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Image Analysis In Biology
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Book Synopsis Bioimage Data Analysis Workflows by : Kota Miura
Download or read book Bioimage Data Analysis Workflows written by Kota Miura and published by Springer Nature. This book was released on 2019-10-17 with total page 178 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Open Access textbook provides students and researchers in the life sciences with essential practical information on how to quantitatively analyze data images. It refrains from focusing on theory, and instead uses practical examples and step-by step protocols to familiarize readers with the most commonly used image processing and analysis platforms such as ImageJ, MatLab and Python. Besides gaining knowhow on algorithm usage, readers will learn how to create an analysis pipeline by scripting language; these skills are important in order to document reproducible image analysis workflows. The textbook is chiefly intended for advanced undergraduates in the life sciences and biomedicine without a theoretical background in data analysis, as well as for postdocs, staff scientists and faculty members who need to perform regular quantitative analyses of microscopy images.
Download or read book Image Analysis written by Donat P. Hader and published by CRC Press. This book was released on 2000-08-23 with total page 488 pages. Available in PDF, EPUB and Kindle. Book excerpt: Automatic image analysis has become an important tool in many fields of biology, medicine, and other sciences. Since the first edition of Image Analysis: Methods and Applications, the development of both software and hardware technology has undergone quantum leaps. For example, specific mathematical filters have been developed for quality enhancement of original images and for extraction of specific features of interest. Also, more complex programs have been developed for the analysis of object forms in distinguishing cancer cells from normal tissue cells. Just as significant, three-dimensional analysis of proteins, organelles, or macroscopic objects is even more complex. In addition, recent space-based experiments have optimized techniques for the extraction of movement parameters of numerous motile objects. The second edition of Image Analysis: Methods and Applications addresses all these new developments. Moreover, two new chapters have been added. One focuses on images on the internet, and the other discusses microscope image restoration. These chapters add significantly to the existing body of information on Internet communication protocol and environment as well as to that on image file formats considerations. The materials also include a list of internet Web sites that pertain to digital images and software along with those that relate to image processing. With these considerations in mind, Image Analysis: Methods and Application, Second Edition is of incalculable value to professionals, academics, and users of all aspects of image analysis in biology and other areas of science.
Book Synopsis Deep Learning in Medical Image Analysis by : Gobert Lee
Download or read book Deep Learning in Medical Image Analysis written by Gobert Lee and published by Springer Nature. This book was released on 2020-02-06 with total page 184 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents cutting-edge research and applications of deep learning in a broad range of medical imaging scenarios, such as computer-aided diagnosis, image segmentation, tissue recognition and classification, and other areas of medical and healthcare problems. Each of its chapters covers a topic in depth, ranging from medical image synthesis and techniques for muskuloskeletal analysis to diagnostic tools for breast lesions on digital mammograms and glaucoma on retinal fundus images. It also provides an overview of deep learning in medical image analysis and highlights issues and challenges encountered by researchers and clinicians, surveying and discussing practical approaches in general and in the context of specific problems. Academics, clinical and industry researchers, as well as young researchers and graduate students in medical imaging, computer-aided-diagnosis, biomedical engineering and computer vision will find this book a great reference and very useful learning resource.
Book Synopsis Image Analysis in Biology by : Donat P. Hader
Download or read book Image Analysis in Biology written by Donat P. Hader and published by CRC Press. This book was released on 1992 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: Methods of image analysis. Microscopy and ultramicroscopy. Movement analysis.
Book Synopsis Quantitative Imaging in Cell Biology by :
Download or read book Quantitative Imaging in Cell Biology written by and published by Academic Press. This book was released on 2014-06-25 with total page 609 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new volume, number 123, of Methods in Cell Biology looks at methods for quantitative imaging in cell biology. It covers both theoretical and practical aspects of using optical fluorescence microscopy and image analysis techniques for quantitative applications. The introductory chapters cover fundamental concepts and techniques important for obtaining accurate and precise quantitative data from imaging systems. These chapters address how choice of microscope, fluorophores, and digital detector impact the quality of quantitative data, and include step-by-step protocols for capturing and analyzing quantitative images. Common quantitative applications, including co-localization, ratiometric imaging, and counting molecules, are covered in detail. Practical chapters cover topics critical to getting the most out of your imaging system, from microscope maintenance to creating standardized samples for measuring resolution. Later chapters cover recent advances in quantitative imaging techniques, including super-resolution and light sheet microscopy. With cutting-edge material, this comprehensive collection is intended to guide researchers for years to come. Covers sections on model systems and functional studies, imaging-based approaches and emerging studies Chapters are written by experts in the field Cutting-edge material
Book Synopsis Image Processing with MATLAB by : Omer Demirkaya
Download or read book Image Processing with MATLAB written by Omer Demirkaya and published by CRC Press. This book was released on 2008-12-22 with total page 446 pages. Available in PDF, EPUB and Kindle. Book excerpt: Image Processing with MATLAB: Applications in Medicine and Biology explains complex, theory-laden topics in image processing through examples and MATLAB algorithms. It describes classical as well emerging areas in image processing and analysis. Providing many unique MATLAB codes and functions throughout, the book covers the theory of probability an
Book Synopsis Imaging Cellular and Molecular Biological Functions by : Spencer L. Shorte
Download or read book Imaging Cellular and Molecular Biological Functions written by Spencer L. Shorte and published by Springer Science & Business Media. This book was released on 2007-09-12 with total page 457 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book offers a comprehensive selection of essays by leading experts, which covers all aspects of modern imaging, from its application and up-scaling to its development. The chapter content ranges from the basics to the most complex overview of method and protocols. There is ample practical and detailed "how-to" content on important, but rarely addressed topics. This first edition features all-colour-plate chapters, licensed software and a unique, continuously updated website forum.
Book Synopsis Image Analysis for the Biological Sciences by : C. A. Glasbey
Download or read book Image Analysis for the Biological Sciences written by C. A. Glasbey and published by . This book was released on 1995-08-08 with total page 248 pages. Available in PDF, EPUB and Kindle. Book excerpt: Covering the basics of quantitative image analysis - the extraction of information from data in the form of pictures - this study places special emphasis on methods relevant to environmental scientists. Practical examples from various fields are introduced to demonstrate applications.
Book Synopsis Microscopic Image Analysis for Life Science Applications by : Jens Rittscher (ed)
Download or read book Microscopic Image Analysis for Life Science Applications written by Jens Rittscher (ed) and published by Artech House Publishers. This book was released on 2008 with total page 489 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bridging the gap between biomedical imaging and the bioscience community, this text provides a detailed understanding of imaging platforms, fluorescence imaging, and fundamental image processing algorithms. The CD-ROM contains full-color images, movies, and other supplements.
Book Synopsis Advanced Imaging in Biology and Medicine by : Ch.W. Sensen
Download or read book Advanced Imaging in Biology and Medicine written by Ch.W. Sensen and published by Springer Science & Business Media. This book was released on 2008-12-03 with total page 447 pages. Available in PDF, EPUB and Kindle. Book excerpt: A picture says more than a thousand words. This is something that we all know to be true. Imaging has been important since the early days of medicine and bi- ogy, as seen in the anatomical studies of Leonardo Da Vinci or Andreas Vesalius. More than 100 years ago, the ?rst noninvasive imaging technologies, such as K- rad Roentgen’s X-ray technology,were applied to the medical ?eld—and while still crude—revolutionized medical diagnosis. Today, every patient will be exposed to some kind of advanced imaging technology such as medical resonance imaging, computed tomography or four-dimensional ultrasound during their lifetime. Many diseases, such as brain tumors, are initially diagnosed solely by imaging, and most of the surgical planning relies on the patient imagery. 4D ultrasound is available to expecting parents who wish to create unique early memories of the new baby, and it may soon be used for the morphometric diagnosis of malformations that may one day be treatable—inutero! Light and electron microscopy are unequal brethren, which have contributed to most of our knowledge about the existence and organization of cells, tissues and microorganisms. Every student of biology or medicine is introduced to the fascinating images of the microcosm. New advances have converted these im- ing technologies, which were considered by many to be antiquated, into powerful tools for research in systems biology and related ?elds.
Book Synopsis Medical Image Analysis by : Alejandro Frangi
Download or read book Medical Image Analysis written by Alejandro Frangi and published by Academic Press. This book was released on 2023-09-20 with total page 700 pages. Available in PDF, EPUB and Kindle. Book excerpt: Medical Image Analysis presents practical knowledge on medical image computing and analysis as written by top educators and experts. This text is a modern, practical, self-contained reference that conveys a mix of fundamental methodological concepts within different medical domains. Sections cover core representations and properties of digital images and image enhancement techniques, advanced image computing methods (including segmentation, registration, motion and shape analysis), machine learning, how medical image computing (MIC) is used in clinical and medical research, and how to identify alternative strategies and employ software tools to solve typical problems in MIC. Provides an authoritative description of key concepts and methods Includes tutorial-based sections that clearly explain principles and their application to different medical domains Presents a representative selection of topics to match a modern and relevant approach to medical image computing
Book Synopsis Plant Image Analysis by : S Dutta Gupta
Download or read book Plant Image Analysis written by S Dutta Gupta and published by CRC Press. This book was released on 2014-09-17 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: The application of imaging techniques in plant and agricultural sciences had previously been confined to images obtained through remote sensing techniques. Technological advancements now allow image analysis for the nondestructive and objective evaluation of biological objects. This has opened a new window in the field of plant science. Plant Image
Book Synopsis Biomedical Image Analysis by : Rangaraj M. Rangayyan
Download or read book Biomedical Image Analysis written by Rangaraj M. Rangayyan and published by CRC Press. This book was released on 2004-12-30 with total page 1312 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computers have become an integral part of medical imaging systems and are used for everything from data acquisition and image generation to image display and analysis. As the scope and complexity of imaging technology steadily increase, more advanced techniques are required to solve the emerging challenges. Biomedical Image Analysis demonstr
Book Synopsis Handbook of Biomedical Image Analysis by : David Wilson
Download or read book Handbook of Biomedical Image Analysis written by David Wilson and published by Springer Science & Business Media. This book was released on 2007-04-25 with total page 583 pages. Available in PDF, EPUB and Kindle. Book excerpt: Our goal is to develop automated methods for the segmentation of thr- dimensional biomedical images. Here, we describe the segmentation of c- focal microscopy images of bee brains (20 individuals) by registration to one or several atlas images. Registration is performed by a highly parallel imp- mentation of an entropy-based nonrigid registration algorithm using B-spline transformations. We present and evaluate different methods to solve the cor- spondence problem in atlas based registration. An image can be segmented by registering it to an individual atlas, an average atlas, or multiple atlases. When registering to multiple atlases, combining the individual segmentations into a ?nalsegmentationcanbeachievedbyatlasselection,ormulticlassi?erdecision fusion. Wedescribeallthesemethodsandevaluatethesegmentationaccuracies that they achieve by performing experiments with electronic phantoms as well as by comparing their outputs to a manual gold standard. The present work is focused on the mathematical and computational t- ory behind a technique for deformable image registration termed Hyperelastic Warping, and demonstration of the technique via applications in image regist- tion and strain measurement. The approach combines well-established prin- ples of nonlinear continuum mechanics with forces derived directly from thr- dimensional image data to achieve registration. The general approach does not require the de?nition of landmarks, ?ducials, or surfaces, although it can - commodate these if available. Representative problems demonstrate the robust and ?exible nature of the approach. Three-dimensional registration methods are introduced for registering MRI volumes of the pelvis and prostate. The chapter ?rst reviews the applications, xi xii Preface challenges, and previous methods of image registration in the prostate.
Book Synopsis Microarray Image Analysis by : Karl Fraser
Download or read book Microarray Image Analysis written by Karl Fraser and published by CRC Press. This book was released on 2010-01-25 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: To harness the high-throughput potential of DNA microarray technology, it is crucial that the analysis stages of the process are decoupled from the requirements of operator assistance. Microarray Image Analysis: An Algorithmic Approach presents an automatic system for microarray image processing to make this decoupling a reality. The proposed syste
Book Synopsis Medical Image Processing by : Geoff Dougherty
Download or read book Medical Image Processing written by Geoff Dougherty and published by Springer Science & Business Media. This book was released on 2011-07-25 with total page 388 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book is designed for end users in the field of digital imaging, who wish to update their skills and understanding with the latest techniques in image analysis. The book emphasizes the conceptual framework of image analysis and the effective use of image processing tools. It uses applications in a variety of fields to demonstrate and consolidate both specific and general concepts, and to build intuition, insight and understanding. Although the chapters are essentially self-contained they reference other chapters to form an integrated whole. Each chapter employs a pedagogical approach to ensure conceptual learning before introducing specific techniques and “tricks of the trade”. The book concentrates on a number of current research applications, and will present a detailed approach to each while emphasizing the applicability of techniques to other problems. The field of topics is wide, ranging from compressive (non-uniform) sampling in MRI, through automated retinal vessel analysis to 3-D ultrasound imaging and more. The book is amply illustrated with figures and applicable medical images. The reader will learn the techniques which experts in the field are currently employing and testing to solve particular research problems, and how they may be applied to other problems.
Book Synopsis Front-End Vision and Multi-Scale Image Analysis by : Bart M. Haar Romeny
Download or read book Front-End Vision and Multi-Scale Image Analysis written by Bart M. Haar Romeny and published by Springer Science & Business Media. This book was released on 2008-10-24 with total page 470 pages. Available in PDF, EPUB and Kindle. Book excerpt: Many approaches have been proposed to solve the problem of finding the optic flow field of an image sequence. Three major classes of optic flow computation techniques can discriminated (see for a good overview Beauchemin and Barron IBeauchemin19951): gradient based (or differential) methods; phase based (or frequency domain) methods; correlation based (or area) methods; feature point (or sparse data) tracking methods; In this chapter we compute the optic flow as a dense optic flow field with a multi scale differential method. The method, originally proposed by Florack and Nielsen [Florack1998a] is known as the Multiscale Optic Flow Constrain Equation (MOFCE). This is a scale space version of the well known computer vision implementation of the optic flow constraint equation, as originally proposed by Horn and Schunck [Horn1981]. This scale space variation, as usual, consists of the introduction of the aperture of the observation in the process. The application to stereo has been described by Maas et al. [Maas 1995a, Maas 1996a]. Of course, difficulties arise when structure emerges or disappears, such as with occlusion, cloud formation etc. Then knowledge is needed about the processes and objects involved. In this chapter we focus on the scale space approach to the local measurement of optic flow, as we may expect the visual front end to do. 17. 2 Motion detection with pairs of receptive fields As a biologically motivated start, we begin with discussing some neurophysiological findings in the visual system with respect to motion detection.
