful statistical analysis tools and graphics outputs. R is now used by a very wide range of people; biologists (the primary audience of this book), but also all other scientists and engineers, economists, market researchers and medical professionals. R users with expertise are constantly adding new associated packages, and the range already available is immense. This text works through a set of studies that collectively represent almost all the R operations that biology students need in order to analyse their own data. The material is designed to serve students from first year undergraduates through to those beginning post graduate levels. Chapters are organized around topics such as graphing, classical statistical tests, statistical modelling, mapping, and text parsing. Examples are based on real scientific studies, and each one covers the use of more R functions than those simply necessary to get a p-value or plot.
Book Synopsis Practical Statistics for Field Biology by : Jim Fowler
Download or read book Practical Statistics for Field Biology written by Jim Fowler and published by John Wiley & Sons. This book was released on 2013-06-20 with total page 235 pages. Available in PDF, EPUB and Kindle. Book excerpt: Provides an excellent introductory text for students on the principles and methods of statistical analysis in the life sciences, helping them choose and analyse statistical tests for their own problems and present their findings. An understanding of statistical principles and methods is essential for any scientist but is particularly important for those in the life sciences. The field biologist faces very particular problems and challenges with statistics as "real-life" situations such as collecting insects with a sweep net or counting seagulls on a cliff face can hardly be expected to be as reliable or controllable as a laboratory-based experiment. Acknowledging the peculiarites of field-based data and its interpretation, this book provides a superb introduction to statistical analysis helping students relate to their particular and often diverse data with confidence and ease. To enhance the usefulness of this book, the new edition incorporates the more advanced method of multivariate analysis, introducing the nature of multivariate problems and describing the the techniques of principal components analysis, cluster analysis and discriminant analysis which are all applied to biological examples. An appendix detailing the statistical computing packages available has also been included. It will be extremely useful to undergraduates studying ecology, biology, and earth and environmental sciences and of interest to postgraduates who are not familiar with the application of multiavirate techniques and practising field biologists working in these areas.
Book Synopsis Introduction to Bioinformatics with R by : Edward Curry
Download or read book Introduction to Bioinformatics with R written by Edward Curry and published by CRC Press. This book was released on 2020-11-02 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: In biological research, the amount of data available to researchers has increased so much over recent years, it is becoming increasingly difficult to understand the current state of the art without some experience and understanding of data analytics and bioinformatics. An Introduction to Bioinformatics with R: A Practical Guide for Biologists leads the reader through the basics of computational analysis of data encountered in modern biological research. With no previous experience with statistics or programming required, readers will develop the ability to plan suitable analyses of biological datasets, and to use the R programming environment to perform these analyses. This is achieved through a series of case studies using R to answer research questions using molecular biology datasets. Broadly applicable statistical methods are explained, including linear and rank-based correlation, distance metrics and hierarchical clustering, hypothesis testing using linear regression, proportional hazards regression for survival data, and principal component analysis. These methods are then applied as appropriate throughout the case studies, illustrating how they can be used to answer research questions. Key Features: · Provides a practical course in computational data analysis suitable for students or researchers with no previous exposure to computer programming. · Describes in detail the theoretical basis for statistical analysis techniques used throughout the textbook, from basic principles · Presents walk-throughs of data analysis tasks using R and example datasets. All R commands are presented and explained in order to enable the reader to carry out these tasks themselves. · Uses outputs from a large range of molecular biology platforms including DNA methylation and genotyping microarrays; RNA-seq, genome sequencing, ChIP-seq and bisulphite sequencing; and high-throughput phenotypic screens. · Gives worked-out examples geared towards problems encountered in cancer research, which can also be applied across many areas of molecular biology and medical research. This book has been developed over years of training biological scientists and clinicians to analyse the large datasets available in their cancer research projects. It is appropriate for use as a textbook or as a practical book for biological scientists looking to gain bioinformatics skills.
Book Synopsis An Introduction to Basic Statistics for Biologists Using R by : Colin D. Macleod
Download or read book An Introduction to Basic Statistics for Biologists Using R written by Colin D. Macleod and published by Practical Statistics for Biolo. This book was released on 2020-04-14 with total page 244 pages. Available in PDF, EPUB and Kindle. Book excerpt: This wrokbook provides biologists with an easy-to-follow introduction to conducting statistical analysis in R. It does this through a series of practical exercises based on easy-to-follow flow diagrams that show biologists exactly how to do a variety of key tasks.
Book Synopsis Biostatistical Design and Analysis Using R by : Dr Murray Logan
Download or read book Biostatistical Design and Analysis Using R written by Dr Murray Logan and published by John Wiley & Sons. This book was released on 2011-09-20 with total page 578 pages. Available in PDF, EPUB and Kindle. Book excerpt: R — the statistical and graphical environment is rapidly emerging as an important set of teaching and research tools for biologists. This book draws upon the popularity and free availability of R to couple the theory and practice of biostatistics into a single treatment, so as to provide a textbook for biologists learning statistics, R, or both. An abridged description of biostatistical principles and analysis sequence keys are combined together with worked examples of the practical use of R into a complete practical guide to designing and analyzing real biological research. Topics covered include: simple hypothesis testing, graphing exploratory data analysis and graphical summaries regression (linear, multi and non-linear) simple and complex ANOVA and ANCOVA designs (including nested, factorial, blocking, spit-plot and repeated measures) frequency analysis and generalized linear models. Linear mixed effects modeling is also incorporated extensively throughout as an alternative to traditional modeling techniques. The book is accompanied by a companion website www.wiley.com/go/logan/r with an extensive set of resources comprising all R scripts and data sets used in the book, additional worked examples, the biology package, and other instructional materials and links.
Book Synopsis Practical Computing for Biologists by : Steven H.D. Haddock
Download or read book Practical Computing for Biologists written by Steven H.D. Haddock and published by Sinauer. This book was released on 2011-04-22 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Practical Computing for Biologists shows you how to use many freely available computing tools to work more powerfully and effectively. The book was born out of the authors' own experience in developing tools for their research and helping other biologists with their computational problems. Many of the techniques are relevant to molecular bioinformatics but the scope of the book is much broader, covering topics and techniques that are applicable to a range of scientific endeavours. Twenty-two chapters organized into six parts address the following topics (and more; see Contents): • Searching with regular expressions • The Unix command line • Python programming and debugging • Creating and editing graphics • Databases • Performing analyses on remote servers • Working with electronics While the main narrative focuses on Mac OS X, most of the concepts and examples apply to any operating system. Where there are differences for Windows and Linux users, parallel instructions are provided in the margin and in an appendix. The book is designed to be used as a self-guided resource for researchers, a companion book in a course, or as a primary textbook. Practical Computing for Biologists will free you from the most frustrating and time-consuming aspects of data processing so you can focus on the pleasures of scientific inquiry.
Book Synopsis R Programming for Bioinformatics by : Robert Gentleman
Download or read book R Programming for Bioinformatics written by Robert Gentleman and published by CRC Press. This book was released on 2008-07-14 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: Due to its data handling and modeling capabilities as well as its flexibility, R is becoming the most widely used software in bioinformatics. R Programming for Bioinformatics explores the programming skills needed to use this software tool for the solution of bioinformatics and computational biology problems.Drawing on the author's first-hand exper
Book Synopsis Foundational and Applied Statistics for Biologists Using R by : Ken A. Aho
Download or read book Foundational and Applied Statistics for Biologists Using R written by Ken A. Aho and published by CRC Press. This book was released on 2016-03-09 with total page 598 pages. Available in PDF, EPUB and Kindle. Book excerpt: Full of biological applications, exercises, and interactive graphical examples, this text presents comprehensive coverage of both modern analytical methods and statistical foundations. The author harnesses the inherent properties of the R environment to enable students to examine the code of complicated procedures step by step and thus better understand the process of obtaining analysis results. The graphical capabilities of R are used to provide interactive demonstrations of simple to complex statistical concepts. R code and other materials are available online.
Book Synopsis New Statistics with R by : Andy Hector
Download or read book New Statistics with R written by Andy Hector and published by Oxford University Press. This book was released on 2015 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical methods are a key tool for all scientists working with data, but learning the basic mathematical skills can be one of the most challenging components of a biologist's training. This accessible book provides a contemporary introduction to the classical techniques and modern extensions of linear model analysis: one of the most useful approaches in the analysis of scientific data in the life and environmental sciences. It emphasizes an estimation-based approach that accounts for recent criticisms of the over-use of probability values, and introduces alternative approaches using information criteria. Statistics are introduced through worked analyses performed in R, the free open source programming language for statistics and graphics, which is rapidly becoming the standard software in many areas of science and technology. These analyses use real data sets from ecology, evolutionary biology and environmental science, and the data sets and R scripts are available as support material. The book's structure and user friendly style stem from the author's 20 years of experience teaching statistics to life and environmental scientists at both the undergraduate and graduate levels. The New Statistics with R is suitable for senior undergraduate and graduate students, professional researchers, and practitioners in the fields of ecology, evolution, environmental studies, and computational biology.
Book Synopsis R for Data Science by : Hadley Wickham
Download or read book R for Data Science written by Hadley Wickham and published by "O'Reilly Media, Inc.". This book was released on 2016-12-12 with total page 521 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn how to use R to turn raw data into insight, knowledge, and understanding. This book introduces you to R, RStudio, and the tidyverse, a collection of R packages designed to work together to make data science fast, fluent, and fun. Suitable for readers with no previous programming experience, R for Data Science is designed to get you doing data science as quickly as possible. Authors Hadley Wickham and Garrett Grolemund guide you through the steps of importing, wrangling, exploring, and modeling your data and communicating the results. You'll get a complete, big-picture understanding of the data science cycle, along with basic tools you need to manage the details. Each section of the book is paired with exercises to help you practice what you've learned along the way. You'll learn how to: Wrangle—transform your datasets into a form convenient for analysis Program—learn powerful R tools for solving data problems with greater clarity and ease Explore—examine your data, generate hypotheses, and quickly test them Model—provide a low-dimensional summary that captures true "signals" in your dataset Communicate—learn R Markdown for integrating prose, code, and results
Book Synopsis Practical R for Biologists by : Donald L. J. Quicke
Download or read book Practical R for Biologists written by Donald L. J. Quicke and published by . This book was released on 2021 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: "A new textbook showing beginners how to use the free programming language R for fundamental biostatistical analysis, graphical display, and experimental design. The book takes a simple step-by-step approach to give a good grounding in the use of R for undergraduate/beginning postgraduate biology students"--
Book Synopsis Statistics for Biologists by : Richard Colin Campbell
Download or read book Statistics for Biologists written by Richard Colin Campbell and published by . This book was released on 1967-11-02 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Computational Biology by : Röbbe Wünschiers
Download or read book Computational Biology written by Röbbe Wünschiers and published by Springer Science & Business Media. This book was released on 2013-01-30 with total page 453 pages. Available in PDF, EPUB and Kindle. Book excerpt: This greatly expanded 2nd edition provides a practical introduction to - data processing with Linux tools and the programming languages AWK and Perl - data management with the relational database system MySQL, and - data analysis and visualization with the statistical computing environment R for students and practitioners in the life sciences. Although written for beginners, experienced researchers in areas involving bioinformatics and computational biology may benefit from numerous tips and tricks that help to process, filter and format large datasets. Learning by doing is the basic concept of this book. Worked examples illustrate how to employ data processing and analysis techniques, e.g. for - finding proteins potentially causing pathogenicity in bacteria, - supporting the significance of BLAST with homology modeling, or - detecting candidate proteins that may be redox-regulated, on the basis of their structure. All the software tools and datasets used are freely available. One section is devoted to explaining setup and maintenance of Linux as an operating system independent virtual machine. The author's experiences and knowledge gained from working and teaching in both academia and industry constitute the foundation for this practical approach.
Book Synopsis Bioinformatics Data Skills by : Vince Buffalo
Download or read book Bioinformatics Data Skills written by Vince Buffalo and published by "O'Reilly Media, Inc.". This book was released on 2015-07 with total page 538 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn the data skills necessary for turning large sequencing datasets into reproducible and robust biological findings. With this practical guide, youâ??ll learn how to use freely available open source tools to extract meaning from large complex biological data sets. At no other point in human history has our ability to understand lifeâ??s complexities been so dependent on our skills to work with and analyze data. This intermediate-level book teaches the general computational and data skills you need to analyze biological data. If you have experience with a scripting language like Python, youâ??re ready to get started. Go from handling small problems with messy scripts to tackling large problems with clever methods and tools Process bioinformatics data with powerful Unix pipelines and data tools Learn how to use exploratory data analysis techniques in the R language Use efficient methods to work with genomic range data and range operations Work with common genomics data file formats like FASTA, FASTQ, SAM, and BAM Manage your bioinformatics project with the Git version control system Tackle tedious data processing tasks with with Bash scripts and Makefiles
Book Synopsis Practical Statistics for Data Scientists by : Peter Bruce
Download or read book Practical Statistics for Data Scientists written by Peter Bruce and published by "O'Reilly Media, Inc.". This book was released on 2017-05-10 with total page 395 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical methods are a key part of of data science, yet very few data scientists have any formal statistics training. Courses and books on basic statistics rarely cover the topic from a data science perspective. This practical guide explains how to apply various statistical methods to data science, tells you how to avoid their misuse, and gives you advice on what's important and what's not. Many data science resources incorporate statistical methods but lack a deeper statistical perspective. If you’re familiar with the R programming language, and have some exposure to statistics, this quick reference bridges the gap in an accessible, readable format. With this book, you’ll learn: Why exploratory data analysis is a key preliminary step in data science How random sampling can reduce bias and yield a higher quality dataset, even with big data How the principles of experimental design yield definitive answers to questions How to use regression to estimate outcomes and detect anomalies Key classification techniques for predicting which categories a record belongs to Statistical machine learning methods that “learn” from data Unsupervised learning methods for extracting meaning from unlabeled data
Book Synopsis Experimental Design for Laboratory Biologists by : Stanley E. Lazic
Download or read book Experimental Design for Laboratory Biologists written by Stanley E. Lazic and published by Cambridge University Press. This book was released on 2016-12-08 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: Specifically intended for lab-based biomedical researchers, this practical guide shows how to design experiments that are reproducible, with low bias, high precision, and widely applicable results. With specific examples from research using both cell cultures and model organisms, it explores key ideas in experimental design, assesses common designs, and shows how to plan a successful experiment. It demonstrates how to control biological and technical factors that can introduce bias or add noise, and covers rarely discussed topics such as graphical data exploration, choosing outcome variables, data quality control checks, and data pre-processing. It also shows how to use R for analysis, and is designed for those with no prior experience. An accompanying website (https://stanlazic.github.io/EDLB.html) includes all R code, data sets, and the labstats R package. This is an ideal guide for anyone conducting lab-based biological research, from students to principle investigators working in either academia or industry.
Book Synopsis Practical Conservation Biology by : David Lindenmayer
Download or read book Practical Conservation Biology written by David Lindenmayer and published by CSIRO PUBLISHING. This book was released on 2005 with total page 625 pages. Available in PDF, EPUB and Kindle. Book excerpt: Provides the essential framework for under-graduate and post-graduate courses in conservation biology and natural resource management by covering the complete array of topics central to these fields. Lindenmayer from ANU, ACT and Burgman from University of Melbourne, Vic.
