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Implementation Of Genetic Algorithms For Protein Structure Prediction Based On Lattice Models
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Book Synopsis Intelligent Computing Theories and Application by : De-Shuang Huang
Download or read book Intelligent Computing Theories and Application written by De-Shuang Huang and published by Springer. This book was released on 2016-07-11 with total page 882 pages. Available in PDF, EPUB and Kindle. Book excerpt: This two-volume set LNCS 9771 and LNCS 9772 constitutes - in conjunction with the volume LNAI 9773 - the refereed proceedings of the 12th International Conference on Intelligent Computing, ICIC 2016, held in Lanzhou, China, in August 2016. The 221 full papers and 15 short papers of the three proceedings volumes were carefully reviewed and selected from 639 submissions. The papers are organized in topical sections such as signal processing and image processing; information security, knowledge discovery, and data mining; systems biology and intelligent computing in computational biology; intelligent computing in scheduling; information security; advances in swarm intelligence: algorithms and applications; machine learning and data analysis for medical and engineering applications; evolutionary computation and learning; independent component analysis; compressed sensing, sparse coding; social computing; neural networks; nature inspired computing and optimization; genetic algorithms; signal processing; pattern recognition; biometrics recognition; image processing; information security; virtual reality and human-computer interaction; healthcare informatics theory and methods; artificial bee colony algorithms; differential evolution; memetic algorithms; swarm intelligence and optimization; soft computing; protein structure and function prediction; advances in swarm intelligence: algorithms and applications; optimization, neural network, and signal processing; biomedical informatics and image processing; machine learning; knowledge discovery and natural language processing; nature inspired computing and optimization; intelligent control and automation; intelligent data analysis and prediction; computer vision; knowledge representation and expert system; bioinformatics.
Book Synopsis Biomedical Data and Applications by : Amandeep S. Sidhu
Download or read book Biomedical Data and Applications written by Amandeep S. Sidhu and published by Springer Science & Business Media. This book was released on 2009-06-16 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: Compared with data from general application domains, modern biological data has many unique characteristics. The goal of this book is to cover data and applications identifying new issues and directions for future research in biomedical domain.
Book Synopsis Nature-inspired Methods in Chemometrics: Genetic Algorithms and Artificial Neural Networks by : Riccardo Leardi
Download or read book Nature-inspired Methods in Chemometrics: Genetic Algorithms and Artificial Neural Networks written by Riccardo Leardi and published by Elsevier. This book was released on 2003-12-03 with total page 402 pages. Available in PDF, EPUB and Kindle. Book excerpt: In recent years Genetic Algorithms (GA) and Artificial Neural Networks (ANN) have progressively increased in importance amongst the techniques routinely used in chemometrics. This book contains contributions from experts in the field is divided in two sections (GA and ANN). In each part, tutorial chapters are included in which the theoretical bases of each technique are expertly (but simply) described. These are followed by application chapters in which special emphasis will be given to the advantages of the application of GA or ANN to that specific problem, compared to classical techniques, and to the risks connected with its misuse. This book is of use to all those who are using or are interested in GA and ANN. Beginners can focus their attentions on the tutorials, whilst the most advanced readers will be more interested in looking at the applications of the techniques. It is also suitable as a reference book for students. - Subject matter is steadily increasing in importance - Comparison of Genetic Algorithms (GA) and Artificial Neural Networks (ANN) with the classical techniques - Suitable for both beginners and advanced researchers
Book Synopsis The Monte Carlo Approach To Biopolymers And Protein Folding by : Peter Grassberger
Download or read book The Monte Carlo Approach To Biopolymers And Protein Folding written by Peter Grassberger and published by World Scientific. This book was released on 1998-11-06 with total page 346 pages. Available in PDF, EPUB and Kindle. Book excerpt: Information on our detailed genetic code is increasing at a dramatic pace. We need to understand how that is translated into the three-dimensional structure of proteins in order to make use of the information. Progress in this field is hampered by the lack of precise force fields and of efficient codes for finding equilibrium configurations of heteropolymers. However, there has been rapid advance in recent years, and this volume discusses that.
Book Synopsis Prediction of Protein Structures, Functions, and Interactions by : Janusz M. Bujnicki
Download or read book Prediction of Protein Structures, Functions, and Interactions written by Janusz M. Bujnicki and published by John Wiley & Sons. This book was released on 2008-12-23 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt: The growing flood of new experimental data generated by genome sequencing has provided an impetus for the development of automated methods for predicting the functions of proteins that have been deduced by sequence analysis and lack experimental characterization. Prediction of Protein Structures, Functions and Interactions presents a comprehensive overview of methods for prediction of protein structure or function, with the emphasis on their availability and possibilities for their combined use. Methods of modeling of individual proteins, prediction of their interactions, and docking of complexes are put in the context of predicting gene ontology (biological process, molecular function, and cellular component) and discussed in the light of their contribution to the emerging field of systems biology. Topics covered include: first steps of protein sequence analysis and structure prediction automated prediction of protein function from sequence template-based prediction of three-dimensional protein structures: fold-recognition and comparative modelling template-free prediction of three-dimensional protein structures quality assessment of protein models prediction of molecular interactions: from small ligands to large protein complexes macromolecular docking integrating prediction of structure, function, and interactions Prediction of Protein Structures, Functions and Interactions focuses on the methods that have performed well in CASPs, and which are constantly developed and maintained, and are freely available to academic researchers either as web servers or programs for local installation. It is an essential guide to the newest, best methods for prediction of protein structure and functions, for researchers and advanced students working in structural bioinformatics, protein chemistry, structural biology and drug discovery.
Book Synopsis Applied Nature-Inspired Computing: Algorithms and Case Studies by : Nilanjan Dey
Download or read book Applied Nature-Inspired Computing: Algorithms and Case Studies written by Nilanjan Dey and published by Springer. This book was released on 2019-08-10 with total page 281 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents a cutting-edge research procedure in the Nature-Inspired Computing (NIC) domain and its connections with computational intelligence areas in real-world engineering applications. It introduces readers to a broad range of algorithms, such as genetic algorithms, particle swarm optimization, the firefly algorithm, flower pollination algorithm, collision-based optimization algorithm, bat algorithm, ant colony optimization, and multi-agent systems. In turn, it provides an overview of meta-heuristic algorithms, comparing the advantages and disadvantages of each. Moreover, the book provides a brief outline of the integration of nature-inspired computing techniques and various computational intelligence paradigms, and highlights nature-inspired computing techniques in a range of applications, including: evolutionary robotics, sports training planning, assessment of water distribution systems, flood simulation and forecasting, traffic control, gene expression analysis, antenna array design, and scheduling/dynamic resource management.
Book Synopsis Success in Evolutionary Computation by : Ang Yang
Download or read book Success in Evolutionary Computation written by Ang Yang and published by Springer. This book was released on 2008-03-22 with total page 372 pages. Available in PDF, EPUB and Kindle. Book excerpt: Evolutionary Computation (EC) includes a number of techniques such as Genetic Algorithms which have been used in a diverse range of highly successful applications. This book brings together some of these EC applications in fields including electronics, telecommunications, health, bioinformatics, supply chain and other engineering domains, to give the audience, including both EC researchers and practitioners, a glimpse of this exciting and rapidly-evolving field.
Book Synopsis Multi-Agent-Based Simulations Applied to Biological and Environmental Systems by : Adamatti, Diana Francisca
Download or read book Multi-Agent-Based Simulations Applied to Biological and Environmental Systems written by Adamatti, Diana Francisca and published by IGI Global. This book was released on 2016-12-12 with total page 428 pages. Available in PDF, EPUB and Kindle. Book excerpt: The discovery and development of new computational methods have expanded the capabilities and uses of simulations. With agent-based models, the applications of computer simulations are significantly enhanced. Multi-Agent-Based Simulations Applied to Biological and Environmental Systems is a pivotal reference source for the latest research on the implementation of autonomous agents in computer simulation paradigms. Featuring extensive coverage on relevant applications, such as biodiversity conservation, pollution reduction, and environmental risk assessment, this publication is an ideal source for researchers, academics, engineers, practitioners, and professionals seeking material on various issues surrounding the use of agent-based simulations.
Book Synopsis Encyclopedia of Artificial Intelligence by : Juan Ramon Rabunal
Download or read book Encyclopedia of Artificial Intelligence written by Juan Ramon Rabunal and published by IGI Global. This book was released on 2009-01-01 with total page 1640 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This book is a comprehensive and in-depth reference to the most recent developments in the field covering theoretical developments, techniques, technologies, among others"--Provided by publisher.
Book Synopsis Protein Folding and Self-Avoiding Walks Polyhedral Studies and Solutions by : Agnes Dittel
Download or read book Protein Folding and Self-Avoiding Walks Polyhedral Studies and Solutions written by Agnes Dittel and published by Logos Verlag Berlin GmbH. This book was released on 2008 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: The protein folding problem refers to the correlation of a protein's amino acid sequence and its native three-dimensional structure which is essential for functionality. It still constitutes one of the major challenges in computational biology. One commonly studied model for the protein folding problem is the HP lattice model in which proteins are considered in a fairly abstract representation. However, the HP model proteins exhibit significant parallels to proteins occurring in nature. The solution of the HP lattice mode as a combinatorial optimization problem has been proven to be NP-complete, and there have already been developed various different approaches for efficient algorithms. We study an integer programming formulation of the problem. Starting with an analysis of this model, where we concentrate on symmetry issues, we show how the model can be consolidated by exploiting symmetry properties of the underlying lattice. The main focus lies in the development of specific components of a branch-and-cut framework for the computation of solutions for the HP model by means of integer programming methods. In order to understand the structure of the model, we perform a series of polyhedral studies from which we derive two main classes of cutting planes. Furthermore, we exploit the knowledge of folding principles which are also valid for HP model proteins for the development of related branching strategies. For the solution of a special class of instances, we present an implementation of a genetic algorithm for the generation of primal feasible start solutions. Finally, we document the performance of the methods developed for each of the four topics (model consolidation, primal method, branching strategy and cutting planes) within the branch-and-cut procedure. We present computational results for different types of lattices, where we both consider known benchmark instances from literature and random instances.
Download or read book Cumulated Index Medicus written by and published by . This book was released on 1999 with total page 1860 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Learning Classifier Systems in Data Mining by : Larry Bull
Download or read book Learning Classifier Systems in Data Mining written by Larry Bull and published by Springer Science & Business Media. This book was released on 2008-05-29 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt: The ability of Learning Classifier Systems (LCS) to solve complex real-world problems is becoming clear. This book brings together work by a number of individuals who demonstrate the good performance of LCS in a variety of domains.
Book Synopsis Applications of Evolutionary Computation in Chemistry by : H.M. Cartwright
Download or read book Applications of Evolutionary Computation in Chemistry written by H.M. Cartwright and published by Springer Science & Business Media. This book was released on 2004-03-12 with total page 204 pages. Available in PDF, EPUB and Kindle. Book excerpt: H. M. Cartwright: An Introduction to Evolutionary Computation andEvolutionary Algorithms; B. Hartke: Application of Evolutionary Algorithms to Global Cluster Geometry Optimization; K.D.M. Harris, R.L. Johnston, S. Habershon: Application of Evolutionary Computation in Structure Solution from Diffraction Data; S. M.
Book Synopsis Algorithms and Architectures for Parallel Processing, Part II by : Yang Xiang
Download or read book Algorithms and Architectures for Parallel Processing, Part II written by Yang Xiang and published by Springer Science & Business Media. This book was released on 2011-10-07 with total page 431 pages. Available in PDF, EPUB and Kindle. Book excerpt: This two volume set LNCS 7016 and LNCS 7017 constitutes the refereed proceedings of the 11th International Conference on Algorithms and Architectures for Parallel Processing, ICA3PP 2011, held in Melbourne, Australia, in October 2011. The second volume includes 37 papers from one symposium and three workshops held together with ICA3PP 2011 main conference. These are 16 papers from the 2011 International Symposium on Advances of Distributed Computing and Networking (ADCN 2011), 10 papers of the 4th IEEE International Workshop on Internet and Distributed Computing Systems (IDCS 2011), 7 papers belonging to the III International Workshop on Multicore and Multithreaded Architectures and Algorithms (M2A2 2011), as well as 4 papers of the 1st IEEE International Workshop on Parallel Architectures for Bioinformatics Systems (HardBio 2011).
Book Synopsis Genetic Programming by : Maarten Keijzer
Download or read book Genetic Programming written by Maarten Keijzer and published by Springer Science & Business Media. This book was released on 2005-03-21 with total page 394 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 8th European Conference on Genetic Programming, EuroGP 2005, held in Lausanne, Switzerland in March/April 2005. The 20 revised plenary papers and 14 revised poster papers were carefully reviewed and selected from 64 submissions. Some of the papers deal with foundational, theoretical, or methodological aspects of genetic programming; others focus on applications in various areas, such as computer science, engineering, language processing, biology, and computational design, demonstrating that genetic programming is a powerful and practical problem solving tool.
Book Synopsis Principles and Practice of Constraint Programming by : Peter J. Stuckey
Download or read book Principles and Practice of Constraint Programming written by Peter J. Stuckey and published by Springer. This book was released on 2008-09-22 with total page 662 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the proceedings of the 14th International Conference on Principles and Practice of Constraint Programming (CP 2008) held in Sydney, Australia, September 14–18, 2008. The conference was held in conjunction with the International Conference on Automated Planning and Scheduling (ICAPS 2008) and the International Conference on Knowledge Representation and R- soning (KR 2008). Information about the conference can be found at the w- sitehttp://www. unimelb. edu. au/cp2008/. Held annually, the CP conference series is the premier international conference on constraint programming. The conference focuses on all aspects of computing with constraints. The CP conf- ence series is organized by the Association for Constraint Programming (ACP). Information about the conferences in the series can be found on the Web at http://www. cs. ualberta. ca/~ai/cp/. Information about ACP can be found athttp://www. a4cp. org/. CP 2008 included two calls for contributions: a call for research papers, - scribing novel contributions in the ?eld, and a call for application papers, - scribing applications of constraint technology. For the ?rst time authors could directly submit short papers for consideration by the committee. The research track received 84 long submissions and 21 short submissions and the application track received 15 long submissions. Each paper received at least three reviews, which the authors had the opportunity to see and to react to, before the papers and their reviews were discussed extensively by the members of the Program Committee.
Book Synopsis The Protein Folding Problem and Tertiary Structure Prediction by : Kenneth M.Jr. Merz
Download or read book The Protein Folding Problem and Tertiary Structure Prediction written by Kenneth M.Jr. Merz and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 585 pages. Available in PDF, EPUB and Kindle. Book excerpt: A solution to the protein folding problem has eluded researchers for more than 30 years. The stakes are high. Such a solution will make 40,000 more tertiary structures available for immediate study by translating the DNA sequence information in the sequence databases into three-dimensional protein structures. This translation will be indispensable for the analy sis of results from the Human Genome Project, de novo protein design, and many other areas of biotechnological research. Finally, an in-depth study of the rules of protein folding should provide vital clues to the protein fold ing process. The search for these rules is therefore an important objective for theoretical molecular biology. Both experimental and theoretical ap proaches have been used in the search for a solution, with many promising results but no general solution. In recent years, there has been an exponen tial increase in the power of computers. This has triggered an incredible outburst of theoretical approaches to solving the protein folding problem ranging from molecular dynamics-based studies of proteins in solution to the actual prediction of protein structures from first principles. This volume attempts to present a concise overview of these advances. Adrian Roitberg and Ron Elber describe the locally enhanced sam pling/simulated annealing conformational search algorithm (Chapter 1), which is potentially useful for the rapid conformational search of larger molecular systems.
