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Identification And Functional Dissection Of Stress Responsive Genes In Cotton
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Book Synopsis Identification and Functional Dissection of Stress-responsive Genes in Cotton by : Jia-He Wu
Download or read book Identification and Functional Dissection of Stress-responsive Genes in Cotton written by Jia-He Wu and published by Frontiers Media SA. This book was released on 2022-11-22 with total page 415 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Identification and functional analysis of differentially expressed genes in plant response to abiotic stresses by : Xuke Lu
Download or read book Identification and functional analysis of differentially expressed genes in plant response to abiotic stresses written by Xuke Lu and published by Frontiers Media SA. This book was released on 2023-08-24 with total page 333 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis The Applications of New Multi-Locus GWAS Methodologies in the Genetic Dissection of Complex Traits by : Yuan-Ming Zhang
Download or read book The Applications of New Multi-Locus GWAS Methodologies in the Genetic Dissection of Complex Traits written by Yuan-Ming Zhang and published by Frontiers Media SA. This book was released on 2019-06-19 with total page 236 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genome-Wide Association Studies (GWAS) are widely used in the genetic dissection of complex traits. Most existing methods are based on single-marker association in genome-wide scans with population structure and polygenic background controls. To control the false positive rate, the Bonferroni correction for multiple tests is frequently adopted. This stringent correction results in the exclusion of important loci, especially for GWAS in crop genetics. To address this issue, multi-locus GWAS methodologies have been recommended, i.e., FASTmrEMMA, ISIS EM-BLASSO, mrMLM, FASTmrMLM, pLARmEB, pKWmEB and FarmCPU. In this Research Topic, our purpose is to clarify some important issues in the application of multi-locus GWAS methods. Here we discuss the following subjects: First, we discuss the advantages of new multi-locus GWAS methods over the widely-used single-locus GWAS methods in the genetic dissection of complex traits, metabolites and gene expression levels. Secondly, large experiment error in the field measurement of phenotypic values for complex traits in crop genetics results in relatively large P-values in GWAS, indicating the existence of small number of significantly associated SNPs. To solve this issue, a less stringent P-value critical value is often adopted, i.e., 0.001, 0.0001 and 1/m (m is the number of markers). Although lowering the stringency with which an association is made could identify more hits, confidence in these hits would significantly drop. In this Research Topic we propose a new threshold of significant QTN (LOD=3.0 or P-value=2.0e-4) in multi-locus GWAS to balance high power and low false positive rate. Thirdly, heritability missing in GWAS is a common phenomenon, and a series of scientists have explained the reasons why the heritability is missing. In this Research Topic, we also add one additional reason and propose the joint use of several GWAS methodologies to capture more QTNs. Thus, overall estimated heritability would be increased. Finally, we discuss how to select and use these multi-locus GWAS methods.
Book Synopsis Plant Receptor-Like Kinases by : Santosh Kumar Upadhyay
Download or read book Plant Receptor-Like Kinases written by Santosh Kumar Upadhyay and published by Academic Press. This book was released on 2022-09-27 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant Receptor-like Kinases: Role in Development and Stress presents the latest research in receptor-like kinases (RLKs), a class of development and defense-response proteins in plants. As one of the largest protein families, with roles ranging from growth and development to stress response, RLKs are involved in every aspect of the plant life cycle, including growth and development, reproduction, and immunity. Development of high throughput sequencing technology has improved the identification and characterization of numerous gene families in plants in the recent years, allowing researchers to identify and characterize numerous RLK sub-families in model plant species and agro-economically important crop plants like rice, wheat, sorghum, tomatoes, and more. This book provides foundational knowledge on the classification of RLKs, their mechanism of action and their roles in the plant life cycle, as well as the most up-to-date advances in the applications of RLKs. It is an essential read for researchers interested in plant signaling and plant genomics. Presents detailed information on receptor like kinases (RLKs), including their mechanism of action and classification Analyzes numerous sub-families of RLKs and their roles in plant development and stress management Highlights the function of RLKs in plant innate immunity
Book Synopsis Plant Abiotic Stress by : Matthew A. Jenks
Download or read book Plant Abiotic Stress written by Matthew A. Jenks and published by John Wiley & Sons. This book was released on 2008-04-15 with total page 288 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the past decade, our understanding of plant adaptation to environmental stress has grown considerably. This book focuses on stress caused by the inanimate components of the environment associated with climatic, edaphic and physiographic factors that substantially limit plant growth and survival. Categorically these are abiotic stresses, which include drought, salinity, non-optimal temperatures and poor soil nutrition. Another stress, herbicides, is covered in this book to highlight how plants are impacted by abiotic stress originating from anthropogenic sources. The book also addresses the high degree to which plant responses to quite diverse forms of environmental stress are interconnected, describing the ways in which the plant utilizes and integrates many common signals and subsequent pathways to cope with less favorable conditions. The book is directed at researchers and professionals in plant physiology, cell biology and molecular biology, in both the academic and industrial sectors.
Book Synopsis Genetic advancements for improving the plant tolerance to biotic and abiotic stresses by : Krishnanand P. Kulkarni
Download or read book Genetic advancements for improving the plant tolerance to biotic and abiotic stresses written by Krishnanand P. Kulkarni and published by Frontiers Media SA. This book was released on 2024-05-31 with total page 204 pages. Available in PDF, EPUB and Kindle. Book excerpt: Crop plants are constantly exposed to multiple abiotic (such as drought, salinity, cold, flooding, heavy metal, and heat) and/or biotic (bacterial/fungal/viral) stress factors that hinder their growth and development, subsequently leading to decreases in quality and yield. During the last two decades, many classical genetic and breeding approaches have been used to develop stress-tolerant and climate-adaptable plants that can provide a better yield to meet food demands. Climate change poses a major risk to food security as the world faces frequent floods, droughts, heat waves, and the emergence of new invasive pests and diseases. Novel genomic and genetic approaches look promising to improve plant resilience under stress conditions and achieve sustainable crop improvements. Recent advances in sequencing technologies have facilitated the generation of a plethora of genomic resources in a variety of crop and plant species. With the increased availability of genomic and transcriptomic data, an increasing number of quantitative trait loci and candidate genes are being identified for their application in improving plant tolerance to abiotic and biotic stresses. New approaches such as genomic selection and genomic-assisted breeding have been utilized to develop stress-tolerant cultivars in a variety of plant species. Furthermore, transgenics and rapidly evolving CRISPR technology offer great potential for plant improvement. This Research Topic aims to provide insights into the molecular and genetic factors involved in imparting abiotic and biotic stress tolerance in plants and their application in enhancing plant adaptation to these stress conditions. To review the progress in this research category, we invite manuscripts related to the plant responses to abiotic/biotic stresses and trait improvement through genomic selection, and transgenic or gene-editing approaches. Studies including physiological, biochemical, and molecular genetic analyses revealing the mechanisms involved in plant response to abiotic/biotic stresses are welcome. Topic editor Dr. Balaji Aravindhan Pandian is employed by Enko Chem Inc. All other Topic Editors declare no competing interests with regard to the Research Topic subject.
Book Synopsis Cotton Breeding and Biotechnology by : Zulqurnain Khan
Download or read book Cotton Breeding and Biotechnology written by Zulqurnain Khan and published by CRC Press. This book was released on 2022-03-14 with total page 533 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cotton Breeding and Biotechnology presents information on one of the most economically important crops of the world, cotton. This book contains chapters on the history of cotton; breeding approaches; technologies for increasing germination, crop growth and yield; and fiber quality issues. It emphasizes sustainable development in the cotton industry analysing the progress of breeding technologies under environmental adversity. The book explores the national and global status of cotton crop, including cotton production, possible impacts of climate change, and the vulnerability of cotton to pest infestations and disease attacks. Features Focuses on cotton breeding and biotechnology Proposes ideas, data, and strategies to mount breeding programs for enhancing cotton production Details strategies for cotton quality improvement against abiotic and biotic stresses Emphasizes the revival of cotton in Pakistan and South Asian region This book is useful to researchers, cotton breeders and growers, farmers, and the agriculture industry.
Book Synopsis Marker-Assisted Selection (MAS) in Crop Plants, volume II by : Ting Peng
Download or read book Marker-Assisted Selection (MAS) in Crop Plants, volume II written by Ting Peng and published by Frontiers Media SA. This book was released on 2024-06-13 with total page 307 pages. Available in PDF, EPUB and Kindle. Book excerpt: Global climate change, reductions in arable land, and food security demands that plant breeding will continue to play an imperative role in feeding 9 billion people sustainably by 2050. In order to face this challenge, modern plant breeding will necessitate the adoption of new technologies and practices to boost production of cultivated plants by capturing or generating more favorable genetic diversity. In crop plants, the majority of agronomically important traits are quantitatively inherited, controlled by multiple genes each with a small effect (quantitative trait loci, QTLs). The most common approach to pre-breeding is to use genetic mapping to identify QTLs for key phenotypic variation followed by introgressing those QTLs into the elite gene pool with marker-assisted selection (MAS), which can enhance the selection criteria of phenotypes comparing to conventional breeding with the selection of genes. As the cost of genotyping continues to decline, the use of genotyping-by-sequencing (GBS) technologies or whole genome re-sequencing, coupled with the release of the genome sequences of plant species have permitted the development of dense arrays of single nucleotide polymorphisms (SNPs) covering the entire genome, which have in turn paved the way to genome-wide association studies (GWAS). Meanwhile, fine mapping guided by genome sequences of many plant species have facilitated the exploration of functional genes; in addition, pan-genomes constructed from various available resources such as the reference sequence and its variants, raw reads and haplotype reference panels provide a new perspective on QTL locations and potential molecular targets for plant breeding. Similarly, new approaches to marker-trait association analyses such as quantitative trait locus sequencing (QTL-seq) and quantitative trait gene sequencing (QTG-seq) that are based on bulked-segregant analysis (BSA) and whole-genome resequencing will help accelerate QTL fine-mapping and identification of the causal genes. In conclusion, the tools and strategies for MAS in modern plant breeding have been expanding in recent years. By embracing a broad array of conventional and new molecular techniques, modern plant breeding has a bright future in delivering new crop cultivars to keep our food, fiber and biobased economy diverse and safe.
Book Synopsis Mapping Abiotic Stress-Tolerance Genes in Plants by : Richard R.-C. Wang
Download or read book Mapping Abiotic Stress-Tolerance Genes in Plants written by Richard R.-C. Wang and published by MDPI. This book was released on 2020-12-02 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the latest research results on plant genes controlling tolerance to abiotic stresses including heat, cold, drought, salt, nitrogen, metals, irradiation, and exogenous phytohormones. The authors report the expression profiles, function/roles in physiological pathways, and chromosomal locations of tolerance genes. The studies involve cytogenetics, genomics, proteomics, and bioinformatics. The information is critical for food security in an environment experiencing global climate changes. Therefore, this book provides a useful reference to students and professionals in plant sciences encompassing genetics, physiology, chemistry, and breeding.
Book Synopsis Applied Plant Genomics and Biotechnology by : Palmiro Poltronieri
Download or read book Applied Plant Genomics and Biotechnology written by Palmiro Poltronieri and published by Woodhead Publishing. This book was released on 2015-01-27 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Applied plant genomics and biotechnology reviews the recent advancements in the post-genomic era, discussing how different varieties respond to abiotic and biotic stresses, investigating epigenetic modifications and epigenetic memory through analysis of DNA methylation states, applicative uses of RNA silencing and RNA interference in plant physiology and in experimental transgenics, and plants modified to produce high-value pharmaceutical proteins. The book provides an overview of research advances in application of RNA silencing and RNA interference, through Virus-based transient gene expression systems, Virus induced gene complementation (VIGC), Virus induced gene silencing (Sir VIGS, Mr VIGS) Virus-based microRNA silencing (VbMS) and Virus-based RNA mobility assays (VRMA); RNA based vaccines and expression of virus proteins or RNA, and virus-like particles in plants, the potential of virus vaccines and therapeutics, and exploring plants as factories for useful products and pharmaceuticals are topics wholly deepened. The book reviews and discuss Plant Functional Genomic studies discussing the technologies supporting the genetic improvement of plants and the production of plant varieties more resistant to biotic and abiotic stresses. Several important crops are analysed providing a glimpse on the most up-to-date methods and topics of investigation. The book presents a review on current state of GMO, the cisgenesis-derived plants and novel plant products devoid of transgene elements, discuss their regulation and the production of desired traits such as resistance to viruses and disease also in fruit trees and wood trees with long vegetative periods. Several chapters cover aspects of plant physiology related to plant improvement: cytokinin metabolism and hormone signaling pathways are discussed in barley; PARP-domain proteins involved in Stress-Induced Morphogenetic Response, regulation of NAD signaling and ROS dependent synthesis of anthocyanins. Apple allergen isoforms and the various content in different varieties are discussed and approaches to reduce their presence. Euphorbiaceae, castor bean, cassava and Jathropa are discussed at genomic structure, their diseases and viruses, and methods of transformation. Rice genomics and agricultural traits are discussed, and biotechnology for engineering and improve rice varieties. Mango topics are presented with an overview of molecular methods for variety differentiation, and aspects of fruit improvement by traditional and biotechnology methods. Oilseed rape is presented, discussing the genetic diversity, quality traits, genetic maps, genomic selection and comparative genomics for improvement of varieties. Tomato studies are presented, with an overview on the knowledge of the regulatory networks involved in flowering, methods applied to study the tomato genome-wide DNA methylation, its regulation by small RNAs, microRNA-dependent control of transcription factors expression, the development and ripening processes in tomato, genomic studies and fruit modelling to establish fleshy fruit traits of interest; the gene reprogramming during fruit ripening, and the ethylene dependent and independent DNA methylation changes. provides an overview on the ongoing projects and activities in the field of applied biotechnology includes examples of different crops and applications to be exploited reviews and discusses Plant Functional Genomic studies and the future developments in the field explores the new technologies supporting the genetic improvement of plants
Book Synopsis Heat Stress: Response, Mitigation, and Tolerance in Plants by : Ranjeet Ranjan Kumar
Download or read book Heat Stress: Response, Mitigation, and Tolerance in Plants written by Ranjeet Ranjan Kumar and published by Frontiers Media SA. This book was released on 2023-09-06 with total page 183 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Plant OMICS and Crop Breeding by : Sajad Majeed Zargar
Download or read book Plant OMICS and Crop Breeding written by Sajad Majeed Zargar and published by CRC Press. This book was released on 2017-05-08 with total page 314 pages. Available in PDF, EPUB and Kindle. Book excerpt: Due to the advent of state-of-the-art technologies in the field of biotechnology, much progress has been achieved since the last decade. OMICS technologies are being extensively used to address various issues pertaining to agriculture. Recent advances in genomics, transcriptomics, proteomics, and metabolomics techniques have revolutionized the understanding of genetic response of plants to various biotic and abiotic stresses. Strategic application of this revolutionary technology will eventually lead towards attaining sustainability in agriculture. This new book, Plant OMICS and Crop Breeding, addresses this important issue.
Book Synopsis Plant Stress Physiology, 2nd Edition by : Sergey Shabala
Download or read book Plant Stress Physiology, 2nd Edition written by Sergey Shabala and published by CABI. This book was released on 2017-01-20 with total page 378 pages. Available in PDF, EPUB and Kindle. Book excerpt: Completely updated from the successful first edition, this book provides a timely update on the recent progress in our knowledge of all aspects of plant perception, signalling and adaptation to a variety of environmental stresses. It covers in detail areas such as drought, salinity, waterlogging, oxidative stress, pathogens, and extremes of temperature and pH. This second edition presents detailed and up-to-date research on plant responses to a wide range of stresses Includes new full-colour figures to help illustrate the principles outlined in the text Is written in a clear and accessible format, with descriptive abstracts for each chapter. Written by an international team of experts, this book provides researchers with a better understanding of the major physiological and molecular mechanisms facilitating plant tolerance to adverse environmental factors. This new edition of Plant Stress Physiology is an essential resource for researchers and students of ecology, plant biology, agriculture, agronomy and plant breeding.
Download or read book Cumulated Index Medicus written by and published by . This book was released on 1995 with total page 1436 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Virus-Induced Gene Silencing by : Annette Becker
Download or read book Virus-Induced Gene Silencing written by Annette Becker and published by Humana Press. This book was released on 2013-02-06 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plants are amazing organisms to study, some are important sources for pharmaceuticals, and others can help to elucidate molecular mechanisms required for a plant’s development and its interactions with the biotic or abiotic environment. Functional genomics is vastly lagging behind the speed of genome sequencing as high-throughput gene function assays are difficult to design, specifically for non-model plants. Bioinformatics tools are useful for gene identification and annotation but are of limited value for predictions concerning gene functions as gene functions are uncovered best by experimental approaches. Virus-Induced-Gene-Silencing (VIGS) is an easy to use, fast, and reliable method to achieve down regulation of target gene expression. Virus-Induced Gene Silencing: Methods and Protocols provides detailed protocols for VIGS experiments in several plant species including model and non-model plants. Also included in this book are recently developed protocols for VIGS-derived microRNA production in the plant or protein over expression, as well as chapters devoted to summarizing the molecular mechanisms of VIGS action and the vector systems developed so far. Written in the successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Virus-Induced Gene Silencing: Methods and Protocols serves as a valuable resource for researchers from diverse fields of plant biology interested in experimental approaches to analyzing gene functions.
Book Synopsis Marker-assisted selection (MAS) in crop plants by : Baohua Wang
Download or read book Marker-assisted selection (MAS) in crop plants written by Baohua Wang and published by Frontiers Media SA. This book was released on 2023-03-16 with total page 629 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Advances in breeding for quantitative disease resistance by : Valerio Hoyos-Villegas
Download or read book Advances in breeding for quantitative disease resistance written by Valerio Hoyos-Villegas and published by Frontiers Media SA. This book was released on 2023-02-28 with total page 394 pages. Available in PDF, EPUB and Kindle. Book excerpt:
