Structure and Function of Membrane Proteins

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Publisher : Humana
ISBN 13 : 9781071613931
Total Pages : 358 pages
Book Rating : 4.6/5 (139 download)

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Book Synopsis Structure and Function of Membrane Proteins by : Ingeborg Schmidt-Krey

Download or read book Structure and Function of Membrane Proteins written by Ingeborg Schmidt-Krey and published by Humana. This book was released on 2021-04-21 with total page 358 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book examines detailed experimental and computational approaches for the analysis of many aspects vital to the understanding of membrane protein structure and function. Readers will receive guidance on the selection and use of methods for over-expression and purification, tools to characterize membrane proteins within different phospholipid bilayers, direction on functional studies, and approaches to determine the structures of membrane proteins. Detailed experimental steps for specific membrane proteins with critical notes allow the protocols to be modified to different systems. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of practical information and implementation advice that leads to excellent, reproducible results. Authoritative and up-to-date, Structure and Function Studies of Membrane Proteins serves as an ideal guide for biologists, biochemists, and biophysicists striving to further understand these essential proteins and their many biological roles.

Molecular Dynamics

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Publisher : Elsevier
ISBN 13 : 0080536840
Total Pages : 971 pages
Book Rating : 4.0/5 (85 download)

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Book Synopsis Molecular Dynamics by : Perla Balbuena

Download or read book Molecular Dynamics written by Perla Balbuena and published by Elsevier. This book was released on 1999-04-22 with total page 971 pages. Available in PDF, EPUB and Kindle. Book excerpt: The latest developments in quantum and classical molecular dynamics, related techniques, and their applications to several fields of science and engineering. Molecular simulations include a broad range of methodologies such as Monte Carlo, Brownian dynamics, lattice dynamics, and molecular dynamics (MD).Features of this book:• Presents advances in methodologies, introduces quantum methods and lists new techniques for classical MD• Deals with complex systems: biomolecules, aqueous solutions, ice and clathrates, liquid crystals, polymers• Provides chemical reactions, interfaces, catalysis, surface phenomena and solidsAlthough the book is not formally divided into methods and applications, the chapters are arranged starting with those that discuss new algorithms, methods and techniques, followed by several important applications.

Bridging the Time Scales

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Publisher : Springer Science & Business Media
ISBN 13 : 3540458379
Total Pages : 498 pages
Book Rating : 4.5/5 (44 download)

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Book Synopsis Bridging the Time Scales by : Peter Nielaba

Download or read book Bridging the Time Scales written by Peter Nielaba and published by Springer Science & Business Media. This book was released on 2007-10-13 with total page 498 pages. Available in PDF, EPUB and Kindle. Book excerpt: The behaviour of many complex materials extends over time- and lengthscales well beyond those that can normally be described using standard molecular dynamics or Monte Carlo simulation techniques. As progress is coming more through refined simulation methods than from increased computer power, this volume is intended as both an introduction and a review of all relevant modern methods that will shape molecular simulation in the forthcoming decade. Written as a set of tutorial reviews, the book will be of use to specialists and nonspecialists alike.

Hierarchical Methods for Dynamics in Complex Molecular Systems

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Publisher : Forschungszentrum Jülich
ISBN 13 : 3893367683
Total Pages : 557 pages
Book Rating : 4.8/5 (933 download)

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Book Synopsis Hierarchical Methods for Dynamics in Complex Molecular Systems by : Johannes Grotendorst

Download or read book Hierarchical Methods for Dynamics in Complex Molecular Systems written by Johannes Grotendorst and published by Forschungszentrum Jülich. This book was released on 2012 with total page 557 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Understanding Molecular Simulation

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Publisher : Elsevier
ISBN 13 : 0080519989
Total Pages : 661 pages
Book Rating : 4.0/5 (85 download)

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Book Synopsis Understanding Molecular Simulation by : Daan Frenkel

Download or read book Understanding Molecular Simulation written by Daan Frenkel and published by Elsevier. This book was released on 2001-10-19 with total page 661 pages. Available in PDF, EPUB and Kindle. Book excerpt: Understanding Molecular Simulation: From Algorithms to Applications explains the physics behind the "recipes" of molecular simulation for materials science. Computer simulators are continuously confronted with questions concerning the choice of a particular technique for a given application. A wide variety of tools exist, so the choice of technique requires a good understanding of the basic principles. More importantly, such understanding may greatly improve the efficiency of a simulation program. The implementation of simulation methods is illustrated in pseudocodes and their practical use in the case studies used in the text. Since the first edition only five years ago, the simulation world has changed significantly -- current techniques have matured and new ones have appeared. This new edition deals with these new developments; in particular, there are sections on: - Transition path sampling and diffusive barrier crossing to simulaterare events - Dissipative particle dynamic as a course-grained simulation technique - Novel schemes to compute the long-ranged forces - Hamiltonian and non-Hamiltonian dynamics in the context constant-temperature and constant-pressure molecular dynamics simulations - Multiple-time step algorithms as an alternative for constraints - Defects in solids - The pruned-enriched Rosenbluth sampling, recoil-growth, and concerted rotations for complex molecules - Parallel tempering for glassy Hamiltonians Examples are included that highlight current applications and the codes of case studies are available on the World Wide Web. Several new examples have been added since the first edition to illustrate recent applications. Questions are included in this new edition. No prior knowledge of computer simulation is assumed.

Approximation of Large-Scale Dynamical Systems

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Publisher : SIAM
ISBN 13 : 0898716586
Total Pages : 489 pages
Book Rating : 4.8/5 (987 download)

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Book Synopsis Approximation of Large-Scale Dynamical Systems by : Athanasios C. Antoulas

Download or read book Approximation of Large-Scale Dynamical Systems written by Athanasios C. Antoulas and published by SIAM. This book was released on 2009-06-25 with total page 489 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical models are used to simulate, and sometimes control, the behavior of physical and artificial processes such as the weather and very large-scale integration (VLSI) circuits. The increasing need for accuracy has led to the development of highly complex models. However, in the presence of limited computational accuracy and storage capabilities model reduction (system approximation) is often necessary. Approximation of Large-Scale Dynamical Systems provides a comprehensive picture of model reduction, combining system theory with numerical linear algebra and computational considerations. It addresses the issue of model reduction and the resulting trade-offs between accuracy and complexity. Special attention is given to numerical aspects, simulation questions, and practical applications.

Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics

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Publisher : Frontiers Media SA
ISBN 13 : 2889719928
Total Pages : 164 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics by : Xiakun Chu

Download or read book Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics written by Xiakun Chu and published by Frontiers Media SA. This book was released on 2022-01-07 with total page 164 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Large-Scale Disasters

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Publisher : Cambridge University Press
ISBN 13 : 1139472291
Total Pages : 569 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Large-Scale Disasters by : Mohamed Gad-el-Hak

Download or read book Large-Scale Disasters written by Mohamed Gad-el-Hak and published by Cambridge University Press. This book was released on 2008-06-23 with total page 569 pages. Available in PDF, EPUB and Kindle. Book excerpt: 'Extreme' events - including climatic events, such as hurricanes, tornadoes, drought - can cause massive disruption to society, including large death tolls and property damage in the billions of dollars. Events in recent years have shown the importance of being prepared and that countries need to work together to help alleviate the resulting pain and suffering. This volume presents an integrated review of the broad research field of large-scale disasters. It establishes a common framework for predicting, controlling and managing both manmade and natural disasters. There is a particular focus on events caused by weather and climate change. Other topics include air pollution, tsunamis, disaster modeling, the use of remote sensing and the logistics of disaster management. It will appeal to scientists, engineers, first responders and health-care professionals, in addition to graduate students and researchers who have an interest in the prediction, prevention or mitigation of large-scale disasters.

Special Purpose Computers

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Publisher : Academic Press
ISBN 13 : 1483266982
Total Pages : 294 pages
Book Rating : 4.4/5 (832 download)

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Book Synopsis Special Purpose Computers by : Berni J. Alder

Download or read book Special Purpose Computers written by Berni J. Alder and published by Academic Press. This book was released on 2014-05-10 with total page 294 pages. Available in PDF, EPUB and Kindle. Book excerpt: Special Purpose Computers describes special-purpose computers and compares them to general-purpose computers in terms of speed and cost. Examples of computers that were designed for the efficient solution of long established algorithms are given, including Navier-Stokes hydrodynamic solvers, classical molecular dynamic machines, and Ising model computers. Comprised of seven chapters, this volume begins by documenting the progress of the CalTech Concurrent Computation Program and its evolution from computational high-energy physics to a supercomputer initiative, with emphasis on the lessons learned including computer architecture issues and the trade-offs between in-house and commercial development. The reader is then introduced to the QCD Machine, a special-purpose parallel supercomputer that was designed and built to solve the lattice quantum chromodynamics problem. Subsequent chapters focus on the Geometry-Defining Processors and their application to the solution of partial differential equations; the Navier-Stokes computer; parallel processing using the Loosely Coupled Array of Processors (LCAP) system; and the Delft Ising system processor. The design and implementation of the Delft molecular-dynamics processor are also described. This book will be of interest to computer engineers and designers.

Computational Methods In Large Scale Simulation

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Publisher : World Scientific
ISBN 13 : 9814480207
Total Pages : 395 pages
Book Rating : 4.8/5 (144 download)

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Book Synopsis Computational Methods In Large Scale Simulation by : Heow-pueh Lee

Download or read book Computational Methods In Large Scale Simulation written by Heow-pueh Lee and published by World Scientific. This book was released on 2005-10-26 with total page 395 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume documents the research carried out by visiting scientists attached to the Institute for Mathematical Sciences (IMS) at the National University of Singapore and the Institute of High Performance Computing (IHPC) under the program “Advances and Mathematical Issues in Large Scale Simulation.” From 2002 to 2003, researchers from various countries gathered to initiate interesting and innovative work on various themes related to multiscale simulation and fast algorithms.Today, modeling and simulation are used extensively to solve complex problems and to reduce the use of experimentation during the design and analysis stage. It is important to know the various issues that have to be considered in the successful development of computational methodologies for such work.This volume is a compilation of the research by various visiting scientists in the area of modeling and multiscale simulation. Each article covers a major project and documents how computational methodology, mathematical modeling, high performance computing and simulation are combined in a multiscale scheme to solve a variety of complex problems. Some of these include the design, synthesis, processing, characterization and manufacture of nanomaterials and nanostructures, new algorithms for computational work, and grid computing.Through the included examples, readers can realize the vast potential of computational modeling and large scale simulation for the solution of problems in a variety of disciplines and applications.

Atomistic Modeling of Materials Failure

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Publisher : Springer Science & Business Media
ISBN 13 : 0387764267
Total Pages : 547 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis Atomistic Modeling of Materials Failure by : Markus J. Buehler

Download or read book Atomistic Modeling of Materials Failure written by Markus J. Buehler and published by Springer Science & Business Media. This book was released on 2008-08-07 with total page 547 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is an introduction to molecular and atomistic modeling techniques applied to fracture and deformation of solids, focusing on a variety of brittle, ductile, geometrically confined and biological materials. The overview includes computational methods and techniques operating at the atomic scale, and describes how these techniques can be used to model cracks and other deformation mechanisms. The book aims to make new molecular modeling techniques available to a wider community.

Large Scale Computational Physics On Massively Parallel Computers

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Publisher : World Scientific
ISBN 13 : 9814552038
Total Pages : 296 pages
Book Rating : 4.8/5 (145 download)

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Book Synopsis Large Scale Computational Physics On Massively Parallel Computers by : Hans J Herrmann

Download or read book Large Scale Computational Physics On Massively Parallel Computers written by Hans J Herrmann and published by World Scientific. This book was released on 1993-12-27 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: Contents:A Lattice Solid Model for the Nonlinear Dynamics of Earthquakes (P Mora & D Place)Vectorized and Parallelized Algorithms for Multi-Million Particle MD-Simulations (W Form et al)Green-Function Method for Electronic Structure of Periodic Crystals (R Zeller)Parallelization of the Ising Simulation (N Ito)A Nonlocal Approach to Vertex Models and Quantum Spin Systems (H G Evertz & M Marcu)The Static Quark-Antiquark-Potential: A ‘Classical’ Experiment on the Connection Machine CM-2 (K Schilling & G S Bali)Determination of Monopole Current Clusters in Four-Dimensional Quantum Electrodynamics (A Bode et al)QCD Calculations on the QCDPAX (K Kanaya)UKQCD — Recent Results and Future Prospects (R Kenway)Programming Tools for Parallel Computers (K J M Moriarity & T Trappenberg)Workstation Clusters: One Way to Parallel Computing (M Weber)APE100 and Beyond (R Tripiccione)and other papers Readership: Computational physicists. keywords:

Clay-water Interface and Its Rheological Implications

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Publisher :
ISBN 13 :
Total Pages : 264 pages
Book Rating : 4.:/5 (318 download)

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Book Synopsis Clay-water Interface and Its Rheological Implications by : Necip Güven

Download or read book Clay-water Interface and Its Rheological Implications written by Necip Güven and published by . This book was released on 1992 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Large Scale Dynamics of Interacting Particles

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Publisher : Springer Science & Business Media
ISBN 13 : 3642843719
Total Pages : 346 pages
Book Rating : 4.6/5 (428 download)

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Book Synopsis Large Scale Dynamics of Interacting Particles by : Herbert Spohn

Download or read book Large Scale Dynamics of Interacting Particles written by Herbert Spohn and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 346 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book deals with one of the fundamental problems of nonequilibrium statistical mechanics: the explanation of large-scale dynamics (evolution differential equations) from models of a very large number of interacting particles. This book addresses both researchers and students. Much of the material presented has never been published in book-form before.

Numerical Simulation in Molecular Dynamics

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Publisher : Springer Science & Business Media
ISBN 13 : 3540680950
Total Pages : 472 pages
Book Rating : 4.5/5 (46 download)

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Book Synopsis Numerical Simulation in Molecular Dynamics by : Michael Griebel

Download or read book Numerical Simulation in Molecular Dynamics written by Michael Griebel and published by Springer Science & Business Media. This book was released on 2007-08-16 with total page 472 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book details the necessary numerical methods, the theoretical background and foundations and the techniques involved in creating computer particle models, including linked-cell method, SPME-method, tree codes, amd multipol technique. It illustrates modeling, discretization, algorithms and their parallel implementation with MPI on computer systems with distributed memory. The text offers step-by-step explanations of numerical simulation, providing illustrative code examples. With the description of the algorithms and the presentation of the results of various simulations from fields such as material science, nanotechnology, biochemistry and astrophysics, the reader of this book will learn how to write programs capable of running successful experiments for molecular dynamics.

Large Scale Eigenvalue Problems

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Publisher : Elsevier
ISBN 13 : 0080872387
Total Pages : 339 pages
Book Rating : 4.0/5 (88 download)

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Book Synopsis Large Scale Eigenvalue Problems by : J. Cullum

Download or read book Large Scale Eigenvalue Problems written by J. Cullum and published by Elsevier. This book was released on 1986-01-01 with total page 339 pages. Available in PDF, EPUB and Kindle. Book excerpt: Results of research into large scale eigenvalue problems are presented in this volume. The papers fall into four principal categories:novel algorithms for solving large eigenvalue problems, novel computer architectures, computationally-relevant theoretical analyses, and problems where large scale eigenelement computations have provided new insight.

The Art of Molecular Dynamics Simulation

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Publisher : Cambridge University Press
ISBN 13 : 9780521825689
Total Pages : 568 pages
Book Rating : 4.8/5 (256 download)

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Book Synopsis The Art of Molecular Dynamics Simulation by : D. C. Rapaport

Download or read book The Art of Molecular Dynamics Simulation written by D. C. Rapaport and published by Cambridge University Press. This book was released on 2004-04 with total page 568 pages. Available in PDF, EPUB and Kindle. Book excerpt: First time paperback of successful physics monograph. Copyright © Libri GmbH. All rights reserved.