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Identification Of Genomic Regions Of Sorghum Bicolor L Moench Linked To Biofuel Related Traits In Grain X Sweet Sorghum Recombinant Inbred Lines
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Book Synopsis Identification of Genomic Regions of Sorghum Bicolor (L.) Moench Linked to Biofuel-related Traits in Grain X Sweet Sorghum Recombinant Inbred Lines by : Amukelani Lacrecia Shiringani
Download or read book Identification of Genomic Regions of Sorghum Bicolor (L.) Moench Linked to Biofuel-related Traits in Grain X Sweet Sorghum Recombinant Inbred Lines written by Amukelani Lacrecia Shiringani and published by . This book was released on 2009 with total page 206 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Genetics, Genomics and Breeding of Sorghum by : Yi-Hong Wang
Download or read book Genetics, Genomics and Breeding of Sorghum written by Yi-Hong Wang and published by CRC Press. This book was released on 2014-07-08 with total page 368 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sorghum is one of the hardiest crop plants in modern agriculture and also one of the most versatile. Its seeds provide calorie for food and feed, stalks for building and industrial materials and its juice for syrup. This book provides an in-depth review of the cutting-edge knowledge in sorghum genetics and its applications in sorghum breeding. Each chapter is authored by specialists in their fields to report the latest trends and findings. The book showcases the definitive value of sorghum as a model system to study the genetic basis of crop productivity and stress tolerance and will provide a foundation for future studies in sorghum genetics, genomics, and breeding.
Book Synopsis Quantitative Trait Loci Affecting the Agronomic Performance of a Sorghum Bicolor (L.) Moench Recombinant Inbred Restorer Line Population by : Jorge Luis Moran Maradiaga
Download or read book Quantitative Trait Loci Affecting the Agronomic Performance of a Sorghum Bicolor (L.) Moench Recombinant Inbred Restorer Line Population written by Jorge Luis Moran Maradiaga and published by . This book was released on 2003 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Lately the rate of genetic gain in most agronomic crop species has been reduced due to several factors that limit breeding efficiency and genetic gain. New genetic tools and more powerful statistical analyses provide an alternative approach to enhance genetic improvements through the identification of molecular markers linked to genomic regions or QTLs controlling quantitative traits. The main objective of this research was to identify genomic regions associated with enhanced agronomic performance in lines per se and hybrid combination in Sorghum bicolor (L.) Moench. A population composed of 187 F5:6 recombinant inbred lines (RIL) was derived from the cross of restorer lines RTx430 and RTx7000. Also, a testcross hybrid population (TCH) was developed by using each RIL as a pollinator onto ATx2752. A linkage map was constructed using 174 marker loci generated from AFLP and SSR primer combinations. These markers were assigned to 12 different linkage groups. The linkage map covers 1573 cM with marker loci spaced at an averaged 9.04 cM. In this study, 89 QTL that control variation in seven different morphological traits were identified in the recombinant inbred line population, while in the testcross hybrid population, 79 QTL were identified. These traits included grain yield, plant height, days to mid-anthesis, panicle number, panicle length, panicle exsertion and panicle weight. These putative QTL explained from 4 to 42% of the phenotypic variation observed for each trait. Many of the QTL were not consistent across populations and across environments. Nevertheless, a few key QTL were identified and the source of the positive additive genetics isolated. RTx7000 was consistently associated with better agronomic performance in RIL, while in testcrosses, RTx430 was. Some genomic regions from RTx7000 may be utilized to improve RTx430 as a line per se. However, it is very unlikely that such regions will have a positive effect on the combining ability of RTx430 since testcross results did not reveal any transgressive segregants from the RIL population.
Book Synopsis QTLs for Energy Related Traits in a Sweet X Grain RIL Sorghum [sorghum Bicolor (l.) Moench] Population by : Terry Felderhoff
Download or read book QTLs for Energy Related Traits in a Sweet X Grain RIL Sorghum [sorghum Bicolor (l.) Moench] Population written by Terry Felderhoff and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent initiatives for biofuel production have increased research and development of sweet sorghum. Currently, the initial major limitation to integrating sweet sorghum into existing production systems is the lack of sweet sorghum hybrids adapted to industrial production systems. Hybrid development is now underway, and the application of genetic markers can be used to define the genetic basis of sugar yield and its components, as well as reduce the time required to deliver new sweet sorghum hybrids to market. The purpose of this research was to further characterize the genetic components that influence sweet sorghum productivity, agronomics, and composition. Specifically, a grain x sweet sorghum recombinant inbred line (RIL) population developed for quantitative trait locus (QTL) analysis related to sugar production was evaluated for 24 phenotypic traits including brix, percent moisture, and biomass yield across four environments. The 185 F4 RILs were derived from the parents 'BTx3197' and 'Rio', which are pithy stalk grain and juicy stalk sweet sorghums respectively. Following screening, two genetic maps were constructed with 372 and 381 single nucleotide polymorphisms (SNPs) evaluated using an Illumina GoldenGate assay. Analysis of the data in QTL Cartographer revealed a major and previously reported QTL for soluble solids on chromosome 3, but in contrast to previous studies, this QTL co-localized with other QTLs that have a negative influence on biomass and seed production. Therefore, selection for this QTL may not be advantageous. Because only a few QTLs for percent moisture were found, the results indicated that the pithy stalk phenotype does not have a major effect on percent moisture as measured in this study. Thus, breeding for high or low moisture content will be more challenging than previously expected. The absence of dominance effects indicated that brix must be high in both parents to produce high brix in the hybrid.
Book Synopsis Genomic Mapping for Grain Yield, Stay Green, and Grain Quality Traits in Sorghum by : Sivakumar Sukumaran
Download or read book Genomic Mapping for Grain Yield, Stay Green, and Grain Quality Traits in Sorghum written by Sivakumar Sukumaran and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Knowledge of the genetic bases of grain quality traits will complement plant breeding efforts to improve the end use value of sorghum (Sorghum bicolor (L.) Moench). The objective of the first experiment was to assess marker-trait associations for 10 grain quality traits through candidate gene association mapping on a diverse panel of 300 sorghum accessions. The 10 grain quality traits were measured using the single kernel characterization system (SKCS) and near-infrared reflectance spectroscopy (NIRS). The analysis of the accessions through 1,290 genome-wide single nucleotide polymorphisms (SNPs) separated the panel into five subpopulations that corresponded to three major sorghum races (durra, kafir, and caudatum), one intermediate race (guinea-caudatum), and one working group (zerazera/caudatum). Association analysis between 333 SNPs in candidate genes/loci and grain quality traits resulted in eight significant marker-trait associations. A SNP in starch synthase IIa (SSIIa) gene was associated with kernel hardness (KH) with a likelihood ratio-based R2 (R[subscript]L[subscript]R2) value of 0.08. SNPs in starch synthase (SSIIb) gene (R[subscript]L[subscript]R2 = 0.10) and loci pSB1120 (R[subscript]L[subscript]R2 = 0.09) was associated with starch content. Sorghum is a crop well adapted to the semi arid regions of the world and my harbor genes for drought tolerance. The objective of second experiment was to identify quantitative trait loci (QTLs) for yield potential and drought tolerance. From a cross between Tx436 (food grain type) and 00MN7645 (drought tolerant) 248 recombinant inbred lines (RILs) was developed. Multi-location trials were conducted in 8 environments to evaluate agronomic performance of the RILs under favorable and drought stress conditions. The 248 RILs and their parents were genotyped by genotyping-by-sequencing (GBS). A subset of 800 SNPs was used for linkage map construction and QTL detection. Composite interval mapping identified a major QTLs for grain yield in chromosome 8 and QTL for flowering time in chromosome 9 under favorable conditions. Three major QTLs were detected for grain yield in chromosomes 1, 6, and 8 and two flowering time QTLs on chromosome 1 under drought conditions. Six QTLs were identified for stay green: two on chromosome 4; one each on chromosome 5, 6, 7, and 10 under drought conditions.
Book Synopsis Sorghum Molecular Breeding by : R. Madhusudhana
Download or read book Sorghum Molecular Breeding written by R. Madhusudhana and published by Springer. This book was released on 2015-08-20 with total page 231 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an up-to-date overview of international research work on sorghum. Its comprehensive coverage of our current understanding of transgenic development in sorghum and the strategies that are being applied in molecular breeding make this book unique. Important areas such as genetic diversity, QTL mapping, heterosis prediction, genomic and bioinformatics resources, post-genome sequencing developments, molecular markers development using bioinformatics tools, genetic transformation and transgenic research are also addressed. The availability of the genome sequence along with other recent developments in sequencing and genotyping technologies has resulted in considerable advances in the area of sorghum genomics. These in turn have led to the generation of a large number of DNA-based markers and resulted in the identification and fine mapping of QTL associated with grain yield, its component traits, biotic and abiotic stress tolerance as well as grain quality traits in sorghum. Though a large volume of information has accumulated over the years, especially following the sequencing of the sorghum genome, until now it was not available in a single reference resource. This book fills that gap by documenting advances in the genomics and transgenic research in sorghum and presenting critical reviews and future prospects. “Sorghum Molecular Breeding” is an essential guide for students, researchers and managers who are involved in the area of molecular breeding and transgenic research in sorghum and plant biologists in general.
Book Synopsis A General Overview of Sweet Sorghum Genomics by : Didiana Galvez-Lopez
Download or read book A General Overview of Sweet Sorghum Genomics written by Didiana Galvez-Lopez and published by . This book was released on 2020 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sorghum is one of the main cereal crops, its consumption is large, since it provides grain, fiber and biofuel. Likewise, its genome, with only 10 diploid chromosomes, makes it an attractive model for research and genetic improvement. Sorghum is the most studied C4 plant of its genus; several lines have been developed under three main characteristics: grain, forage and sugar biomass. Compared to other crops, sweet sorghum possesses high levels of highly fermentable sugars in the stem. Also, it has the ability of producing high production yields in marginal lands. These characteristics make it and attractive crop for the generation of biofuels. Molecular markers associated to several resistances and tolerances to biotic and abiotic factors have been described in literature. These allow the development of high-density linkage maps, which, along with the rising availability of sorghum genomes, will accelerate the identification of markers and the integration of the complete genome sequence. This will facilitate the selection of traits related to biofuels and the marker-assisted genetic improvement. Most of the information presented in this review is focused in Sorghum bicolor (L.) Moench. However, from the bioenergetics perspective, it is limited to sweet sorghum, which represents a promising opportunity for further studies.
Book Synopsis The Sorghum Genome by : Sujay Rakshit
Download or read book The Sorghum Genome written by Sujay Rakshit and published by Springer. This book was released on 2017-01-18 with total page 289 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides insights into the current state of sorghum genomics. It particularly focuses on the tools and strategies employed in genome sequencing and analysis, public and private genomic resources and how all this information is leading to direct outcomes for plant breeders. The advent of affordable whole genome sequencing in combination with existing cereal functional genomics data has enabled the leveraging of the significant novel diversity available in sorghum, the genome of which was fully sequenced in 2009, providing an unmatched resource for the genetic improvement of sorghum and other grass species. Cultivated grain sorghum is a food and feed cereal crop adapted to hot and dry climates, and is a staple for 500 million of the world’s poorest people. Globally, sorghum is also an important source of animal feed and forage, an emerging biofuel crop and model for C4 grasses, particularly genetically complex sugarcane.
Book Synopsis Population Genomics: Crop Plants by : Om P. Rajora
Download or read book Population Genomics: Crop Plants written by Om P. Rajora and published by Springer Nature. This book was released on with total page 947 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Genetic Analysis of Stem Composition Variation in Sorghum Bicolor by : Joseph Evans
Download or read book Genetic Analysis of Stem Composition Variation in Sorghum Bicolor written by Joseph Evans and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Sorghum (Sorghum bicolor [L.] Moench) is the world's fifth most economically important cereal crop, grown worldwide as a source of food for both humans and livestock. Sorghum is a C4 grass that is well adapted to hot and arid climes and is popular for cultivation on lands of marginal quality. Recent interest in development of biofuels from lignocellulosic biomass has drawn attention to sorghum, which can be cultivated in areas not suitable for more traditional crops, and is capable of generating plant biomass in excess of 40 tons per acre. While the quantity of biomass and low water consumption make sorghum a viable candidate for biofuels growth, the biomass composition is enriched in lignin, which is problematic for enzymatic and chemical conversion techniques. The genetic basis for stem composition was analyzed in sorghum populations using a combination of genetic, genomic, and bioinformatics techniques. Utilizing acetyl bromide extraction, the variation in stem lignin content was quantified across several sorghum cultivars, confirming that lignin content varied considerably among sorghum cultivars. Previous work identifying sorghum reduced-lignin lines has involved the monolignol biosynthetic pathway; all steps in the pathway were putatively identified in the sorghum genome using sequence analysis. A bioinformatics toolkit was constructed to allow for the development of genetic markers in sorghum populations, and a database and web portal were generated to allow users to access previously developed genetic markers. Recombinant inbred lines were analyzed for stem composition using near infrared reflectance spectroscopy (NIR) and genetic maps constructed using restriction site-linked polymorphisms, revealing 34 quantitative trail loci (QTL) for stem composition variation in a BTx642 x RTx7000 population, and six QTL for stem composition variation in an SC56 x RTx7000 population. Sequencing the genome of BTx642 and RTx7000 to a depth of ~11x using Illumina sequencing revealed approximately 1.4 million single nucleotide polymorphisms (SNPs) and 1 million SNPs, respectively. These polymorphisms can be used to identify putative amino acid changes in genes within these genotypes, and can also be used for fine mapping. Plotting the density of these SNPs revealed patterns of genetic inheritance from shared ancestral lines both between the newly sequenced genotypes and relative to the reference genotype BTx623.
Book Synopsis Genetic Analysis of the 'dry' Trait, Stem Architecture and Plant Water Content Components in Sorghum by : Huizhe Jin
Download or read book Genetic Analysis of the 'dry' Trait, Stem Architecture and Plant Water Content Components in Sorghum written by Huizhe Jin and published by . This book was released on 2016 with total page 338 pages. Available in PDF, EPUB and Kindle. Book excerpt: With increasing energy demand and diminishing petroleum reserves, energy sources derived from renewable plant-based biomass are an attractive substitute for fossil fuels. Being the fifth most widely grown cereal crop in the world, sorghum is among one of the most attractive bioenergy feedstocks currently under active study. In this thesis, we provide a valuable addition to the genetic resources of sorghum by describing a recombinant inbred line (RIL) population of 161 F5 genotypes for the widest euploid cross that can be made in eusorghums, of annual S. bicolor x perennial S. propinquum. It offers advantages over early-generation populations of this cross that will shed new light on genetic, environmental, and physiological / biochemical factors that regulate plant growth and development. A combination of linkage and association genetic approaches using a S. bicolor x S. propinquum F2 population, a S. bicolor BTx623 x IS3620c RIL population, and a S. bicolor diversity panel of 354 accessions characterized at 265,487 SNPs allows us to: tentatively identity and characterize the D gene for the 0́dry' trait; and determine genomic regions corresponding to 3 stem diameter traits and 2 water content traits. We also revealed the evolutionary path of the D gene, as having evolved under balancing selection during a recent tandem expansion of the BGLU gene family in sorghum after its divergence from maize. Co-localizations of stem diameter and water content traits with a number of other bioenergy traits, including plant height, flowering time, branching, stem volume and the 0́8dry' trait, were also observed, suggesting that their inheritance may be functionally (pleiotropy) or physically (linkage disequilibrium) linked. Increasing knowledge of the genetic control of these bioenergy traits in sorghum, and in identification of corresponding genes and their functions, may lead to tools and strategies for either enhancing or suppressing these traits, supporting advances toward greater use of plant-based biomass in biofuel production.
Book Synopsis Plant Biomass Conversion by : Elizabeth E. Hood
Download or read book Plant Biomass Conversion written by Elizabeth E. Hood and published by John Wiley & Sons. This book was released on 2011-01-20 with total page 376 pages. Available in PDF, EPUB and Kindle. Book excerpt: A whole host of motivations are driving the development of the “renewables” industry— ranging from the desire to develop sustainable energy resources to the reduction of dangerous greenhouse gases that contribute to global warming. All energy utilized on the earth is ultimately derived from the sun through photosynthesis—the only truly renewable commodity. As concerns regarding increasing energy prices, global warming and renewable resources continue to grow, so has scientific discovery into agricultural biomass conversion. Plant Biomass Conversion addresses both the development of plant biomass and conversion technology, in addition to issues surrounding biomass conversion, such as the affect on water resources and soil sustainability. This book also offers a brief overview of the current status of the industry and examples of production plants being used in current biomass conversion efforts.
Book Synopsis Gene Characterization and Marker Development in Sorghum Bicolor (L.) Moench by : Sarah June Schloss
Download or read book Gene Characterization and Marker Development in Sorghum Bicolor (L.) Moench written by Sarah June Schloss and published by . This book was released on 2001 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Quantitative Genomic Analysis of Agroclimatic Traits in Sorghum by : Olalere Marcus Olatoye
Download or read book Quantitative Genomic Analysis of Agroclimatic Traits in Sorghum written by Olalere Marcus Olatoye and published by . This book was released on 2017 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Climate change has been anticipated to affect agriculture, with most the profound effect in regions where low input agriculture is being practiced. Understanding of how plants evolved in adaptation to diverse climatic conditions in the presence of local stressors (biotic and abiotic) can be beneficial for improved crop adaptation and yield to ensure food security. Great genetic diversity exists for agroclimatic adaptation in sorghum (Sorghum bicolor L. Moench) but much of it has not been characterized. Thus, limiting its utilization in crop improvement. The application of next-generation sequencing has opened the plant genome for analysis to identify patterns of genome-wide nucleotide variations underlying agroclimatic adaptation. To understand the genetic basis of adaptive traits in sorghum, the genetic architecture of sorghum inflorescence traits was characterized in the first study. Phenotypic data were obtained from multi-environment experiments and used to perform joint linkage and genome-wide association mapping. Mapping results identified previously mapped and novel genetic loci underlying inflorescence morphology in sorghum. Inflorescence traits were found to be under the control of a few large and many moderate and minor effect loci. To demonstrate how our understanding of the genetic basis of adaptive traits can facilitate genomic enabled breeding, genomic prediction analysis was performed with results showing high prediction accuracies for inflorescence traits. In the second study, the sorghum-nested association mapping (NAM) population was used to characterize the genetic architecture of leaf erectness, leaf width, and stem diameter. About 2200 recombinant inbred lines were phenotyped in multiple environments. The obtained phenotypic data was used to perform joint linkage mapping using ~93,000 markers. The proportion of phenotypic variation explained by QTL and their allele frequencies were estimated. Common and moderate effects QTL were found to underlie marker-trait associations. Furthermore, identified QTL co-localized with genes involved in both vegetative and inflorescence development. Our results provide insights into the genetic basis of leaf erectness and stem diameter in sorghum. The identified QTL will also facilitate the development of genomic-enable breeding tools for crop improvement and molecular characterization of the underlying genes Finally, in a third study, 607 Nigerian accessions were genotyped and the resulting genomic data [about 190,000 single nucleotide polymorphisms (SNPs)] was used for downstream analysis. Genome-wide scans of selection and genome-wide association studies (GWAS) were performed and alongside estimates of levels of genetic differentiation and genetic diversity. Results showed that phenotypic variation in the diverse germplasm had been shaped by local adaptation across climatic gradient and can provide plant genetic resources for crop improvement.
Book Synopsis Agronomic, Genetic and Genomic Approaches for Predicting Heterosis in Sorghum [Sorghum Bicolor (L.) Moench] by : Frank Maulana
Download or read book Agronomic, Genetic and Genomic Approaches for Predicting Heterosis in Sorghum [Sorghum Bicolor (L.) Moench] written by Frank Maulana and published by . This book was released on 2016 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The approach used to identify inbred lines that can produce superior hybrids is costly and time-consuming. It requires creation of all possible crosses and evaluation of the crosses to estimate combining abilities for the desired traits. Predicting heterosis or hybrid performance in any way possible may help to reduce the number of crosses to be made and evaluated. In this study, four sets of experiments were conducted to determine whether heterosis can be predicted based on inbred line performance, genetic distance between parents and genomic prediction model. The first experiment was aimed at assessing the levels of genetic diversity, population structure and linkage disequilibrium (LD) in 279 public sorghum inbred lines, based on 66,265 SNPs generated using the genotyping-by-sequencing (GBS) platform. The inbred lines were developed at different times over the last two decades and harbor robust diversity in pedigree and agronomic characteristics. Some of the inbreds are resistant to Acetolactate synthase (ALS) and Acetyl co-enzyme-A carboxylase (ACC) inhibitor herbicides. The mean polymorphic information content (PIC) and gene diversity across the entire inbreds were 0.35 and 0.46, respectively with non-herbicide resistant inbreds harboring more diversity than the herbicide resistant ones. The population structure analysis clustered the inbred lines into three major subgroups according to pedigree and fertility-reaction with the maintainer lines (B-lines) distinctly forming a separate cluster. Analysis of molecular variance (AMOVA) revealed more variation within subgroups than among subgroups. Substantial linkage disequilibrium (LD) was detected between the markers in the population with marked variation between chromosomes. This information may facilitate the use of the inbreds in sorghum breeding programs and provide perspectives for optimizing marker density for gene mapping and marker-assisted breeding. The second experiment, based on 102 F1 hybrids developed by intercrossing closely and distantly related inbreds, was conducted to investigate the relationship of genetic distance between parents with hybrid vigor or heterosis. The F1 hybrids alongside their parents were evaluated at two environments in a randomized complete block design with three replications. The results show that correlations of genetic distance between parents with hybrid performance and heterosis were variable and dependent on the trait. Though most were statistically non-significant and not strong to be used as predictor for heterosis, the results tend to show that certain level of genetic distance between parents is needed to capture maximum heterosis and hybrid performance. The objective of the third research study was to determine whether traits measured on parents can be used to predict hybrid performance in sorghum and to assess the combining ability of selected inbreds. Forty-six parental inbred lines and 75 F1 hybrids generated from intercrossing the inbreds were evaluated in four environments in a randomized complete block design with three replications. The average performance of the parents (mid-parent) was significantly correlated with hybrid performance for thousand kernel weight, days to flowering and plant height. Significant general (GCA) and specific (SCA) combining abilities were observed for most traits, with highly significant GCA effects observed for most traits as compared to SCA indicating that additive genetic effects are more important in affecting the inheritance of the traits measured. Results show that studying parental inbred line performance could generate important information for predicting hybrid performance in sorghum. The fourth experiment was aimed at assessing the efficacy of genomic prediction of hybrid performance in sorghum. Genomic prediction was performed with five-fold cross-validation procedure on 204 F1 hybrids developed using 102 inbred lines. A total of 66,265 SNP markers generated using genotyping-by-sequencing were used in this study. Results showed that increasing training population size increased prediction accuracies for all traits with the effect being different for different traits. Also, considering additive effects alone versus additive and dominance effects in the model showed similar trend of prediction accuracy but the full model (considering both additive and dominance effects of the markers) provided better prediction at least for some of the traits. The results suggest that genomic prediction could become an effective tool for predicting the performance of untested sorghum hybrids thus adding efficiency to hybrid selection.
Book Synopsis Physiological, Genetic and Genomic Analyses of Herbicide Resistance in Grain Sorghum (Sorghum Bicolor) by : Balaji Aravindhan Pandian
Download or read book Physiological, Genetic and Genomic Analyses of Herbicide Resistance in Grain Sorghum (Sorghum Bicolor) written by Balaji Aravindhan Pandian and published by . This book was released on 2020 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Grain sorghum [Sorghum bicolor (L.) Moench ssp. bicolor] is a versatile crop with multiple uses, including for food, feed, and fuel. Postemergence (POST) grass weed control continues to be a major challenge in grain sorghum, primarily due to a lack of herbicide options registered for POST use. The 4- hydroxyphenylpyruvate dioxygenase (HPPD)- (e.g., mesotrione or tembotrione) and acetolactate synthase (ALS)- inhibitor (e.g., chlorsulfuron) herbicides are used for POST control of a broad-spectrum of weeds including grasses in corn and wheat but not in sorghum, due to crop injury. The development of herbicide-resistant sorghum technology to facilitate broad-spectrum POST weed control can be an economical and viable solution. Previously we have identified four sorghum genotypes, two each resistant to mesotrione (G-1 and G-10), tembotrione (G-200 and G-350) and, one susceptible genotype (S-1) from the sorghum association panel. Further, we found that the genotype S-1 is highly resistant to chlorsulfuron. The objectives of this dissertation were to 1) investigate the inheritance, mechanism, and identify genetic loci conferring resistance to mesotrione and tembotrione, 2) characterize, and investigate the inheritance and mechanism of resistance to chlorsulfuron in grain sorghum. To understand the inheritance of the mesotrione and tembotrione resistance, F1 and F2 progeny were generated by performing crosses using S-1 and G-1, G-10, G-200, or G-350. The F1 and F2 progeny were evaluated for their response to various doses of mesotrione and tembotrione treatment. Likewise, chlorsulfuron dose-response experiments were conducted using S-1 along with BTx623, a susceptible check and also F1 and F2 progeny were generated by crossing S-1 and BTx623. The results of genetic analyses of the F1 and F2 progeny demonstrated that the mesotrione resistance in G-1 and G-10 is a single dominant trait, and while the tembotrione resistance in G-200 and G-350 is a partially dominant polygenic trait. Further, sequencing of HPPD gene, the molecular target of mesotrione and tembotrione in the resistant genotypes, revealed no mutations known to bestow resistance. Additionally, the role of cytochrome P450 (CYP) in metabolizing mesotrione and tembotrione, using CYP-inhibitors, malathion and piperonyl butoxide (PBO) was also assessed. The results indicated a significant reduction in biomass accumulation in sorghum plants pre-treated with malathion or PBO, suggesting the involvement of CYPs in the metabolism of mesotrione and tembotrione. Bulk segregation analysis combined with RNA-Seq (BSR-seq) was used to identify the genomic region associated with mesotrione resistance; however, the sequence analyses was unable to map the resistance gene within a smaller interval. Genotype-by-sequencing (GBS) based quantitative trait loci (QTL) mapping revealed three QTLs associated with tembotrione resistance in G-200. The results of the chlorsulfuron dose-response assay indicated that S-1 and F1 progeny were ~20-fold, more resistant to chlorsulfuron relative to BTx623. Segregation of F2 progeny into 3:1 (resistance: susceptibility), suggested that chlorsulfuron resistance in S-1 is a single dominant trait. Sequence analysis of the ALS gene, the molecular target of chlorsulfuron from S-1 revealed no mutations that confer resistance to chlorsulfuron; however, a significant reduction in biomass accumulation was found in plants pre-treated with malathion, indicating that the metabolism of chlorsulfuron contributes to resistance in S-1. Overall, the results of this dissertation provide opportunities to develop herbicide-resistant sorghum hybrids via introgression, which can help effective, POST weed management.
Book Synopsis Genetic and Phenotypic Diversity in Sorghum for Improvement as a Biofuel Feedstock by : Seth Calder Murray
Download or read book Genetic and Phenotypic Diversity in Sorghum for Improvement as a Biofuel Feedstock written by Seth Calder Murray and published by . This book was released on 2008 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
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