MCMC from Scratch

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Author :
Publisher : Springer Nature
ISBN 13 : 9811927154
Total Pages : 198 pages
Book Rating : 4.8/5 (119 download)

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Book Synopsis MCMC from Scratch by : Masanori Hanada

Download or read book MCMC from Scratch written by Masanori Hanada and published by Springer Nature. This book was released on 2022-10-20 with total page 198 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook explains the fundamentals of Markov Chain Monte Carlo (MCMC) without assuming advanced knowledge of mathematics and programming. MCMC is a powerful technique that can be used to integrate complicated functions or to handle complicated probability distributions. MCMC is frequently used in diverse fields where statistical methods are important – e.g. Bayesian statistics, quantum physics, machine learning, computer science, computational biology, and mathematical economics. This book aims to equip readers with a sound understanding of MCMC and enable them to write simulation codes by themselves. The content consists of six chapters. Following Chap. 2, which introduces readers to the Monte Carlo algorithm and highlights the advantages of MCMC, Chap. 3 presents the general aspects of MCMC. Chap. 4 illustrates the essence of MCMC through the simple example of the Metropolis algorithm. In turn, Chap. 5 explains the HMC algorithm, Gibbs sampling algorithm and Metropolis-Hastings algorithm, discussing their pros, cons and pitfalls. Lastly, Chap. 6 presents several applications of MCMC. Including a wealth of examples and exercises with solutions, as well as sample codes and further math topics in the Appendix, this book offers a valuable asset for students and beginners in various fields.

Markov Chain Monte Carlo

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Author :
Publisher : CRC Press
ISBN 13 : 9780412818202
Total Pages : 264 pages
Book Rating : 4.8/5 (182 download)

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Book Synopsis Markov Chain Monte Carlo by : Dani Gamerman

Download or read book Markov Chain Monte Carlo written by Dani Gamerman and published by CRC Press. This book was released on 1997-10-01 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bridging the gap between research and application, Markov Chain Monte Carlo: Stochastic Simulation for Bayesian Inference provides a concise, and integrated account of Markov chain Monte Carlo (MCMC) for performing Bayesian inference. This volume, which was developed from a short course taught by the author at a meeting of Brazilian statisticians and probabilists, retains the didactic character of the original course text. The self-contained text units make MCMC accessible to scientists in other disciplines as well as statisticians. It describes each component of the theory in detail and outlines related software, which is of particular benefit to applied scientists.

Markov Chain Monte Carlo in Practice

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Author :
Publisher : CRC Press
ISBN 13 : 1482214970
Total Pages : 505 pages
Book Rating : 4.4/5 (822 download)

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Book Synopsis Markov Chain Monte Carlo in Practice by : W.R. Gilks

Download or read book Markov Chain Monte Carlo in Practice written by W.R. Gilks and published by CRC Press. This book was released on 1995-12-01 with total page 505 pages. Available in PDF, EPUB and Kindle. Book excerpt: In a family study of breast cancer, epidemiologists in Southern California increase the power for detecting a gene-environment interaction. In Gambia, a study helps a vaccination program reduce the incidence of Hepatitis B carriage. Archaeologists in Austria place a Bronze Age site in its true temporal location on the calendar scale. And in France,

Bayes Rules!

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Publisher : CRC Press
ISBN 13 : 1000529568
Total Pages : 606 pages
Book Rating : 4.0/5 (5 download)

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Book Synopsis Bayes Rules! by : Alicia A. Johnson

Download or read book Bayes Rules! written by Alicia A. Johnson and published by CRC Press. This book was released on 2022-03-03 with total page 606 pages. Available in PDF, EPUB and Kindle. Book excerpt: Praise for Bayes Rules!: An Introduction to Applied Bayesian Modeling “A thoughtful and entertaining book, and a great way to get started with Bayesian analysis.” Andrew Gelman, Columbia University “The examples are modern, and even many frequentist intro books ignore important topics (like the great p-value debate) that the authors address. The focus on simulation for understanding is excellent.” Amy Herring, Duke University “I sincerely believe that a generation of students will cite this book as inspiration for their use of – and love for – Bayesian statistics. The narrative holds the reader’s attention and flows naturally – almost conversationally. Put simply, this is perhaps the most engaging introductory statistics textbook I have ever read. [It] is a natural choice for an introductory undergraduate course in applied Bayesian statistics." Yue Jiang, Duke University “This is by far the best book I’ve seen on how to (and how to teach students to) do Bayesian modeling and understand the underlying mathematics and computation. The authors build intuition and scaffold ideas expertly, using interesting real case studies, insightful graphics, and clear explanations. The scope of this book is vast – from basic building blocks to hierarchical modeling, but the authors’ thoughtful organization allows the reader to navigate this journey smoothly. And impressively, by the end of the book, one can run sophisticated Bayesian models and actually understand the whys, whats, and hows.” Paul Roback, St. Olaf College “The authors provide a compelling, integrated, accessible, and non-religious introduction to statistical modeling using a Bayesian approach. They outline a principled approach that features computational implementations and model assessment with ethical implications interwoven throughout. Students and instructors will find the conceptual and computational exercises to be fresh and engaging.” Nicholas Horton, Amherst College An engaging, sophisticated, and fun introduction to the field of Bayesian statistics, Bayes Rules!: An Introduction to Applied Bayesian Modeling brings the power of modern Bayesian thinking, modeling, and computing to a broad audience. In particular, the book is an ideal resource for advanced undergraduate statistics students and practitioners with comparable experience. Bayes Rules! empowers readers to weave Bayesian approaches into their everyday practice. Discussions and applications are data driven. A natural progression from fundamental to multivariable, hierarchical models emphasizes a practical and generalizable model building process. The evaluation of these Bayesian models reflects the fact that a data analysis does not exist in a vacuum. Features • Utilizes data-driven examples and exercises. • Emphasizes the iterative model building and evaluation process. • Surveys an interconnected range of multivariable regression and classification models. • Presents fundamental Markov chain Monte Carlo simulation. • Integrates R code, including RStan modeling tools and the bayesrules package. • Encourages readers to tap into their intuition and learn by doing. • Provides a friendly and inclusive introduction to technical Bayesian concepts. • Supports Bayesian applications with foundational Bayesian theory.

Introducing Monte Carlo Methods with R

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Author :
Publisher : Springer Science & Business Media
ISBN 13 : 1441915753
Total Pages : 297 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis Introducing Monte Carlo Methods with R by : Christian Robert

Download or read book Introducing Monte Carlo Methods with R written by Christian Robert and published by Springer Science & Business Media. This book was released on 2010 with total page 297 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers the main tools used in statistical simulation from a programmer’s point of view, explaining the R implementation of each simulation technique and providing the output for better understanding and comparison.

Monte Carlo Statistical Methods

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Publisher : Springer Science & Business Media
ISBN 13 : 1475741456
Total Pages : 670 pages
Book Rating : 4.4/5 (757 download)

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Book Synopsis Monte Carlo Statistical Methods by : Christian Robert

Download or read book Monte Carlo Statistical Methods written by Christian Robert and published by Springer Science & Business Media. This book was released on 2013-03-14 with total page 670 pages. Available in PDF, EPUB and Kindle. Book excerpt: We have sold 4300 copies worldwide of the first edition (1999). This new edition contains five completely new chapters covering new developments.

Bayesian Methods for Ecology

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Publisher : Cambridge University Press
ISBN 13 : 113946387X
Total Pages : 310 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Bayesian Methods for Ecology by : Michael A. McCarthy

Download or read book Bayesian Methods for Ecology written by Michael A. McCarthy and published by Cambridge University Press. This book was released on 2007-05-10 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: The interest in using Bayesian methods in ecology is increasing, however many ecologists have difficulty with conducting the required analyses. McCarthy bridges that gap, using a clear and accessible style. The text also incorporates case studies to demonstrate mark-recapture analysis, development of population models and the use of subjective judgement. The advantages of Bayesian methods, are also described here, for example, the incorporation of any relevant prior information and the ability to assess the evidence in favour of competing hypotheses. Free software is available as well as an accompanying web-site containing the data files and WinBUGS codes. Bayesian Methods for Ecology will appeal to academic researchers, upper undergraduate and graduate students of Ecology.

Statistical Rethinking

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Publisher : CRC Press
ISBN 13 : 1315362619
Total Pages : 488 pages
Book Rating : 4.3/5 (153 download)

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Book Synopsis Statistical Rethinking by : Richard McElreath

Download or read book Statistical Rethinking written by Richard McElreath and published by CRC Press. This book was released on 2018-01-03 with total page 488 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical Rethinking: A Bayesian Course with Examples in R and Stan builds readers’ knowledge of and confidence in statistical modeling. Reflecting the need for even minor programming in today’s model-based statistics, the book pushes readers to perform step-by-step calculations that are usually automated. This unique computational approach ensures that readers understand enough of the details to make reasonable choices and interpretations in their own modeling work. The text presents generalized linear multilevel models from a Bayesian perspective, relying on a simple logical interpretation of Bayesian probability and maximum entropy. It covers from the basics of regression to multilevel models. The author also discusses measurement error, missing data, and Gaussian process models for spatial and network autocorrelation. By using complete R code examples throughout, this book provides a practical foundation for performing statistical inference. Designed for both PhD students and seasoned professionals in the natural and social sciences, it prepares them for more advanced or specialized statistical modeling. Web Resource The book is accompanied by an R package (rethinking) that is available on the author’s website and GitHub. The two core functions (map and map2stan) of this package allow a variety of statistical models to be constructed from standard model formulas.

Bringing Bayesian Models to Life

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Publisher : CRC Press
ISBN 13 : 0429516800
Total Pages : 430 pages
Book Rating : 4.4/5 (295 download)

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Book Synopsis Bringing Bayesian Models to Life by : Mevin B. Hooten

Download or read book Bringing Bayesian Models to Life written by Mevin B. Hooten and published by CRC Press. This book was released on 2019-05-15 with total page 430 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bringing Bayesian Models to Life empowers the reader to extend, enhance, and implement statistical models for ecological and environmental data analysis. We open the black box and show the reader how to connect modern statistical models to computer algorithms. These algorithms allow the user to fit models that answer their scientific questions without needing to rely on automated Bayesian software. We show how to handcraft statistical models that are useful in ecological and environmental science including: linear and generalized linear models, spatial and time series models, occupancy and capture-recapture models, animal movement models, spatio-temporal models, and integrated population-models. Features: R code implementing algorithms to fit Bayesian models using real and simulated data examples. A comprehensive review of statistical models commonly used in ecological and environmental science. Overview of Bayesian computational methods such as importance sampling, MCMC, and HMC. Derivations of the necessary components to construct statistical algorithms from scratch. Bringing Bayesian Models to Life contains a comprehensive treatment of models and associated algorithms for fitting the models to data. We provide detailed and annotated R code in each chapter and apply it to fit each model we present to either real or simulated data for instructional purposes. Our code shows how to create every result and figure in the book so that readers can use and modify it for their own analyses. We provide all code and data in an organized set of directories available at the authors' websites.

Statistical Thinking from Scratch

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Author :
Publisher :
ISBN 13 : 0198827628
Total Pages : 318 pages
Book Rating : 4.1/5 (988 download)

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Book Synopsis Statistical Thinking from Scratch by : M. D. Edge

Download or read book Statistical Thinking from Scratch written by M. D. Edge and published by . This book was released on 2019 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: Focuses on detailed instruction in a single statistical technique, simple linear regression (SLR), with the goal of gaining tools, understanding, and intuition that can be applied to other contexts.

Foundations of Data Science

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Publisher : Cambridge University Press
ISBN 13 : 1108617360
Total Pages : 433 pages
Book Rating : 4.1/5 (86 download)

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Book Synopsis Foundations of Data Science by : Avrim Blum

Download or read book Foundations of Data Science written by Avrim Blum and published by Cambridge University Press. This book was released on 2020-01-23 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an introduction to the mathematical and algorithmic foundations of data science, including machine learning, high-dimensional geometry, and analysis of large networks. Topics include the counterintuitive nature of data in high dimensions, important linear algebraic techniques such as singular value decomposition, the theory of random walks and Markov chains, the fundamentals of and important algorithms for machine learning, algorithms and analysis for clustering, probabilistic models for large networks, representation learning including topic modelling and non-negative matrix factorization, wavelets and compressed sensing. Important probabilistic techniques are developed including the law of large numbers, tail inequalities, analysis of random projections, generalization guarantees in machine learning, and moment methods for analysis of phase transitions in large random graphs. Additionally, important structural and complexity measures are discussed such as matrix norms and VC-dimension. This book is suitable for both undergraduate and graduate courses in the design and analysis of algorithms for data.

A Course in Cosmology

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Publisher : Cambridge University Press
ISBN 13 : 1009082248
Total Pages : 450 pages
Book Rating : 4.0/5 (9 download)

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Book Synopsis A Course in Cosmology by : Dragan Huterer

Download or read book A Course in Cosmology written by Dragan Huterer and published by Cambridge University Press. This book was released on 2023-02-28 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new graduate textbook adopts a pedagogical approach to contemporary cosmology that enables readers to build an intuitive understanding of theory and data, and of how they interact, which is where the greatest advances in the field are currently being made. Using analogies, intuitive explanations of complex topics, worked examples and computational problems, the book begins with the physics of the early universe, and goes on to cover key concepts such as inflation, dark matter and dark energy, large‐scale structure, and cosmic microwave background. Computational and data analysis techniques, and statistics, are integrated throughout the text, particularly in the chapters on late-universe cosmology, while another chapter is entirely devoted to the basics of statistical methods. A solutions manual for end-of-chapter problems is available to instructors, and suggested syllabi, based on different course lengths and emphasis, can be found in the Preface. Online computer code and datasets enhance the student learning experience.

Computer Vision

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Publisher : Springer Nature
ISBN 13 : 3030965309
Total Pages : 365 pages
Book Rating : 4.0/5 (39 download)

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Book Synopsis Computer Vision by : Song-Chun Zhu

Download or read book Computer Vision written by Song-Chun Zhu and published by Springer Nature. This book was released on 2023-03-15 with total page 365 pages. Available in PDF, EPUB and Kindle. Book excerpt: As the first book of a three-part series, this book is offered as a tribute to pioneers in vision, such as Béla Julesz, David Marr, King-Sun Fu, Ulf Grenander, and David Mumford. The authors hope to provide foundation and, perhaps more importantly, further inspiration for continued research in vision. This book covers David Marr's paradigm and various underlying statistical models for vision. The mathematical framework herein integrates three regimes of models (low-, mid-, and high-entropy regimes) and provides foundation for research in visual coding, recognition, and cognition. Concepts are first explained for understanding and then supported by findings in psychology and neuroscience, after which they are established by statistical models and associated learning and inference algorithms. A reader will gain a unified, cross-disciplinary view of research in vision and will accrue knowledge spanning from psychology to neuroscience to statistics.

The Art of Randomness

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Publisher : No Starch Press
ISBN 13 : 1718503253
Total Pages : 402 pages
Book Rating : 4.7/5 (185 download)

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Book Synopsis The Art of Randomness by : Ronald T. Kneusel

Download or read book The Art of Randomness written by Ronald T. Kneusel and published by No Starch Press. This book was released on 2024-03-05 with total page 402 pages. Available in PDF, EPUB and Kindle. Book excerpt: Harness the power of randomness (and Python code) to solve real-world problems in fun, hands-on experiments—from simulating evolution to encrypting messages to making machine-learning algorithms! The Art of Randomness is a hands-on guide to mastering the many ways you can use randomized algorithms to solve real programming and scientific problems. You’ll learn how to use randomness to run simulations, hide information, design experiments, and even create art and music. All you need is some Python, basic high school math, and a roll of the dice. Author Ronald T. Kneusel focuses on helping you build your intuition so that you’ll know when and how to use random processes to get things done. You’ll develop a randomness engine (a Python class that supplies random values from your chosen source), then explore how to leverage randomness to: Simulate Darwinian evolution and optimize with swarm-based search algorithms Design scientific experiments to produce more meaningful results by making them truly random Implement machine learning algorithms like neural networks and random forests Use Markov Chain Monte Carlo methods to sample from complex distributions Hide information in audio files and images, generate art, and create music Reconstruct original signals and images from only randomly sampled data Scientific anecdotes and code examples throughout illustrate how randomness plays into areas like optimization, machine learning, and audio signals. End-of-chapter exercises encourage further exploration. Whether you’re a programmer, scientist, engineer, mathematician, or artist, you’ll find The Art of Randomness to be your ticket to discovering the hidden power of applied randomness and the ways it can transform your approach to solving problems, from the technical to the artistic.

Bayesian Modeling and Computation in Python

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Author :
Publisher : CRC Press
ISBN 13 : 1000520048
Total Pages : 420 pages
Book Rating : 4.0/5 (5 download)

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Book Synopsis Bayesian Modeling and Computation in Python by : Osvaldo A. Martin

Download or read book Bayesian Modeling and Computation in Python written by Osvaldo A. Martin and published by CRC Press. This book was released on 2021-12-28 with total page 420 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bayesian Modeling and Computation in Python aims to help beginner Bayesian practitioners to become intermediate modelers. It uses a hands on approach with PyMC3, Tensorflow Probability, ArviZ and other libraries focusing on the practice of applied statistics with references to the underlying mathematical theory. The book starts with a refresher of the Bayesian Inference concepts. The second chapter introduces modern methods for Exploratory Analysis of Bayesian Models. With an understanding of these two fundamentals the subsequent chapters talk through various models including linear regressions, splines, time series, Bayesian additive regression trees. The final chapters include Approximate Bayesian Computation, end to end case studies showing how to apply Bayesian modelling in different settings, and a chapter about the internals of probabilistic programming languages. Finally the last chapter serves as a reference for the rest of the book by getting closer into mathematical aspects or by extending the discussion of certain topics. This book is written by contributors of PyMC3, ArviZ, Bambi, and Tensorflow Probability among other libraries.

Doing Bayesian Data Analysis

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Publisher : Academic Press
ISBN 13 : 0123814863
Total Pages : 673 pages
Book Rating : 4.1/5 (238 download)

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Book Synopsis Doing Bayesian Data Analysis by : John Kruschke

Download or read book Doing Bayesian Data Analysis written by John Kruschke and published by Academic Press. This book was released on 2010-11-25 with total page 673 pages. Available in PDF, EPUB and Kindle. Book excerpt: There is an explosion of interest in Bayesian statistics, primarily because recently created computational methods have finally made Bayesian analysis tractable and accessible to a wide audience. Doing Bayesian Data Analysis, A Tutorial Introduction with R and BUGS, is for first year graduate students or advanced undergraduates and provides an accessible approach, as all mathematics is explained intuitively and with concrete examples. It assumes only algebra and 'rusty' calculus. Unlike other textbooks, this book begins with the basics, including essential concepts of probability and random sampling. The book gradually climbs all the way to advanced hierarchical modeling methods for realistic data. The text provides complete examples with the R programming language and BUGS software (both freeware), and begins with basic programming examples, working up gradually to complete programs for complex analyses and presentation graphics. These templates can be easily adapted for a large variety of students and their own research needs.The textbook bridges the students from their undergraduate training into modern Bayesian methods. - Accessible, including the basics of essential concepts of probability and random sampling - Examples with R programming language and BUGS software - Comprehensive coverage of all scenarios addressed by non-bayesian textbooks- t-tests, analysis of variance (ANOVA) and comparisons in ANOVA, multiple regression, and chi-square (contingency table analysis). - Coverage of experiment planning - R and BUGS computer programming code on website - Exercises have explicit purposes and guidelines for accomplishment

Probability and Bayesian Modeling

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Author :
Publisher : CRC Press
ISBN 13 : 1351030132
Total Pages : 553 pages
Book Rating : 4.3/5 (51 download)

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Book Synopsis Probability and Bayesian Modeling by : Jim Albert

Download or read book Probability and Bayesian Modeling written by Jim Albert and published by CRC Press. This book was released on 2019-12-06 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: Probability and Bayesian Modeling is an introduction to probability and Bayesian thinking for undergraduate students with a calculus background. The first part of the book provides a broad view of probability including foundations, conditional probability, discrete and continuous distributions, and joint distributions. Statistical inference is presented completely from a Bayesian perspective. The text introduces inference and prediction for a single proportion and a single mean from Normal sampling. After fundamentals of Markov Chain Monte Carlo algorithms are introduced, Bayesian inference is described for hierarchical and regression models including logistic regression. The book presents several case studies motivated by some historical Bayesian studies and the authors’ research. This text reflects modern Bayesian statistical practice. Simulation is introduced in all the probability chapters and extensively used in the Bayesian material to simulate from the posterior and predictive distributions. One chapter describes the basic tenets of Metropolis and Gibbs sampling algorithms; however several chapters introduce the fundamentals of Bayesian inference for conjugate priors to deepen understanding. Strategies for constructing prior distributions are described in situations when one has substantial prior information and for cases where one has weak prior knowledge. One chapter introduces hierarchical Bayesian modeling as a practical way of combining data from different groups. There is an extensive discussion of Bayesian regression models including the construction of informative priors, inference about functions of the parameters of interest, prediction, and model selection. The text uses JAGS (Just Another Gibbs Sampler) as a general-purpose computational method for simulating from posterior distributions for a variety of Bayesian models. An R package ProbBayes is available containing all of the book datasets and special functions for illustrating concepts from the book. A complete solutions manual is available for instructors who adopt the book in the Additional Resources section.