Local Solvent Environment Can Define Solute Chemical Identity, Dynamics, and Reactivity

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ISBN 13 :
Total Pages : 191 pages
Book Rating : 4.:/5 (116 download)

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Book Synopsis Local Solvent Environment Can Define Solute Chemical Identity, Dynamics, and Reactivity by : Devon Rose Widmer

Download or read book Local Solvent Environment Can Define Solute Chemical Identity, Dynamics, and Reactivity written by Devon Rose Widmer and published by . This book was released on 2020 with total page 191 pages. Available in PDF, EPUB and Kindle. Book excerpt: Is it acceptable to assume that when a molecule is placed in solution, it retains the chemical identity and general behavior of its gas-phase counterpart? In this thesis, I explore this question through mixed quantum classical (MQC) molecular dynamics (MD) simulations of sodium dimer (Na2) and sodium dimer cation (Na2+) in liquid tetrahydrofuran (THF). Although most chemical reactions, particularly those relevant to biological systems, take place in the condensed phase, the solvent is generally thought of as a mere medium that holds the reactants and allows them to encounter each other via diffusion. Of course, there are scenarios where the solvent is known to influence the chemistry of the solute, but these cases are usually straightforward and are only thought about for a small subset of chemical reactions. However, no studies have yet described the local solvent environment as part of the chemical identity of the solute. In this thesis, I show that when there are even modest local specific interactions between a solute and solvent, the solvent controls the chemical identity of the solute, entirely changing the types of chemistry that can take place. In the specific case of an Na2 or Na2+ solute in liquid THF, I show that local solvent molecules actually integrate as part of the the solute's identity, thus, stabilizing the solute in multiple states that differ only in the number of solvent molecules associated with the solute's identity. These stable states, which can interconvert only by surmounting a large free energy barrier, behave as chemical species distinct not only from their gas-phase counterpart but also from each other. In addition, solvent interactions can also affect the dynamics of chemical reactions, such as photodissociation. Because the lowest energy excited state of gas-phase Na2+ is dissociative, this molecule makes an ideal basis for studies of photodissociation in the condensed phase, an important probe for understanding complex reaction dynamics. In this thesis, I show that when Na2+is photoexcited in liquid THF, the initial shape of the bonding electron is completely different than that of excited state Na2+ in the gas phase. This means that unlike its gas-phase counterpart, upon photoexcitation, the bond of Na2+ solvated in liquid THF does not immediately break. Instead, the electron must dynamically rotate into an orientation more favorable for dissociation. To investigate the dynamics of this process, I first pose a question fundamental to theoretical studies of the condensed phase: can a nonequilibrium system be understood through observation of the fluctuations of its equilibrium dynamics? This approximation, known as linear response (LR), is commonly assumed for condensed phase systems, but in this thesis I show that LR breaks down for the photodissociation of Na2+ in THF precisely because the local solvent environment experienced by the molecule varies between the equilibrium and nonequilibrium dynamics. In particular, I show that the solvent molecules associated with the solute's identity must shift from their preferred ground state positions to facilitate the rotation of the solute bonding electron into the position favorable for dissociation. Furthermore, in THF, the chemical identity of the solute can change during dissociation via the integration of new THF molecule's into the solute's identity. These processes consume most of the solute's dissociation energy, thus hindering its ability to fully dissociate. Thus, one cannot simply assume that a solute's chemical identity is retained in solution. In fact, when there are even modest solute--solvent interactions present, the local solvent environment actually controls the solute's chemical identity, and thus also its dynamics and reactivity.

Nonequilibrium Energy Surfaces and Discrete Solvent Environments in Solution-phase Chemical Bond Breaking

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (134 download)

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Book Synopsis Nonequilibrium Energy Surfaces and Discrete Solvent Environments in Solution-phase Chemical Bond Breaking by : Andy Vong

Download or read book Nonequilibrium Energy Surfaces and Discrete Solvent Environments in Solution-phase Chemical Bond Breaking written by Andy Vong and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Solvent dynamics are varied, complex, and can even change during the course of a chemical reaction. At the same time, they can be important for understanding the physics of solution-phase chemistry, thus requiring a framework for which to think about solvent effects. On one side, energy surfaces capture the average behavior of the reaction dynamics, but it is not clear how energy surfaces for solution-phase reactions ought to be constructed. On the other side, response functions capture the solvent fluctuations and provide information on how the solvent responds to changes of reacting solutes. This thesis explores the nature of solvent dynamics during the course of a bond-breaking reaction using the simulated photodissociation dynamics of Na$_2^+$ in liquid Ar and tetrahydrofuran (THF). Following the introduction, Chapter 2, reprinted with permission from Andy Vong, Devon R. Widmer, and Benjamin J. Schwartz ``Nonequilibrium Solvent Effects During Photodissociation in Liquids: Dynamical Energy Surfaces, Caging and Chemical Identity" \textit{J. Phys. Chem. Lett.} \textbf{2020}, \textit{11}, 9230--9238, identifies key photodissociation dynamics in Ar and THF and how energy surfaces for solution-phase reactions may be constructed. The potential energy surfaces of solution-phase reactions are generally inherited from gas-phase potentials or calculated by assuming that the solvent is in equilibrium with the solute, commonly referred to as the potential of mean force. For photodissociation reactions, which are molecularly ``violent", it is unlikely for the solvent to remain at equilibrium with the dissociating solute. Alternatively, a time-integral of work expression can directly capture the nonequilibrium dynamics to create a dynamical, nonequilibrium energy surface. For Na$_2^+$ in liquid Ar, the dynamical energy surface shows clear signatures of solvent caging, and the degree of caging is directly related to the mass of the solvent atoms. For Na$_2^+$ in liquid THF, local specific interactions between the solute and solvent lead to changes in chemical identity that create a kinetic trap that effectively prevents the molecule from dissociating. For both systems, this time-integral of work expression captures the key nonequilibrium effects during bond breaking, providing an example of how solution-phase energy surfaces may be constructed and indicating how both a gas-phase energy surface and potential of mean force are inadequate for describing solution-phase dynamics. In Chapter 3, reprinted with permission from Andy Vong and Benjamin J. Schwartz ``Bond-Breaking Reactions Encounter Distinct Solvent Environments Causing Breakdown of Linear Response" \textit{J. Phys. Chem. Lett.} \textbf{2022}, \textit{13}, 6783--6791, the nature of the solvent dynamics during the photodissociation of Na$_2^+$ in liquid Ar are followed along the bond-length coordinate. Surprisingly, we find that the solute experiences a small number of solvent environments that change in a discrete fashion as the bond lengthens. We also test a common assumption about nonequilibrium solvent fluctuations, the linear response approximation, and find that linear response fails by all measures, even when nonstationarity of solvent dynamics is considered. The observation of distinct solvent response environments with a solvent that can undergo only translational motions highlights the complexity of solute-solvent interactions, but that there are only a few environments give hope to the idea that solvation dynamics can be understood for solution-phase reactions that explore a wide configuration space, such as photodissociation. In Chapter 4, reprinted with permission from Andy Vong, Kenneth J. Mei, Devon R. Widmer, and Benjamin J. Schwartz ``Solvent Control of Chemical Identity Can Change Photodissociation into Photoisomerization" \textit{J. Phys. Chem. Lett.} \textbf{2022}, \textit{13}, 7931--7938, we improve upon the dynamical energy surface of Na$_2^+$ in THF by explicitly considering the motion of neighboring solvent molecules. Moderate locally-specific solute-solvent interactions can make it more appropriate to think of neighboring solvent molecules as a part of the solute's chemical identity. By focusing on the dynamics of a Na$_2$(THF)$_n^+$ complex, rather than just Na$_2^+$, we identify a second reaction coordinate and formulate a two-dimensional dynamical energy surface. This new energy surface highlights how solvent effects changes what would be a strictly dissociative reaction in the gas phase into a two-step, sequential reaction with the first step similar to a photoisomerization reaction, and the second step being a weakly dissociative step. Overall, this work serves as a reference point for developing a framework for thinking about solution-phase chemistry by considering how energy surfaces might be constructed for these reactions and detailing how the solute can experience discrete changes in solvent dynamics and environments

Revival: Environmental Particles (1993)

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Publisher : CRC Press
ISBN 13 : 1351270796
Total Pages : 438 pages
Book Rating : 4.3/5 (512 download)

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Book Synopsis Revival: Environmental Particles (1993) by : Jacques Buffle

Download or read book Revival: Environmental Particles (1993) written by Jacques Buffle and published by CRC Press. This book was released on 2018-10-24 with total page 438 pages. Available in PDF, EPUB and Kindle. Book excerpt: Environmental Particles, Volume 2 presents a review of the sampling, characterization, and behavior of particles in air, water, sediments, and solids. The book analyzes the formation, aggregation, transport, and conversion of particles, and evaluates the capabilities of physical and chemical analytic methods. It also discusses physicochemical properties of environmental particles, their spectroscopic characterization and colloid chemical properties, and how they affect biochemical and toxicological processes. This book is an important reference for environmental chemists, limnologists, oceanographers, air and soil scientists, analytical chemists, environmental engineers, students, and more.

Nanoporous Materials IV

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Publisher : Elsevier
ISBN 13 : 0080456529
Total Pages : 1006 pages
Book Rating : 4.0/5 (84 download)

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Book Synopsis Nanoporous Materials IV by : Abdel Sayari

Download or read book Nanoporous Materials IV written by Abdel Sayari and published by Elsevier. This book was released on 2005-05-04 with total page 1006 pages. Available in PDF, EPUB and Kindle. Book excerpt: Nanoporous Materials IV contains the invited lectures and peer-reviewed oral and poster contributions to be presented at the 4th International Symposium on Nanoporous Materials, which will be hosted in Niagara Falls, Ontario, Canada, June 7-10, 2005. This volume covers complementary approaches to and recent advances in the field of nanostructured materials with pore sizes larger than 1nm, such as periodic mesoporous molecular sieves (e.g., MCM-41 and SBA-15) and related materials including clays, ordered mesoporous carbons, colloidal crystal templated materials, porous polymers and sol gels. The broad range of topics covered in relation to the synthesis and characterization of ordered mesoporous materials are of great importance for advanced adsorption, catalytic, separation and environmental processes as well as for the development of nanotechnology. This volume contains over 120 contributions related to the synthesis of ordered mesoporous silicas, organosilicas, nonsiliceous inorganic materials, carbons, polymers and related materials, their characterization and applications in adsorption, catalysis and environmental clean up. * Unique contributions brings readers up-to-date on new research and application developments * Figures and tables supplement comprehensive topics * Extensive author and subject index

Environmental Particles

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Publisher : Springer
ISBN 13 :
Total Pages : 456 pages
Book Rating : 4.F/5 ( download)

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Book Synopsis Environmental Particles by : Jacques Buffle

Download or read book Environmental Particles written by Jacques Buffle and published by Springer. This book was released on 1992 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: Environmental Particles, Volume 2 presents a critical review of the sampling, characterization, and behavior of particles in air, surface and ground water, sediments, and solids. The book analyzes the formation, aggregation, transport, and conversion of particles, and it evaluates the capabilities of physical and chemical methods of analysis. It also discusses physicochemical properties of environmental particles, their spectroscopic characterization and colloid chemical properties, and how they affect biochemical and/or toxicological processes. The book will be an important reference for environmental chemists and physicists, limnologists, oceanographers, air and soil scientists, analytical chemists, environmental engineers, and students.

Solvation Thermodynamics

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Publisher : Springer Science & Business Media
ISBN 13 : 1475765509
Total Pages : 253 pages
Book Rating : 4.4/5 (757 download)

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Book Synopsis Solvation Thermodynamics by : Arieh Y. Ben-Naim

Download or read book Solvation Thermodynamics written by Arieh Y. Ben-Naim and published by Springer Science & Business Media. This book was released on 2013-03-09 with total page 253 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book deals with a subject that has been studied since the beginning of physical chemistry. Despite the thousands of articles and scores of books devoted to solvation thermodynamics, I feel that some fundamen tal and well-established concepts underlying the traditional approach to this subject are not satisfactory and need revision. The main reason for this need is that solvation thermodynamics has traditionally been treated in the context of classical (macroscopic) ther modynamics alone. However, solvation is inherently a molecular pro cess, dependent upon local rather than macroscopic properties of the system. Therefore, the starting point should be based on statistical mechanical methods. For many years it has been believed that certain thermodynamic quantities, such as the standard free energy (or enthalpy or entropy) of solution, may be used as measures of the corresponding functions of solvation of a given solute in a given solvent. I first challenged this notion in a paper published in 1978 based on analysis at the molecular level. During the past ten years, I have introduced several new quantities which, in my opinion, should replace the conventional measures of solvation thermodynamics. To avoid confusing the new quantities with those referred to conventionally in the literature as standard quantities of solvation, I called these "nonconventional," "generalized," and "local" standard quantities and attempted to point out the advantages of these new quantities over the conventional ones.

Modern Physical Organic Chemistry

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Publisher : University Science Books
ISBN 13 : 9781891389313
Total Pages : 1148 pages
Book Rating : 4.3/5 (893 download)

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Book Synopsis Modern Physical Organic Chemistry by : Eric V. Anslyn

Download or read book Modern Physical Organic Chemistry written by Eric V. Anslyn and published by University Science Books. This book was released on 2006 with total page 1148 pages. Available in PDF, EPUB and Kindle. Book excerpt: In additionto covering thoroughly the core areas of physical organic chemistry -structure and mechanism - this book will escortthe practitioner of organic chemistry into a field that has been thoroughlyupdated.

Chemistry

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ISBN 13 : 9780321413703
Total Pages : 1233 pages
Book Rating : 4.4/5 (137 download)

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Book Synopsis Chemistry by : Bruce Averill

Download or read book Chemistry written by Bruce Averill and published by . This book was released on 2007 with total page 1233 pages. Available in PDF, EPUB and Kindle. Book excerpt: Emphasises on contemporary applications and an intuitive problem-solving approach that helps students discover the exciting potential of chemical science. This book incorporates fresh applications from the three major areas of modern research: materials, environmental chemistry, and biological science.

Organic Pollutants in the Environment

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ISBN 13 :
Total Pages : 220 pages
Book Rating : 4.F/5 ( download)

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Book Synopsis Organic Pollutants in the Environment by : James W. Blackburn

Download or read book Organic Pollutants in the Environment written by James W. Blackburn and published by . This book was released on 1996 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Physical Inorganic Chemistry

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Publisher : John Wiley & Sons
ISBN 13 : 0470602554
Total Pages : 620 pages
Book Rating : 4.4/5 (76 download)

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Book Synopsis Physical Inorganic Chemistry by : Andreja Bakac

Download or read book Physical Inorganic Chemistry written by Andreja Bakac and published by John Wiley & Sons. This book was released on 2010-04-22 with total page 620 pages. Available in PDF, EPUB and Kindle. Book excerpt: This go-to text provides information and insight into physical inorganic chemistry essential to our understanding of chemical reactions on the molecular level. One of the only books in the field of inorganic physical chemistry with an emphasis on mechanisms, it features contributors at the forefront of research in their particular fields. This essential text discusses the latest developments in a number of topics currently among the most debated and researched in the world of chemistry, related to the future of solar energy, hydrogen energy, biorenewables, catalysis, environment, atmosphere, and human health.

Nanoporous Materials

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ISBN 13 :
Total Pages : 1020 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Nanoporous Materials by :

Download or read book Nanoporous Materials written by and published by . This book was released on 2005 with total page 1020 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Deep Eutectic Solvents

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Publisher : John Wiley & Sons
ISBN 13 : 3527345183
Total Pages : 384 pages
Book Rating : 4.5/5 (273 download)

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Book Synopsis Deep Eutectic Solvents by : Diego J. Ramón

Download or read book Deep Eutectic Solvents written by Diego J. Ramón and published by John Wiley & Sons. This book was released on 2020-01-13 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt: A useful guide to the fundamentals and applications of deep eutectic solvents Deep Eutectic Solvents contains a comprehensive review of the use of deep eutectic solvents (DESs) as an environmentally benign alternative reaction media for chemical transformations and processes. The contributors cover a range of topics including synthesis, structure, properties, toxicity and biodegradability of DESs. The book also explores myriad applications in various disciplines, such as organic synthesis and (bio)catalysis, electrochemistry, extraction, analytical chemistry, polymerizations, (nano)materials preparation, biomass processing, and gas adsorption. The book is aimed at organic chemists, catalytic chemists, pharmaceutical chemists, biochemists, electrochemists, and others involved in the design of eco-friendly reactions and processes. This important book: -Explores the promise of DESs as an environmentally benign alternative to hazardous organic solvents -Covers the synthesis, structure, properties (incl. toxicity) as well as a wide range of applications -Offers a springboard for stimulating critical discussion and encouraging further advances in the field Deep Eutectic Solvents is an interdisciplinary resource for researchers in academia and industry interested in the many uses of DESs as an environmentally benign alternative reaction media.

Solvent Effects in Chemistry

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Publisher : John Wiley & Sons
ISBN 13 : 1119030986
Total Pages : 241 pages
Book Rating : 4.1/5 (19 download)

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Book Synopsis Solvent Effects in Chemistry by : Erwin Buncel

Download or read book Solvent Effects in Chemistry written by Erwin Buncel and published by John Wiley & Sons. This book was released on 2015-08-03 with total page 241 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book introduces the concepts, theory and experimental knowledge concerning solvent effects on the rate and equilibrium of chemical reactions of all kinds. It begins with basic thermodynamics and kinetics, building on this foundation to demonstrate how a more detailed understanding of these effects may be used to aid in determination of reaction mechanisms, and to aid in planning syntheses. Consideration is given to theoretical calculations (quantum chemistry, molecular dynamics, etc.), to statistical methods (chemometrics), and to modern day concerns such as "green" chemistry, where utilization and disposal of chemical waste or by-products in an environmentally safe way is as important as achieving the desired end products by all chemists nowadays. The treatment progresses from elementary to advanced material in straightforward fashion. The more advanced topics are not developed in an overly rigorous way so that upper-level undergraduates, graduates, and newcomers to the field can grasp the concepts easily.

Department of Energy Office of Science--issues and Opportunities

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ISBN 13 :
Total Pages : 248 pages
Book Rating : 4.0/5 ( download)

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Book Synopsis Department of Energy Office of Science--issues and Opportunities by : United States. Congress. House. Committee on Science. Subcommittee on Energy

Download or read book Department of Energy Office of Science--issues and Opportunities written by United States. Congress. House. Committee on Science. Subcommittee on Energy and published by . This book was released on 2002 with total page 248 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Environmental Organic Chemistry

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Publisher : John Wiley & Sons
ISBN 13 : 0471743992
Total Pages : 1329 pages
Book Rating : 4.4/5 (717 download)

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Book Synopsis Environmental Organic Chemistry by : René P. Schwarzenbach

Download or read book Environmental Organic Chemistry written by René P. Schwarzenbach and published by John Wiley & Sons. This book was released on 2005-06-24 with total page 1329 pages. Available in PDF, EPUB and Kindle. Book excerpt: Environmental Organic Chemistry focuses on environmental factors that govern the processes that determine the fate of organic chemicals in natural and engineered systems. The information discovered is then applied to quantitatively assessing the environmental behaviour of organic chemicals. Now in its 2nd edition this book takes a more holistic view on physical-chemical properties of organic compounds. It includes new topics that address aspects of gas/solid partitioning, bioaccumulation, and transformations in the atmosphere. Structures chapters into basic and sophisticated sections Contains illustrative examples, problems and case studies Examines the fundamental aspects of organic, physical and inorganic chemistry - applied to environmentally relevant problems Addresses problems and case studies in one volume

Sedimentary Carbonate Minerals

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Publisher : Springer Science & Business Media
ISBN 13 : 3642654746
Total Pages : 310 pages
Book Rating : 4.6/5 (426 download)

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Book Synopsis Sedimentary Carbonate Minerals by : F. Lippmann

Download or read book Sedimentary Carbonate Minerals written by F. Lippmann and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: and their identification obviates individual thermochemical studies on every genus. The stability relations among sedimentary carbonate minerals are now more or less well known. The common rock-forming minerals cal cite and dolomite are indeed stable phases in the pertinent systems. Most other carbonate minerals of similar composition which are known to occur in the younger sediments are metastable with respect to calcite, dolomite, and magnesite. This implies that the sedimentation of carbon ates is determined only in part by stability relations. Kinetic factors, which allow the formation of metastable minerals, appear to be more important. Although the diagenetic transformations leading to stable minerals take place by virtue of thermodynamic requirements, the reac tions themselves are triggered by kinetic factors as well. Some of the reactions leading from metastable to stable carbonate assemblages are susceptible to simulation in the laboratory; others (e. g. dolomitization) appear to be so slow that they can be studied only in analogous systems characterized by reasonable reaction rates. In all attempts to explain the possible mechanisms of such reactions, we must consider the crystal structures of the final products as well as of the starting materials. This is another viewpoint from which mineralogy is important to carbonate petrology, if we regard the crystal chemistry of minerals as a part of mineralogy. A certain parallelism with clay mineralogy suggests itself.

Handbook of Physical-Chemical Properties and Environmental Fate for Organic Chemicals, Second Edition

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Publisher : CRC Press
ISBN 13 : 9781566706872
Total Pages : 1000 pages
Book Rating : 4.7/5 (68 download)

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Book Synopsis Handbook of Physical-Chemical Properties and Environmental Fate for Organic Chemicals, Second Edition by : Donald Mackay

Download or read book Handbook of Physical-Chemical Properties and Environmental Fate for Organic Chemicals, Second Edition written by Donald Mackay and published by CRC Press. This book was released on 2006-03-14 with total page 1000 pages. Available in PDF, EPUB and Kindle. Book excerpt: Transport and transformation processes are key for determining how humans and other organisms are exposed to chemicals. These processes are largely controlled by the chemicals’ physical-chemical properties. This new edition of the Handbook of Physical-Chemical Properties and Environmental Fate for Organic Chemicals is a comprehensive series in four volumes that serves as a reference source for environmentally relevant physical-chemical property data of numerous groups of chemical substances. The handbook contains physical-chemical property data from peer-reviewed journals and other valuable sources on over 1200 chemicals of environmental concern. The handbook contains new data on the temperature dependence of selected physical-chemical properties, which allows scientists and engineers to perform better chemical assessments for climatic conditions outside the 20–25-degree range for which property values are generally reported. This second edition of the Handbook of Physical-Chemical Properties and Environmental Fate for Organic Chemicals is an essential reference for university libraries, regulatory agencies, consultants, and industry professionals, particularly those concerned with chemical synthesis, emissions, fate, persistence, long-range transport, bioaccumulation, exposure, and biological effects of chemicals in the environment. This resource is also available on CD-ROM