Marine Microbiomes Towards Standard Methods And Best Practices

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Marine Microbiomes: Towards Standard Methods and Best Practices

Author : Stéphane Pesant
Publisher : Frontiers Media SA
ISBN 13 : 2832541313
Total Pages : 125 pages
Book Rating : 4.8/5 (325 download)

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Book Synopsis Marine Microbiomes: Towards Standard Methods and Best Practices by : Stéphane Pesant

Download or read book Marine Microbiomes: Towards Standard Methods and Best Practices written by Stéphane Pesant and published by Frontiers Media SA. This book was released on 2023-12-14 with total page 125 pages. Available in PDF, EPUB and Kindle. Book excerpt: A decade of technological advances and research on the human microbiome has re-defined our understanding of biological systems, and now offers diagnostic tools and new approaches to human health. Likewise, marine ecosystems are driven by their microbiome, the ensemble of microscopic organisms that inhabit the water column, sediments and aquatic organisms, and regulate most fluxes of energy and matter. While the human microbiome is composed principally of bacteria, the marine microbiome has a much broader ensemble of microscopic organisms with sizes spanning from viruses of a few tens of nanometres to metazoans of several centimetres. Advances in high throughput imaging and sequencing are emerging in aquatic science, providing important insights into ecosystem structure and functions, and contributing to develop new indicators of ecosystem health and potential hazards to living resources and humans. A number of research exploration and monitoring programs such as the Tara Oceans global expedition and the Marine Biological Observing Network (MBON), and the rising popularity of environmental DNA (eDNA) already led to a wealth of data. However, the wide range of methodologies used in this early exploration phase poses a challenge to integrative studies, prompting community responses such as the Genomic Standards Consortium. This Research Topic will foster cross-community exchange of standards and best practices. It is an opportunity for the different communities working on marine microbiomes to discuss the advantages and the limitations of their sampling and analysis methods. The collection of papers will constitute a knowledge base aimed at (1) addressing the integration of existing observations from heterogenous methods and data types, and (2) working towards cross-communities standards and best practices for future observations and experiments. This Research Topic will publish comprehensive methodological papers that review a sufficiently large body of field or experimental work. Supporting (meta)data, such as environmental context, sampling materials, sample treatments, extraction and imaging yields, must be provided and should preferably be uploaded to an online sample registry such as BioSamples. Protocols and analytical methods should preferably be uploaded to an online repository such as Protocols.io. We welcome contributions from communities working in different environments: · focus on marine systems, but also interested in estuarine and freshwater systems · coastal, open ocean and deep-sea regions · benthic, pelagic and aerosol environments We strongly encourage contributions from communities involved in: · networks of local observatories and long-term monitoring programs · regional & basin-scale surveys, and global expeditions · biodiscovery linked to economic sectors such as pharmaceutics and bioengineering · environmental and health assessments linked to economic sectors such as aquaculture, fisheries, seabed mining, wind-farms, and oil and gas

Marine Microbiome and Biogeochemical Cycles in Marine Productive Areas

Author : Alejandro A. Murillo
Publisher : Frontiers Media SA
ISBN 13 : 2889632768
Total Pages : 179 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Marine Microbiome and Biogeochemical Cycles in Marine Productive Areas by : Alejandro A. Murillo

Download or read book Marine Microbiome and Biogeochemical Cycles in Marine Productive Areas written by Alejandro A. Murillo and published by Frontiers Media SA. This book was released on 2020-01-16 with total page 179 pages. Available in PDF, EPUB and Kindle. Book excerpt:

The Marine Microbiome

Author : Lucas J. Stal
Publisher : Springer
ISBN 13 : 3319330004
Total Pages : 501 pages
Book Rating : 4.3/5 (193 download)

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Book Synopsis The Marine Microbiome by : Lucas J. Stal

Download or read book The Marine Microbiome written by Lucas J. Stal and published by Springer. This book was released on 2016-06-03 with total page 501 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the state-of-the-art concerning the ‘marine microbiome’ and its uses in biotechnology. The first part discusses the diversity and ecology of marine microorganisms and viruses, including all three domains of life: Bacteria, Archaea, and Eukarya. It discusses whether marine microorganisms exist and, if so, why they might be unique. The second part presents selected marine habitats, their inhabitants and how they influence biogeochemical cycles, while the third discusses the utilization of marine microbial resources, including legal aspects, dissemination, and public awareness. The marine microbiome is the total of microorganisms and viruses in the ocean and seas and in any connected environment, including the seafloor and marine animals and plants. The diversity of microbial life remains unquantified and largely unknown, and could represent a hidden treasure for human society. Accordingly, this book is also intended to connect academics and industry, providing essential information for microbiologists from both fields.

Variations in Marine Microbiomes

Author : Lei Ma
Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (137 download)

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Book Synopsis Variations in Marine Microbiomes by : Lei Ma

Download or read book Variations in Marine Microbiomes written by Lei Ma and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microorganisms are the dominant life form on Earth and inextricably tied to the ecology and evolution of all multicellular life, including marine animals. As the importance of microorganisms to our conception of life gains prominence, animals (and other macroorganisms) are increasingly viewed as “holobionts”, an assemblage of the host plus all its symbiotic microbes. This dissertation examines holobiont biology from the perspective of the microbial communities that live in and around marine hosts. Using both amplicon and metagenomic sequencing, I study the microbiomes of reef-associated seawater and Atlantic killifish to better understand habitat and host effects on microbiome structure. In two Caribbean reef systems, I used examined the biogeography of reef water microbes. I found that the microbiome of reef seawater varies with reef system and individual reefs but that microbiomes within individual reefs were similar to each other and did not vary with benthic composition. The regionalism of reef seawater microbiomes was further assessed upon incorporation of global scale data from five additional studies, which revealed that microbial communities were more distinct with increasing geographic distance. These results contribute to our understanding of the coral holobiont’s microbial environment and can inform monitoring efforts for reef health. Atlantic killifish populations can be categorized as sensitive or tolerant to industrial pollutants based on history of pollutant exposure. Thus, they are an excellent “natural laboratory” for understanding the combined effect of environment and host on microbiome composition. I examined the gut microbiomes of two populations of wild fish as well as captive fish originating from each of these wild populations. I found that living in and adapting to polluted waters can impact microbiome composition and structure, resulting in a microbiome that appears more disordered. Additionally, captivity resulted in a complete turnover of dominant microbial taxa, indicating the environment plays a large role in shaping killifish gut microbiomes. This dissertation demonstrates that diverse systems, from coral reefs to killifish, can benefit from a better understanding of its associated microorganisms. For holobiont studies, these results highlight the importance of considering the context of microbial communities, from environment to host population.

Handbook of Methods in Aquatic Microbial Ecology

Author : Paul F. Kemp
Publisher : CRC Press
ISBN 13 : 9780873715645
Total Pages : 1330 pages
Book Rating : 4.7/5 (156 download)

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Book Synopsis Handbook of Methods in Aquatic Microbial Ecology by : Paul F. Kemp

Download or read book Handbook of Methods in Aquatic Microbial Ecology written by Paul F. Kemp and published by CRC Press. This book was released on 1993-06-28 with total page 1330 pages. Available in PDF, EPUB and Kindle. Book excerpt: Handbook of Methods in Aquatic Microbial Ecology is the first comprehensive compilation of 85 fundamental methods in modern aquatic microbial ecology. Each method is presented in a detailed, step-by-step format that allows readers to adopt new methods with little difficulty. The methods represent the state of the art, and many have become standard procedures in microbial research and environmental assessment. The book also presents practical advice on how to apply the methods. It will be an indispensable reference for marine and freshwater research laboratories, environmental assessment laboratories, and industrial research labs concerned with microbial measurements in water.

Plastic Pollution In The Global Ocean

Author : Alice A Horton
Publisher : World Scientific
ISBN 13 : 9811259127
Total Pages : 410 pages
Book Rating : 4.8/5 (112 download)

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Book Synopsis Plastic Pollution In The Global Ocean by : Alice A Horton

Download or read book Plastic Pollution In The Global Ocean written by Alice A Horton and published by World Scientific. This book was released on 2022-12-27 with total page 410 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plastic pollution is a growing environmental problem that is attracting increasing interest across society, from academics to the general public. A significant factor in the wide public interest in plastics is its visibility; present throughout urban and rural environments, washing up on beaches and even visible from space. However, 'invisible' microplastics and nanoplastics are also an issue. With growing plastic production and usage, plastic waste within the environment will continue to increase. This increased input along with its persistence leads to accumulation and increasing ecosystem exposure, with as-yet unknown consequences.This book brings together a collection of chapters written by world-leading experts in environmental plastic pollution inputs, fate, effects and solutions. It provides an accessible overview of the current scientific understanding, future implications and key considerations for the management and mitigation of plastic waste within the global ocean.Related Link(s)

The Marine Microbiome

Author : Lucas J. Stal
Publisher : Springer
ISBN 13 : 9783030903824
Total Pages : 766 pages
Book Rating : 4.9/5 (38 download)

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Book Synopsis The Marine Microbiome by : Lucas J. Stal

Download or read book The Marine Microbiome written by Lucas J. Stal and published by Springer. This book was released on 2022-03-19 with total page 766 pages. Available in PDF, EPUB and Kindle. Book excerpt: This updated and expanded second edition reviews numerous aspects of the marine microbiome and its possible industrial applications. The marine microbiome is the total of microorganisms and viruses in the ocean and seas and in any connected environment, including the seafloor and marine animals and plants. In the first part of the book, diversity, origin and evolution of the marine microorganisms and viruses are discussed. The microbes presented originate from all three domains of life: Bacteria, Archaea, and Eukarya. The second part sheds some light on the different communities: it describes marine habitats and how their inhabitants control biogeochemical cycles. The third part finally examines the microbial ocean as a global system and evaluates methods of utilizing marine microbial resources. Adopting a translational approach, the book connects academic research with industrial applications, making it a fascinating read and valuable resource for microbiologists from both domains.

Microbial Ecology in Reservoirs and Lakes

Author : Haihan Zhang
Publisher : Frontiers Media SA
ISBN 13 : 2889639436
Total Pages : 310 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Microbial Ecology in Reservoirs and Lakes by : Haihan Zhang

Download or read book Microbial Ecology in Reservoirs and Lakes written by Haihan Zhang and published by Frontiers Media SA. This book was released on 2020-08-14 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Oceanobs'19: An Ocean of Opportunity. Volume II

Author : Tong Lee
Publisher : Frontiers Media SA
ISBN 13 : 2889631192
Total Pages : 629 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Oceanobs'19: An Ocean of Opportunity. Volume II by : Tong Lee

Download or read book Oceanobs'19: An Ocean of Opportunity. Volume II written by Tong Lee and published by Frontiers Media SA. This book was released on 2020-12-31 with total page 629 pages. Available in PDF, EPUB and Kindle. Book excerpt: This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.

Methods in Aquatic Microbiology

Author : Tony Gutierrez
Publisher : Frontiers Media SA
ISBN 13 : 2832534724
Total Pages : 150 pages
Book Rating : 4.8/5 (325 download)

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Book Synopsis Methods in Aquatic Microbiology by : Tony Gutierrez

Download or read book Methods in Aquatic Microbiology written by Tony Gutierrez and published by Frontiers Media SA. This book was released on 2023-12-11 with total page 150 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Marine Pollution – Monitoring, Management and Mitigation

Author : Amanda Reichelt-Brushett
Publisher : Springer Nature
ISBN 13 : 3031101278
Total Pages : 373 pages
Book Rating : 4.0/5 (311 download)

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Book Synopsis Marine Pollution – Monitoring, Management and Mitigation by : Amanda Reichelt-Brushett

Download or read book Marine Pollution – Monitoring, Management and Mitigation written by Amanda Reichelt-Brushett and published by Springer Nature. This book was released on 2023-05-11 with total page 373 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of marine environments inevitably involves considering the problem of marine pollution, which includes questions that focus on the essential need to ensure the long-term health of these exceptional ecosystems and the lives and livelihoods they support. The open access textbook "Marine Pollution: monitoring, management and mitigation" approaches these questions in a practical and highly readable format. It gives newcomers to the field background and perspective through the first comprehensive, multidisciplinary exploration of the topic. The topic is indeed complex, requiring the integration of the natural sciences and chemistry with management, policymakers, industry and all of us who are users of the marine environment. The textbook was written by leading experts to especially prepare graduates for a career in marine pollution studies. At the same time, it is relevant for anyone invested in the marine environment with a will to reduce their impacts. The chapters can easily be used independently and are also connected through the cross-referencing of related content. The introductory chapter provides a historical account of marine pollution and explores the fundamental physicochemical conditions of seawater. Two full chapters cover the requisite resources for ensuring success in field and laboratory studies. Then, chapter by chapter the book dives into to the various types of marine pollutants. In closing, it discusses the challenges of understanding multiple stressors and presents mitigation and restoration practices, along with a global overview of marine pollution legislation. We envisioned this textbook as being open access for the very reason we created it: this topic calls for global contributions and champions, and financial restraints should not limit access to this knowledge.

The Science and Applications of Microbial Genomics

Author : Institute of Medicine
Publisher : National Academies Press
ISBN 13 : 0309268192
Total Pages : 429 pages
Book Rating : 4.3/5 (92 download)

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Book Synopsis The Science and Applications of Microbial Genomics by : Institute of Medicine

Download or read book The Science and Applications of Microbial Genomics written by Institute of Medicine and published by National Academies Press. This book was released on 2013-05-02 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the past several decades, new scientific tools and approaches for detecting microbial species have dramatically enhanced our appreciation of the diversity and abundance of the microbiota and its dynamic interactions with the environments within which these microorganisms reside. The first bacterial genome was sequenced in 1995 and took more than 13 months of work to complete. Today, a microorganism's entire genome can be sequenced in a few days. Much as our view of the cosmos was forever altered in the 17th century with the invention of the telescope, these genomic technologies, and the observations derived from them, have fundamentally transformed our appreciation of the microbial world around us. On June 12 and 13, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats convened a public workshop in Washington, DC, to discuss the scientific tools and approaches being used for detecting and characterizing microbial species, and the roles of microbial genomics and metagenomics to better understand the culturable and unculturable microbial world around us. Through invited presentations and discussions, participants examined the use of microbial genomics to explore the diversity, evolution, and adaptation of microorganisms in a wide variety of environments; the molecular mechanisms of disease emergence and epidemiology; and the ways that genomic technologies are being applied to disease outbreak trace back and microbial surveillance. Points that were emphasized by many participants included the need to develop robust standardized sampling protocols, the importance of having the appropriate metadata, data analysis and data management challenges, and information sharing in real time. The Science and Applications of Microbial Genomics summarizes this workshop.

Microbiome Analysis

Author : Robert G. Beiko
Publisher :
ISBN 13 : 9781493987283
Total Pages : 324 pages
Book Rating : 4.9/5 (872 download)

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Book Synopsis Microbiome Analysis by : Robert G. Beiko

Download or read book Microbiome Analysis written by Robert G. Beiko and published by . This book was released on 2018 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Assuring Data Quality at U.S. Geological Survey Laboratories

Author : National Academies of Sciences, Engineering, and Medicine
Publisher : National Academies Press
ISBN 13 : 0309495628
Total Pages : 89 pages
Book Rating : 4.3/5 (94 download)

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Book Synopsis Assuring Data Quality at U.S. Geological Survey Laboratories by : National Academies of Sciences, Engineering, and Medicine

Download or read book Assuring Data Quality at U.S. Geological Survey Laboratories written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2020-01-23 with total page 89 pages. Available in PDF, EPUB and Kindle. Book excerpt: The U.S. Geological Survey (USGS) mission is to provide reliable and impartial scientific information to understand Earth, minimize loss of life and property from natural disasters, and manage water, biological, energy, and mineral resources. Data collection, analysis, interpretation, and dissemination are central to everything the USGS does. Among other activities, the USGS operates some 250 laboratories across the country to analyze physical and biological samples, including water, sediment, rock, plants, invertebrates, fish, and wildlife. The data generated in the laboratories help answer pressing scientific and societal questions or support regulation, resource management, or commercial applications. At the request of the USGS, this study reviews a representative sample of USGS laboratories to examine quality management systems and other approaches for assuring the quality of laboratory results and recommends best practices and procedures for USGS laboratories.

Microbiomes of Soils, Plants and Animals

Author : Rachael E. Antwis
Publisher :
ISBN 13 : 9781108654418
Total Pages : pages
Book Rating : 4.6/5 (544 download)

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Book Synopsis Microbiomes of Soils, Plants and Animals by : Rachael E. Antwis

Download or read book Microbiomes of Soils, Plants and Animals written by Rachael E. Antwis and published by . This book was released on 2020 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: A comparative, holistic synthesis of microbiome research, spanning soil, plant, animal and human hosts.

Microbiome and Machine Learning

Author : Isabel Moreno Indias
Publisher : Frontiers Media SA
ISBN 13 : 2889766780
Total Pages : 133 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis Microbiome and Machine Learning by : Isabel Moreno Indias

Download or read book Microbiome and Machine Learning written by Isabel Moreno Indias and published by Frontiers Media SA. This book was released on 2022-08-02 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Functional Metagenomics: Tools and Applications

Author : Trevor C. Charles
Publisher : Springer
ISBN 13 : 3319615106
Total Pages : 256 pages
Book Rating : 4.3/5 (196 download)

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Book Synopsis Functional Metagenomics: Tools and Applications by : Trevor C. Charles

Download or read book Functional Metagenomics: Tools and Applications written by Trevor C. Charles and published by Springer. This book was released on 2017-10-09 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this book, the latest tools available for functional metagenomics research are described.This research enables scientists to directly access the genomes from diverse microbial genomes at one time and study these “metagenomes”. Using the modern tools of genome sequencing and cloning, researchers have now been able to harness this astounding metagenomic diversity to understand and exploit the diverse functions of microorganisms. Leading scientists from around the world demonstrate how these approaches have been applied in many different settings, including aquatic and terrestrial habitats, microbiomes, and many more environments. This is a highly informative and carefully presented book, providing microbiologists with a summary of the latest functional metagenomics literature on all specific habitats.