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Molecular Dynamics On A Grand Scale
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Book Synopsis Structure and Function of Membrane Proteins by : Ingeborg Schmidt-Krey
Download or read book Structure and Function of Membrane Proteins written by Ingeborg Schmidt-Krey and published by Humana. This book was released on 2021-04-21 with total page 358 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book examines detailed experimental and computational approaches for the analysis of many aspects vital to the understanding of membrane protein structure and function. Readers will receive guidance on the selection and use of methods for over-expression and purification, tools to characterize membrane proteins within different phospholipid bilayers, direction on functional studies, and approaches to determine the structures of membrane proteins. Detailed experimental steps for specific membrane proteins with critical notes allow the protocols to be modified to different systems. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of practical information and implementation advice that leads to excellent, reproducible results. Authoritative and up-to-date, Structure and Function Studies of Membrane Proteins serves as an ideal guide for biologists, biochemists, and biophysicists striving to further understand these essential proteins and their many biological roles.
Book Synopsis Molecular Dynamics by : Perla Balbuena
Download or read book Molecular Dynamics written by Perla Balbuena and published by Elsevier. This book was released on 1999-04-22 with total page 971 pages. Available in PDF, EPUB and Kindle. Book excerpt: The latest developments in quantum and classical molecular dynamics, related techniques, and their applications to several fields of science and engineering. Molecular simulations include a broad range of methodologies such as Monte Carlo, Brownian dynamics, lattice dynamics, and molecular dynamics (MD).Features of this book:• Presents advances in methodologies, introduces quantum methods and lists new techniques for classical MD• Deals with complex systems: biomolecules, aqueous solutions, ice and clathrates, liquid crystals, polymers• Provides chemical reactions, interfaces, catalysis, surface phenomena and solidsAlthough the book is not formally divided into methods and applications, the chapters are arranged starting with those that discuss new algorithms, methods and techniques, followed by several important applications.
Book Synopsis Special Purpose Computers by : Berni J. Alder
Download or read book Special Purpose Computers written by Berni J. Alder and published by Academic Press. This book was released on 2014-05-10 with total page 294 pages. Available in PDF, EPUB and Kindle. Book excerpt: Special Purpose Computers describes special-purpose computers and compares them to general-purpose computers in terms of speed and cost. Examples of computers that were designed for the efficient solution of long established algorithms are given, including Navier-Stokes hydrodynamic solvers, classical molecular dynamic machines, and Ising model computers. Comprised of seven chapters, this volume begins by documenting the progress of the CalTech Concurrent Computation Program and its evolution from computational high-energy physics to a supercomputer initiative, with emphasis on the lessons learned including computer architecture issues and the trade-offs between in-house and commercial development. The reader is then introduced to the QCD Machine, a special-purpose parallel supercomputer that was designed and built to solve the lattice quantum chromodynamics problem. Subsequent chapters focus on the Geometry-Defining Processors and their application to the solution of partial differential equations; the Navier-Stokes computer; parallel processing using the Loosely Coupled Array of Processors (LCAP) system; and the Delft Ising system processor. The design and implementation of the Delft molecular-dynamics processor are also described. This book will be of interest to computer engineers and designers.
Book Synopsis Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics by : Xiakun Chu
Download or read book Advanced Sampling and Modeling in Molecular Simulations for Slow and Large-Scale Biomolecular Dynamics written by Xiakun Chu and published by Frontiers Media SA. This book was released on 2022-01-07 with total page 164 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Atomistic Modeling of Materials Failure by : Markus J. Buehler
Download or read book Atomistic Modeling of Materials Failure written by Markus J. Buehler and published by Springer Science & Business Media. This book was released on 2008-08-07 with total page 547 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is an introduction to molecular and atomistic modeling techniques applied to fracture and deformation of solids, focusing on a variety of brittle, ductile, geometrically confined and biological materials. The overview includes computational methods and techniques operating at the atomic scale, and describes how these techniques can be used to model cracks and other deformation mechanisms. The book aims to make new molecular modeling techniques available to a wider community.
Book Synopsis Large Scale Dynamics of Interacting Particles by : Herbert Spohn
Download or read book Large Scale Dynamics of Interacting Particles written by Herbert Spohn and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 346 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book deals with one of the fundamental problems of nonequilibrium statistical mechanics: the explanation of large-scale dynamics (evolution differential equations) from models of a very large number of interacting particles. This book addresses both researchers and students. Much of the material presented has never been published in book-form before.
Book Synopsis Understanding Molecular Simulation by : Daan Frenkel
Download or read book Understanding Molecular Simulation written by Daan Frenkel and published by Elsevier. This book was released on 2001-10-19 with total page 661 pages. Available in PDF, EPUB and Kindle. Book excerpt: Understanding Molecular Simulation: From Algorithms to Applications explains the physics behind the "recipes" of molecular simulation for materials science. Computer simulators are continuously confronted with questions concerning the choice of a particular technique for a given application. A wide variety of tools exist, so the choice of technique requires a good understanding of the basic principles. More importantly, such understanding may greatly improve the efficiency of a simulation program. The implementation of simulation methods is illustrated in pseudocodes and their practical use in the case studies used in the text. Since the first edition only five years ago, the simulation world has changed significantly -- current techniques have matured and new ones have appeared. This new edition deals with these new developments; in particular, there are sections on: - Transition path sampling and diffusive barrier crossing to simulaterare events - Dissipative particle dynamic as a course-grained simulation technique - Novel schemes to compute the long-ranged forces - Hamiltonian and non-Hamiltonian dynamics in the context constant-temperature and constant-pressure molecular dynamics simulations - Multiple-time step algorithms as an alternative for constraints - Defects in solids - The pruned-enriched Rosenbluth sampling, recoil-growth, and concerted rotations for complex molecules - Parallel tempering for glassy Hamiltonians Examples are included that highlight current applications and the codes of case studies are available on the World Wide Web. Several new examples have been added since the first edition to illustrate recent applications. Questions are included in this new edition. No prior knowledge of computer simulation is assumed.
Book Synopsis High Performance Computing - HiPC 2007 by : Srinivas Aluru
Download or read book High Performance Computing - HiPC 2007 written by Srinivas Aluru and published by Springer. This book was released on 2008-01-22 with total page 687 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 14th International Conference on High-Performance Computing, HiPC 2007, held in Goa, India, in December 2007. The 53 revised full papers presented together with the abstracts of five keynote talks were carefully reviewed and selected from 253 submissions. The papers are organized in topical sections on a broad range of applications including I/O and FPGAs, and microarchitecture and multiprocessor architecture.
Book Synopsis Clay-water Interface and Its Rheological Implications by : Necip Güven
Download or read book Clay-water Interface and Its Rheological Implications written by Necip Güven and published by . This book was released on 1992 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Large-Scale Disasters by : Mohamed Gad-el-Hak
Download or read book Large-Scale Disasters written by Mohamed Gad-el-Hak and published by Cambridge University Press. This book was released on 2008-06-23 with total page 569 pages. Available in PDF, EPUB and Kindle. Book excerpt: 'Extreme' events - including climatic events, such as hurricanes, tornadoes, drought - can cause massive disruption to society, including large death tolls and property damage in the billions of dollars. Events in recent years have shown the importance of being prepared and that countries need to work together to help alleviate the resulting pain and suffering. This volume presents an integrated review of the broad research field of large-scale disasters. It establishes a common framework for predicting, controlling and managing both manmade and natural disasters. There is a particular focus on events caused by weather and climate change. Other topics include air pollution, tsunamis, disaster modeling, the use of remote sensing and the logistics of disaster management. It will appeal to scientists, engineers, first responders and health-care professionals, in addition to graduate students and researchers who have an interest in the prediction, prevention or mitigation of large-scale disasters.
Book Synopsis Large Scale Computational Physics On Massively Parallel Computers by : Hans J Herrmann
Download or read book Large Scale Computational Physics On Massively Parallel Computers written by Hans J Herrmann and published by World Scientific. This book was released on 1993-12-27 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: Contents:A Lattice Solid Model for the Nonlinear Dynamics of Earthquakes (P Mora & D Place)Vectorized and Parallelized Algorithms for Multi-Million Particle MD-Simulations (W Form et al)Green-Function Method for Electronic Structure of Periodic Crystals (R Zeller)Parallelization of the Ising Simulation (N Ito)A Nonlocal Approach to Vertex Models and Quantum Spin Systems (H G Evertz & M Marcu)The Static Quark-Antiquark-Potential: A ‘Classical’ Experiment on the Connection Machine CM-2 (K Schilling & G S Bali)Determination of Monopole Current Clusters in Four-Dimensional Quantum Electrodynamics (A Bode et al)QCD Calculations on the QCDPAX (K Kanaya)UKQCD — Recent Results and Future Prospects (R Kenway)Programming Tools for Parallel Computers (K J M Moriarity & T Trappenberg)Workstation Clusters: One Way to Parallel Computing (M Weber)APE100 and Beyond (R Tripiccione)and other papers Readership: Computational physicists. keywords:
Book Synopsis Very Large Scale Computation in the 21st Century by : Jill P. Mesirov
Download or read book Very Large Scale Computation in the 21st Century written by Jill P. Mesirov and published by SIAM. This book was released on 1991-01-01 with total page 360 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text on very large scale computation in the 21st century covers such topics as: challenges in the natural sciences and physics; chemistry; fluid dynamics; astrophysics; biology; challenges in engineering; challenges in algorithm design; and challenges in system design.
Book Synopsis Supercomputing for Molecular Dynamics Simulations by : Alexander Heinecke
Download or read book Supercomputing for Molecular Dynamics Simulations written by Alexander Heinecke and published by Springer. This book was released on 2015-03-30 with total page 83 pages. Available in PDF, EPUB and Kindle. Book excerpt: This work presents modern implementations of relevant molecular dynamics algorithms using ls1 mardyn, a simulation program for engineering applications. The text focuses strictly on HPC-related aspects, covering implementation on HPC architectures, taking Intel Xeon and Intel Xeon Phi clusters as representatives of current platforms. The work describes distributed and shared-memory parallelization on these platforms, including load balancing, with a particular focus on the efficient implementation of the compute kernels. The text also discusses the software-architecture of the resulting code.
Book Synopsis Strongly Coupled Coulomb Systems by : Gabor J. Kalman
Download or read book Strongly Coupled Coulomb Systems written by Gabor J. Kalman and published by Springer Science & Business Media. This book was released on 2006-03-11 with total page 699 pages. Available in PDF, EPUB and Kindle. Book excerpt: The International Conference on Strongly Coupled Coulomb Systems was held on the campus of Boston College in Newton, Massachusetts, August 3–10, 1997. Although this conference was the first under a new name, it was the continuation of a series of international meetings on strongly coupled plasmas and other Coulomb systems that started with the NATO Summer Institute on Strongly Coupled Plasmas, almost exactly twenty years prior to this conference, in July of 1977 in Orleans la Source, France. Over the intervening period the field of strongly coupled plasmas has developed vigorously. In the 1977 meeting the emphasis was on computer (Monte Carlo and molecular dynamics) simulations which provided, for the first time, insight into the rich and new physics of strongly coupled fully ionizedplasmas. While theorists scrambled to provide a theoretical underpinning for these results, there was also a dearth of real experimental input to reinforce the computer simulations. Over the past few years this situation has changed drastically and a variety of direct experiments on classical, pure, strongly correlated plasma systems (charged particle traps, dusty plasmas, electrons on the surface of liquid helium, etc. ) have become available. Even more importantly, entire new area of experimental interest in condensed matter physics have opened up through developments in nano-technology and the fabrication of low-dimensional systems, where the physical behavior, in many ways, is similar to that in classical plasmas. Strongly coupled plasma physics has always been an interdisciplinaryactivity.
Book Synopsis Polymer Electrolyte Fuel Cells by : Michael Eikerling
Download or read book Polymer Electrolyte Fuel Cells written by Michael Eikerling and published by CRC Press. This book was released on 2014-09-23 with total page 567 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book provides a systematic and profound account of scientific challenges in fuel cell research. The introductory chapters bring readers up to date on the urgency and implications of the global energy challenge, the prospects of electrochemical energy conversion technologies, and the thermodynamic and electrochemical principles underlying the op
Book Synopsis Molecular Simulation and Industrial Applications by : Keith E. Gubbins
Download or read book Molecular Simulation and Industrial Applications written by Keith E. Gubbins and published by Taylor & Francis. This book was released on 1996 with total page 568 pages. Available in PDF, EPUB and Kindle. Book excerpt: First published in 2004. Routledge is an imprint of Taylor & Francis, an informa company.
