Inferring Phylogenies

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Inferring Phylogenies

Author : Joseph Felsenstein
Publisher : Sinauer Associates Incorporated
ISBN 13 : 9780878931774
Total Pages : 664 pages
Book Rating : 4.9/5 (317 download)

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Book Synopsis Inferring Phylogenies by : Joseph Felsenstein

Download or read book Inferring Phylogenies written by Joseph Felsenstein and published by Sinauer Associates Incorporated. This book was released on 2004-01 with total page 664 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenies, or evolutionary trees, are the basic structures necessary to think about and analyze differences between species. Statistical, computational, and algorithmic work in this field has been ongoing for four decades now, and there have been great advances in understanding. Yet no book has summarized this work. Inferring Phylogenies does just that in a single, compact volume. Phylogenies are inferred with various kinds of data. This book concentrates on some of the central ones: discretely coded characters, molecular sequences, gene frequencies, and quantitative traits. Also covered are restriction sites, RAPDs, and microsatellites.

Morphology, Shape and Phylogeny

Author : Norman MacLeod
Publisher : CRC Press
ISBN 13 : 0203165179
Total Pages : 321 pages
Book Rating : 4.2/5 (31 download)

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Book Synopsis Morphology, Shape and Phylogeny by : Norman MacLeod

Download or read book Morphology, Shape and Phylogeny written by Norman MacLeod and published by CRC Press. This book was released on 2002-02-07 with total page 321 pages. Available in PDF, EPUB and Kindle. Book excerpt: Generally, biologists and mathematicians who study the shape and form of organisms have largely been working in isolation from those who work on evolutionary relationships through the analysis of common characteristics. Increasingly however, dialogue between the two communities is beginning to develop - but other than a handful of journal papers, there has been no formal, published discussion on this subject. This timely book summarises the interdisciplinary work that has taken place and will stimulate additional research into these topics. Any scientist working on evolutionary relationships will find this volume invaluable.

Phylogenetic Inference, Selection Theory, and History of Science

Author : Anthony William Fairbank Edwards
Publisher : Cambridge University Press
ISBN 13 : 1107111722
Total Pages : 553 pages
Book Rating : 4.1/5 (71 download)

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Book Synopsis Phylogenetic Inference, Selection Theory, and History of Science by : Anthony William Fairbank Edwards

Download or read book Phylogenetic Inference, Selection Theory, and History of Science written by Anthony William Fairbank Edwards and published by Cambridge University Press. This book was released on 2018-07-19 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: Seminal papers by A. W. F. Edwards, published together for the first time with commentaries from leading experts to contextualise his contribution.

Understanding Bioinformatics

Author : Marketa J. Zvelebil
Publisher : Garland Science
ISBN 13 : 9780815340249
Total Pages : 804 pages
Book Rating : 4.3/5 (42 download)

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Book Synopsis Understanding Bioinformatics by : Marketa J. Zvelebil

Download or read book Understanding Bioinformatics written by Marketa J. Zvelebil and published by Garland Science. This book was released on 2008 with total page 804 pages. Available in PDF, EPUB and Kindle. Book excerpt: Suitable for advanced undergraduates & postgraduates, this book provides a definitive guide to bioinformatics. It takes a conceptual approach & guides the reader from first principles through to an understanding of the computational techniques & the key algorithms.

Parsimony, Phylogeny, and Genomics

Author : Victor A. Albert
Publisher : OUP Oxford
ISBN 13 : 0191524085
Total Pages : 238 pages
Book Rating : 4.1/5 (915 download)

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Book Synopsis Parsimony, Phylogeny, and Genomics by : Victor A. Albert

Download or read book Parsimony, Phylogeny, and Genomics written by Victor A. Albert and published by OUP Oxford. This book was released on 2005-03-24 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Parsimony analysis (cladistics) has long been one of the most widely used methods of phylogenetic inference in the fields of systematic and evolutionary biology. Moreover it has mathematical attributes that lend itself for use with complex, genomic-scale data sets. This book demonstrates the potential that this powerful hierarchical data summarization method also has for both structural and functional comparative genomic research.

BIOINFORMATICS: METHODS AND APPLICATIONS

Author : S. C. RASTOGI
Publisher : PHI Learning Pvt. Ltd.
ISBN 13 : 8120347854
Total Pages : 644 pages
Book Rating : 4.1/5 (23 download)

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Book Synopsis BIOINFORMATICS: METHODS AND APPLICATIONS by : S. C. RASTOGI

Download or read book BIOINFORMATICS: METHODS AND APPLICATIONS written by S. C. RASTOGI and published by PHI Learning Pvt. Ltd.. This book was released on 2013-05-22 with total page 644 pages. Available in PDF, EPUB and Kindle. Book excerpt: Designed as a text for students and professionals pursuing careers in the fields of molecular biology, pharmacy and bioinformatics, the fourth edition continues to offer a fascinating and authoritative treatment of the entire spectrum of bioinformatics, covering a wide range of high-throughput technologies. In this edition, four new chapters are included and two chapters are updated. As a student-friendly text, it embodies several pedagogic features such as detailed examples, chapter-end problems, numerous tables, a large number of diagrams, flow charts, a comprehensive glossary and an up-to-date bibliography. This book should prove an invaluable asset to students and researchers in the fields of bioinformatics, biotechnology, computer-aided drug design, information technology, medical diagnostics, molecular biology and pharmaceutical industry. NEW TO THE FOURTH EDITION: • Includes four new chapters—Introduction to Biological Databases, Introduction to Phylogenetic, Methods of Phylogenic analysis and RNA Predict. • Updates chapters on Information Search and Data Retrieval and Alignment of Multiple Sequences. • Incorporates Problem Sets containing more than 250 problems and Multiple Choice Questions so that students can test their knowledge and understanding. Key Features • State-of-the-art technologies for gene identification, molecular modeling and monitoring of cellular processes • Data mining, analysis, classification, interpretation and efficient structure determination of genomes and proteomes • Importance of cell cycle for discovering new drug targets and their ligands • Computer-aided drug design and ADME-Tox property prediction Companion website www.phindia.com/rastogi provides useful resources for the teachers as well as for the students.

Phylogenomics

Author : Christoph Bleidorn
Publisher : Springer
ISBN 13 : 3319540645
Total Pages : 227 pages
Book Rating : 4.3/5 (195 download)

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Book Synopsis Phylogenomics by : Christoph Bleidorn

Download or read book Phylogenomics written by Christoph Bleidorn and published by Springer. This book was released on 2017-06-01 with total page 227 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique textbook provides a clear and concise overview of the key principles of the complex field of phylogenomics, with a particular focus on sequencing technologies that are crucial to studying and understanding interrelations in evolutionary genomics. It includes chapters dedicated to the analysis of nucleotide sequences using assembling and alignment methods and also discusses the main strategies for phylogenetic studies, systematic errors and their correction. This highly readable textbook is intended for graduate students and young researchers with an interest in phylogenetics and evolutionary developmental biology.

The Phylogenetic Handbook

Author : Philippe Lemey
Publisher : Cambridge University Press
ISBN 13 : 1139478613
Total Pages : 763 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis The Phylogenetic Handbook by : Philippe Lemey

Download or read book The Phylogenetic Handbook written by Philippe Lemey and published by Cambridge University Press. This book was released on 2009-03-26 with total page 763 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six new chapters, covering topics such as Bayesian inference, tree topology testing and the impact of recombination on phylogenies, as well as a detailed section on molecular adaptation. The book has a stronger focus on hypothesis testing than the previous edition, with more extensive discussions on recombination analysis, detecting molecular adaptation and genealogy-based population genetics. Many chapters include elaborate practical sections, which have been updated to introduce the reader to the most recent versions of sequence analysis and phylogeny software, including BLAST, FastA, Clustal, T-coffee, Muscle, DAMBE, Tree-puzzle, Phylip, MEGA, PAUP*, IQPNNI, CONSEL, ModelTest, Prottest, PAML, HYPHY, MrBayes, BEAST, LAMARC, SplitsTree, and RDP. Many analysis tools are described by their original authors, resulting in clear explanations that constitute an ideal teaching guide for advanced-level undergraduate and graduate students.

Logic Programming and Nonmonotonic Reasoning

Author : Esra Erdem
Publisher : Springer Science & Business Media
ISBN 13 : 3642042376
Total Pages : 670 pages
Book Rating : 4.6/5 (42 download)

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Book Synopsis Logic Programming and Nonmonotonic Reasoning by : Esra Erdem

Download or read book Logic Programming and Nonmonotonic Reasoning written by Esra Erdem and published by Springer Science & Business Media. This book was released on 2009-09-07 with total page 670 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the proceedings of the 10th International Conference on Logic Programming and Nonmonotonic Reasoning (LPNMR 2009), held during September 14–18, 2009 in Potsdam, Germany. LPNMR is a forum for exchanging ideas on declarative logic programming, nonmonotonic reasoning and knowledge representation. The aim of the c- ference is to facilitate interaction between researchers interested in the design and implementation of logic-based programming languages and database s- tems, and researchers who work in the areas of knowledge representation and nonmonotonic reasoning. LPNMR strives to encompass theoretical and expe- mental studies that have led or will lead to the construction of practical systems for declarative programming and knowledge representation. The special theme of LPNMR 2009 was “Applications of Logic Progr- ming and Nonmonotonic Reasoning” in general and “Answer Set Programming (ASP)” in particular. LPNMR 2009 aimed at providing a comprehensive survey of the state of the art of ASP/LPNMR applications. The special theme was re?ected by dedicating an entire dayof the conference to applications. Apart from special sessions devoted to original and signi?cant ASP/LPNMR applications, we solicited contributions providing an overview of existing successful applications of ASP/LPNMR systems. The presentations on applications were accompanied by two panels, one on existing and another on future applications of ASP/LPNMR.

Analysis of Phylogenetics and Evolution with R

Author : Emmanuel Paradis
Publisher : Springer Science & Business Media
ISBN 13 : 1461417430
Total Pages : 401 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Analysis of Phylogenetics and Evolution with R by : Emmanuel Paradis

Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis and published by Springer Science & Business Media. This book was released on 2011-11-06 with total page 401 pages. Available in PDF, EPUB and Kindle. Book excerpt: The increasing availability of molecular and genetic databases coupled with the growing power of computers gives biologists opportunities to address new issues, such as the patterns of molecular evolution, and re-assess old ones, such as the role of adaptation in species diversification. In the second edition, the book continues to integrate a wide variety of data analysis methods into a single and flexible interface: the R language. This open source language is available for a wide range of computer systems and has been adopted as a computational environment by many authors of statistical software. Adopting R as a main tool for phylogenetic analyses will ease the workflow in biologists' data analyses, ensure greater scientific repeatability, and enhance the exchange of ideas and methodological developments. The second edition is completed updated, covering the full gamut of R packages for this area that have been introduced to the market since its previous publication five years ago. There is also a new chapter on the simulation of evolutionary data. Graduate students and researchers in evolutionary biology can use this book as a reference for data analyses, whereas researchers in bioinformatics interested in evolutionary analyses will learn how to implement these methods in R. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered: manipulation of phylogenetic data, phylogeny estimation, tree drawing, phylogenetic comparative methods, and estimation of ancestral characters. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

Bioinformatics

Author : Dilip K Arora
Publisher : Elsevier
ISBN 13 : 0080463703
Total Pages : 351 pages
Book Rating : 4.0/5 (84 download)

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Book Synopsis Bioinformatics by : Dilip K Arora

Download or read book Bioinformatics written by Dilip K Arora and published by Elsevier. This book was released on 2006-08-15 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: The advances in genomic technologies, such as microarrays and high throughput sequencing,have expanded the realm of possibilities for capturing data and analyzing it using automatedcomputer driven bioinformatics tools. With the completion of the sequencing of genomes ofhuman and several model organisms, a quest for scientific discoveries being fueled byintegrative and multidimensional techniques in mathematics and computational sciences. Inthis volume, leading researchers and experts have provided an overview of significantconcepts from biological, mathematical, and computational perspectives. It provides a high level view of fungal genomic data integration and annotation, classification of proteins and identification of vaccine targets, identification of secretome or secreted proteins in fungal genomes, as well as tools for analyzing microarray expressionprofiles. Provides a survey of theoretical underpinnings on the technological tools and applications Discusses the tools utilized for the annotation of fungal genomes and addresses issues related to automated annotation generation in a high throughput biotechnology environment Describes the applications of the concepts and methodologies presented throughout the book

Drosophila Inversion Polymorphism

Author : Costas B. Krimbas
Publisher : CRC Press
ISBN 13 : 9780849365478
Total Pages : 680 pages
Book Rating : 4.3/5 (654 download)

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Book Synopsis Drosophila Inversion Polymorphism by : Costas B. Krimbas

Download or read book Drosophila Inversion Polymorphism written by Costas B. Krimbas and published by CRC Press. This book was released on 1992-08-21 with total page 680 pages. Available in PDF, EPUB and Kindle. Book excerpt: Inversion polymorphism in Drosophila has long served as a research subject for a variety of evolutionary studies and continues to be extremely important in understanding evolutionary principles today. Until now, no single volume has ever been assembled as a summary of this work. Drosophila Inversion Polymorphism provides background information, explores new and rigorous approaches to reconstructing phylogenetic relationships from inversion variation, and discusses inversion polymorphism in the six most studied species groups. Some chapters examine general principles and conclusions, some present detailed data sets (many of which have never before been published), and others offer detailed chromosome maps for identification. The book is a one-of-a-kind source of summary discussions and data ripe for analysis. Geneticists, evolutionary biologists, biologists, and all investigators researching inversion polymorphisms should consider Drosophila Inversion Polymorphism a "must-have" volume.

Phylogenies and the Comparative Method in Animal Behavior

Author : Emília P. Martins
Publisher : Oxford University Press, USA
ISBN 13 : 0195092104
Total Pages : 429 pages
Book Rating : 4.1/5 (95 download)

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Book Synopsis Phylogenies and the Comparative Method in Animal Behavior by : Emília P. Martins

Download or read book Phylogenies and the Comparative Method in Animal Behavior written by Emília P. Martins and published by Oxford University Press, USA. This book was released on 1996 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the last ten years, the "comparative method" has been revolutionized by modern statistical ways of incorporating phylogenies into the design and analysis of comparative studies. The results of this revolution are particularly important in the study of animal behavior, which has relied on interspecific comparisons to infer universal trends and evolutionary patterns. The chapters of this edited volume consider the impact of modern phylogenetic comparative methods on the study of animal behavior and discuss the main issues that need to be considered in design and analysis of a comparative study, considers possible differences between the evolution of behavior and the evolution of morphology, and reviews how phylogenetic comparative studies have been used in certain areas of behavioral research.

Numerical Taxonomy

Author : Joseph Felsenstein
Publisher : Springer Science & Business Media
ISBN 13 : 3642690246
Total Pages : 655 pages
Book Rating : 4.6/5 (426 download)

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Book Synopsis Numerical Taxonomy by : Joseph Felsenstein

Download or read book Numerical Taxonomy written by Joseph Felsenstein and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 655 pages. Available in PDF, EPUB and Kindle. Book excerpt: The NATO Advanced Study Institute on Numerical Taxonomy took place on the 4th - 16th of July, 1982, at the Kur- und Kongresshotel Residenz in Bad Windsheim, Federal Republic of Germany. This volume is the proceedings of that meeting, and contains papers by over two-thirds of the participants in the Institute. Numerical taxonomy has been attracting increased attention from systematists and evolutionary biologists. It is an area which has been marked by debate and conflict, sometimes bitter. Happily, this meeting took place in an atmosphere of "GemUtlichkeit", though scarcely of unanimity. I believe that these papers will show that there is an increased understanding by each taxonomic school of each others' positions. This augurs a period in which the debates become more concrete and specific. Let us hope that they take place in a scientific atmosphere which has occasionally been lacking in the past. Since the order of presentation of papers in the meeting was affected by time constraints, I have taken the liberty of rearranging them into a more coherent subject ordering. The first group of papers, taken from the opening and closing days of the meeting, debate philosophies of classification. The next two sections have papers on congruence, clustering and ordination. A notable concern of these participants is the comparison and testing of classifications. This has been missing from many previous discussions of numerical classification.

The Evolution of Cultural Diversity

Author : Ruth Mace
Publisher : Routledge
ISBN 13 : 1315418592
Total Pages : 334 pages
Book Rating : 4.3/5 (154 download)

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Book Synopsis The Evolution of Cultural Diversity by : Ruth Mace

Download or read book The Evolution of Cultural Diversity written by Ruth Mace and published by Routledge. This book was released on 2016-09-16 with total page 334 pages. Available in PDF, EPUB and Kindle. Book excerpt: Virtually all aspects of human behavior show enormous variation both within and between cultural groups, including material culture, social organization and language. Thousands of distinct cultural groups exist: about 6,000 languages are spoken today, and it is thought that a far greater number of languages existed in the past but became extinct. Using a Darwinian approach, this book seeks to explain this rich cultural variation. There are a number of theoretical reasons to believe that cultural diversification might be tree-like, that is phylogenetic: material and non-material culture is clearly inherited by descendants, there is descent with modification, and languages appear to be hierarchically related. There are also a number of theoretical reasons to believe that cultural evolution is not tree-like: cultural inheritance is not Mendelian and can indeed be vertical, horizontal or oblique, evidence of borrowing abounds, cultures are not necessarily biological populations and can be transient and complex. Here, for the first time, this title tackles these questions of cultural evolution empirically and quantitatively, using a range of case studies from Africa, the Pacific, Europe, Asia and America. A range of powerful theoretical tools developed in evolutionary biology is used to test detailed hypotheses about historical patterns and adaptive functions in cultural evolution. Evidence is amassed from archaeological, linguist and cultural datasets, from both recent and historical or pre-historical time periods. A unifying theme is that the phylogenetic approach is a useful and powerful framework, both for describing the evolutionary history of these traits, and also for testing adaptive hypotheses about their evolution and co-evolution. Contributors include archaeologists, anthropologists, evolutionary biologists and linguists, and this book will be of great interest to all those involved in these areas.

Beyond Cladistics

Author : David Mervyn Williams
Publisher : Univ of California Press
ISBN 13 : 0520267729
Total Pages : 352 pages
Book Rating : 4.5/5 (22 download)

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Book Synopsis Beyond Cladistics by : David Mervyn Williams

Download or read book Beyond Cladistics written by David Mervyn Williams and published by Univ of California Press. This book was released on 2010 with total page 352 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This multifarious volume does a splendid job of reflecting the breadth and depth of fundamental questions about the methods of systematics and biogeography, from the practical applications of conservation biology to issues of wide interest to evolutionary biologists."--Dr. Norman I. Platnick, American Museum of Natural History "A fun and informative volume that everyone interested in the subject will enjoy. This book is full of important discussions on Botany, Cladistics, and Biogeography."--Vicki Funk, National Museum of Natural History, Smithsonian Institution "The Branching Of A Paradigm is the intriguing theme of this volume on the myriad of ways cladistics has impacted modern biology. Surprises from floristics to recent thoughts on epistemology await the reader."--Dennis Stevenson, New York Botanical Garden

Codex Sinaiticus Arabicus and Its Family

Author : Robert Turnbull
Publisher : BRILL
ISBN 13 : 9004704612
Total Pages : 419 pages
Book Rating : 4.0/5 (47 download)

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Book Synopsis Codex Sinaiticus Arabicus and Its Family by : Robert Turnbull

Download or read book Codex Sinaiticus Arabicus and Its Family written by Robert Turnbull and published by BRILL. This book was released on 2024-10-21 with total page 419 pages. Available in PDF, EPUB and Kindle. Book excerpt: Arabic versions of the New Testament have been overlooked for too long. The Sinai New Finds of 1975 unearthed Codex Sinaiticus Arabicus which preserves an Arabic translation of the Gospels differing markedly from the Majority Text. Here Robert Turnbull undertakes a wide-ranging study of this version, discovering many lectionary manuscripts with the same text. Several open-access datasets are made available. Bayesian phylogenetics and other computational techniques are used to draw insights into the transmission history of this version and its place in the wider New Testament textual tradition. This Arabic version will be indispensable in future textual scholarship on the Gospels.