Grid Computing In Life Sciences

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Grid Computing in Life Sciences

Author : Tin Wee Tan
Publisher : World Scientific
ISBN 13 : 9812772502
Total Pages : 246 pages
Book Rating : 4.8/5 (127 download)

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Book Synopsis Grid Computing in Life Sciences by : Tin Wee Tan

Download or read book Grid Computing in Life Sciences written by Tin Wee Tan and published by World Scientific. This book was released on 2006 with total page 246 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the second volume in the series of proceedings from the International Workshop on Life Science Grid. It represents the few, if not the only, dedicated proceedings volumes that gathers together the presentations of leaders in the emerging sub-discipline of grid computing for the life sciences. The volume covers the latest developments, trends and trajectories in life science grid computing from top names in bioinformatics and computational biology: A Konagaya; J C Wooley of the National Science Foundation (NSF) and DoE thought leader in supercomputing and life science computing, and one of the key people in the NSF CIBIO initiative; P Arzberger of PRAGMA fame; and R Sinnott of UK e-Science. Sample Chapter(s). Chapter 1: The Grid as a ba for Biomedical Knowledge Creation (155 KB). Contents: The Grid as a OC BaOCO for Biomedical Knowledge Creation (A Konagaya); Cyberinfrastructure for the Biological Sciences (CIBIO) (J C Wooley); Controlling the Chaos: Developing Post-Genomic Grid Infrastructures (R Sinnott & M Bayer); A Framework for Biological Analysis on the Grid (T Okumura et al.); An Architectural Design of Open Genome Services (R Umetsu et al.); Proteome Analysis Using iGAP in Gfarm (W W Li et al.); Large-Scale Simulation and Prediction of HLA-Epitope Complex Structures (A E H Png et al.); Process Integration for Bio-Manufacturing Grid (Z Q Shen et al.); and other papers. Readership: Practitioners of grid computing as applied to the life sciences, life scientists and biologists working on large computational solutions that require grid computing."

Grid Computing in Life Science

Author : Akihiko Konagaya
Publisher : Springer
ISBN 13 : 3540322515
Total Pages : 198 pages
Book Rating : 4.5/5 (43 download)

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Book Synopsis Grid Computing in Life Science by : Akihiko Konagaya

Download or read book Grid Computing in Life Science written by Akihiko Konagaya and published by Springer. This book was released on 2005-02-18 with total page 198 pages. Available in PDF, EPUB and Kindle. Book excerpt: Researchers in the ?eld of life sciences rely increasingly on information te- nology to extract and manage relevant knowledge. The complex computational and data management needs of life science research make Grid technologies an attractive support solution. However, many important issues must be addressed before the Life Science Grid becomes commonplace. The 1st International Life Science Grid Workshop (LSGRID 2004) was held in Kanazawa Japan, May 31–June 1, 2004. This workshop focused on life s- ence applications of grid systems especially for bionetwork research and systems biology which require heterogeneous data integration from genome to phenome, mathematical modeling and simulation from molecular to population levels, and high-performance computing including parallel processing, special hardware and grid computing. Fruitful discussions took place through 18 oral presentations, including a keynote address and ?ve invited talks, and 16 poster and demonstration p- sentations in the ?elds of grid infrastructure for life sciences, systems biology, massive data processing, databases and data grids, grid portals and pipelines for functional annotation, parallel and distributed applications, and life science grid projects. The workshop emphasized the practical aspects of grid techno- gies in terms of improving grid-enabled data/information/knowledge sharing, high-performance computing, and collaborative projects. There was agreement among the participants that the advancement of grid technologies for life science research requires further concerted actions and promotion of grid applications. We therefore concluded the workshop with the announcement of LSGRID 2005.

Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine, and Healthcare

Author : Cannataro, Mario
Publisher : IGI Global
ISBN 13 : 1605663751
Total Pages : 960 pages
Book Rating : 4.6/5 (56 download)

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Book Synopsis Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine, and Healthcare by : Cannataro, Mario

Download or read book Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine, and Healthcare written by Cannataro, Mario and published by IGI Global. This book was released on 2009-05-31 with total page 960 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This book provides methodologies and developments of grid technologies applied in different fields of life sciences"--Provided by publisher.

Grid Computing In The Life Science - Proceedings Of The 2nd International Life Science Grid Workshop, Lsgrid 2005

Author : Tin Wee Tan
Publisher : World Scientific
ISBN 13 : 9814476560
Total Pages : 246 pages
Book Rating : 4.8/5 (144 download)

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Book Synopsis Grid Computing In The Life Science - Proceedings Of The 2nd International Life Science Grid Workshop, Lsgrid 2005 by : Tin Wee Tan

Download or read book Grid Computing In The Life Science - Proceedings Of The 2nd International Life Science Grid Workshop, Lsgrid 2005 written by Tin Wee Tan and published by World Scientific. This book was released on 2006-10-26 with total page 246 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the second volume in the series of proceedings from the International Workshop on Life Science Grid. It represents the few, if not the only, dedicated proceedings volumes that gathers together the presentations of leaders in the emerging sub-discipline of grid computing for the life sciences.The volume covers the latest developments, trends and trajectories in life science grid computing from top names in bioinformatics and computational biology: A Konagaya; J C Wooley of the National Science Foundation (NSF) and DoE thought leader in supercomputing and life science computing, and one of the key people in the NSF CIBIO initiative; P Arzberger of PRAGMA fame; and R Sinnott of UK e-Science.

Grid Computing for Bioinformatics and Computational Biology

Author : El-Ghazali Talbi
Publisher : John Wiley & Sons
ISBN 13 : 9780470191620
Total Pages : 400 pages
Book Rating : 4.1/5 (916 download)

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Book Synopsis Grid Computing for Bioinformatics and Computational Biology by : El-Ghazali Talbi

Download or read book Grid Computing for Bioinformatics and Computational Biology written by El-Ghazali Talbi and published by John Wiley & Sons. This book was released on 2007-12-04 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: The only single, up-to-date source for Grid issues in bioinformatics and biology Bioinformatics is fast emerging as an important discipline for academic research and industrial applications, creating a need for the use of Grid computing techniques for large-scale distributed applications. This book successfully presents Grid algorithms and their real-world applications, provides details on modern and ongoing research, and explores software frameworks that integrate bioinformatics and computational biology. Additional coverage includes: * Bio-ontology and data mining * Data visualization * DNA assembly, clustering, and mapping * Molecular evolution and phylogeny * Gene expression and micro-arrays * Molecular modeling and simulation * Sequence search and alignment * Protein structure prediction * Grid infrastructure, middleware, and tools for bio data Grid Computing for Bioinformatics and Computational Biology is an indispensable resource for professionals in several research and development communities including bioinformatics, computational biology, Grid computing, data mining, and more. It also serves as an ideal textbook for undergraduate- and graduate-level courses in bioinformatics and Grid computing.

Life Sciences and Related Fields

Author : International Union of Microbiological Societies
Publisher : National Academies Press
ISBN 13 : 0309210712
Total Pages : 164 pages
Book Rating : 4.3/5 (92 download)

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Book Synopsis Life Sciences and Related Fields by : International Union of Microbiological Societies

Download or read book Life Sciences and Related Fields written by International Union of Microbiological Societies and published by National Academies Press. This book was released on 2012-01-02 with total page 164 pages. Available in PDF, EPUB and Kindle. Book excerpt: During the last decade, national and international scientific organizations have become increasingly engaged in considering how to respond to the biosecurity implications of developments in the life sciences and in assessing trends in science and technology (S&T) relevant to biological and chemical weapons nonproliferation. The latest example is an international workshop, Trends in Science and Technology Relevant to the Biological Weapons Convention, held October 31 - November 3, 2010 at the Institute of Biophysics of the Chinese Academy of Sciences in Beijing. Life Sciences and Related Fields summarizes the workshop, plenary, and breakout discussion sessions held during this convention. Given the immense diversity of current research and development, the report is only able to provide an overview of the areas of science and technology the committee believes are potentially relevant to the future of the Biological and Toxic Weapons Convention (BWC), although there is an effort to identify areas that seemed particularly ripe for further exploration and analysis. The report offers findings and conclusions organized around three fundamental and frequently cited trends in S&T that affect the scope and operation of the convention: The rapid pace of change in the life sciences and related fields; The increasing diffusion of life sciences research capacity and its applications, both internationally and beyond traditional research institutions; and The extent to which additional scientific and technical disciplines beyond biology are increasingly involved in life sciences research. The report does not make recommendations about policy options to respond to the implications of the identified trends. The choice of such responses rests with the 164 States Parties to the Convention, who must take into account multiple factors beyond the project's focus on the state of the science.

Grid Computing

Author : Nikolaos P. Preve
Publisher : Springer Science & Business Media
ISBN 13 : 0857296760
Total Pages : 317 pages
Book Rating : 4.8/5 (572 download)

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Book Synopsis Grid Computing by : Nikolaos P. Preve

Download or read book Grid Computing written by Nikolaos P. Preve and published by Springer Science & Business Media. This book was released on 2011-06-23 with total page 317 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents research from many of the major projects involved in the emerging global grid infrastructure. With a particular focus on the practical advantages and applications of grid computing – including real case studies – the book provides an in-depth study of grid technology for a wide range of different needs. Topics: examines a remote instrumentation infrastructure, and a methodology to support e-science applications on e-infrastructures; describes the GEMS storage system, and pipeline workflows for optimizing end-to-end performance in wide-area networks; investigates semantic grid system architecture, social grid agents, and monitoring platforms designed for large-scale distributed systems; explores job control using service-level agreements; introduces the Composable Services Architecture for dynamic service provisioning, and the semantically driven communication middleware platform, Phoenix; discusses the PhyloGrid application, and a numerical simulation performed using grid computing.

HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences

Author : S. Gesing
Publisher : IOS Press
ISBN 13 : 1614990549
Total Pages : 232 pages
Book Rating : 4.6/5 (149 download)

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Book Synopsis HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences by : S. Gesing

Download or read book HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences written by S. Gesing and published by IOS Press. This book was released on 2012-05-10 with total page 232 pages. Available in PDF, EPUB and Kindle. Book excerpt: The integration of grid, cloud and other e-infrastructures into the fields of biology, bioinformatics, biomedicine, and healthcare are crucial if optimum use is to be made of the latest high-performance and distributed computer technology in these areas. Science gateways are concerned with offering intuitive graphical user interfaces to applications, data, and tools on distributed computing infrastructures. This book presents the joint proceedings of the Tenth HealthGrid Conference and the Fourth International Workshop on Science Gateways for Life Sciences (IWSG-Life), held in Amsterdam, Netherlands in May 2012. The HealthGrid conference promotes the exchange and debate of ideas, technologies and solutions likely to promote the integration of grids into biomedical research and health in the broadest sense. The IWSG-Life workshop series is a forum that brings together scientists from the field of life sciences, bioinformatics, and computer science to advance computational biology and chemistry in the context of science gateways. These events have been jointly organized to maximize the benefit from synergies and stimulate the forging of further links in joint research areas. The book is divided into three parts. Part I includes contributions accepted to the HealthGrid conference; Part II contains the papers about various aspects of the development and usage of science gateways for life sciences. The joint session is recorded in Part III, and addresses the topic of science gateways for biomedical research. The book will provide insights and new perspectives for all those involved in the research and use of infrastructures and technology for healthcare and life sciences.

Grid Computing

Author : Fran Berman
Publisher : John Wiley and Sons
ISBN 13 : 9780470853191
Total Pages : 1076 pages
Book Rating : 4.8/5 (531 download)

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Book Synopsis Grid Computing by : Fran Berman

Download or read book Grid Computing written by Fran Berman and published by John Wiley and Sons. This book was released on 2003-04-18 with total page 1076 pages. Available in PDF, EPUB and Kindle. Book excerpt: Unter "Grid Computing" versteht man die gleichzeitige Nutzung vieler Computer in einem Netzwerk für die Lösung eines einzelnen Problems. Grundsätzliche Aspekte und anwendungsbezogene Details zu diesem Gebiet finden Sie in diesem Band. - Grid Computing ist ein viel versprechender Trend, denn man kann damit (1) vorhandene Computer-Ressourcen kosteneffizient nutzen, (2) Probleme lösen, für die enorme Rechenleistungen erforderlich sind, und (3) Synergieeffekte erzielen, auch im globalen Maßstab - Ansatz ist in Forschung und Industrie (IBM, Sun, HP und andere) zunehmend populär (aktuelles Beispiel: Genomforschung) - Buch deckt Motivationen zur Einführung von Grids ebenso ab wie technologische Grundlagen und ausgewählte Beispiele für moderne Anwendungen

Grid and Cloud Computing: Concepts, Methodologies, Tools and Applications

Author : Management Association, Information Resources
Publisher : IGI Global
ISBN 13 : 1466608803
Total Pages : 2005 pages
Book Rating : 4.4/5 (666 download)

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Book Synopsis Grid and Cloud Computing: Concepts, Methodologies, Tools and Applications by : Management Association, Information Resources

Download or read book Grid and Cloud Computing: Concepts, Methodologies, Tools and Applications written by Management Association, Information Resources and published by IGI Global. This book was released on 2012-04-30 with total page 2005 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This reference presents a vital compendium of research detailing the latest case studies, architectures, frameworks, methodologies, and research on Grid and Cloud Computing"--

Data Integration in the Life Sciences

Author : Ulf Leser
Publisher : Springer Science & Business Media
ISBN 13 : 3540365931
Total Pages : 308 pages
Book Rating : 4.5/5 (43 download)

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Book Synopsis Data Integration in the Life Sciences by : Ulf Leser

Download or read book Data Integration in the Life Sciences written by Ulf Leser and published by Springer Science & Business Media. This book was released on 2006-07-06 with total page 308 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Workshop on Data Integration in the Life Sciences, DILS 2006, held in Hinxton, UK in July 2006. Presents 19 revised full papers and 4 revised short papers together with 2 keynote talks, addressing current issues in data integration from the life science point of view. The papers are organized in topical sections on data integration, text mining, systems, and workflow.

Computational Life Sciences

Author : Jens Dörpinghaus
Publisher : Springer Nature
ISBN 13 : 303108411X
Total Pages : 593 pages
Book Rating : 4.0/5 (31 download)

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Book Synopsis Computational Life Sciences by : Jens Dörpinghaus

Download or read book Computational Life Sciences written by Jens Dörpinghaus and published by Springer Nature. This book was released on 2023-03-04 with total page 593 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book broadly covers the given spectrum of disciplines in Computational Life Sciences, transforming it into a strong helping hand for teachers, students, practitioners and researchers. In Life Sciences, problem-solving and data analysis often depend on biological expertise combined with technical skills in order to generate, manage and efficiently analyse big data. These technical skills can easily be enhanced by good theoretical foundations, developed from well-chosen practical examples and inspiring new strategies. This is the innovative approach of Computational Life Sciences-Data Engineering and Data Mining for Life Sciences: We present basic concepts, advanced topics and emerging technologies, introduce algorithm design and programming principles, address data mining and knowledge discovery as well as applications arising from real projects. Chapters are largely independent and often flanked by illustrative examples and practical advise.

Distributed, High-Performance and Grid Computing in Computational Biology

Author : Werner Dubitzky
Publisher : Springer Science & Business Media
ISBN 13 : 3540698418
Total Pages : 202 pages
Book Rating : 4.5/5 (46 download)

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Book Synopsis Distributed, High-Performance and Grid Computing in Computational Biology by : Werner Dubitzky

Download or read book Distributed, High-Performance and Grid Computing in Computational Biology written by Werner Dubitzky and published by Springer Science & Business Media. This book was released on 2007-01-03 with total page 202 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book constitutes the refereed proceedings of the International Workshop on Distributed, High-Performance and Grid Computing in Computational Biology, GCCB 2006, held in Eilat, Israel in January 2007 in conjunction with the 5th European Conference on Computational Biology, ECCB 2006. The 13 revised full papers presented were carefully reviewed and selected from many high quality submissions.

Parallel Computing for Bioinformatics and Computational Biology

Author : Albert Y. Zomaya
Publisher : John Wiley & Sons
ISBN 13 : 0471718483
Total Pages : 817 pages
Book Rating : 4.4/5 (717 download)

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Book Synopsis Parallel Computing for Bioinformatics and Computational Biology by : Albert Y. Zomaya

Download or read book Parallel Computing for Bioinformatics and Computational Biology written by Albert Y. Zomaya and published by John Wiley & Sons. This book was released on 2006-04-21 with total page 817 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discover how to streamline complex bioinformatics applications with parallel computing This publication enables readers to handle more complex bioinformatics applications and larger and richer data sets. As the editor clearly shows, using powerful parallel computing tools can lead to significant breakthroughs in deciphering genomes, understanding genetic disease, designing customized drug therapies, and understanding evolution. A broad range of bioinformatics applications is covered with demonstrations on how each one can be parallelized to improve performance and gain faster rates of computation. Current parallel computing techniques and technologies are examined, including distributed computing and grid computing. Readers are provided with a mixture of algorithms, experiments, and simulations that provide not only qualitative but also quantitative insights into the dynamic field of bioinformatics. Parallel Computing for Bioinformatics and Computational Biology is a contributed work that serves as a repository of case studies, collectively demonstrating how parallel computing streamlines difficult problems in bioinformatics and produces better results. Each of the chapters is authored by an established expert in the field and carefully edited to ensure a consistent approach and high standard throughout the publication. The work is organized into five parts: * Algorithms and models * Sequence analysis and microarrays * Phylogenetics * Protein folding * Platforms and enabling technologies Researchers, educators, and students in the field of bioinformatics will discover how high-performance computing can enable them to handle more complex data sets, gain deeper insights, and make new discoveries.

Grid Computing

Author : Jorge G. Barbosa
Publisher : Nova Science Publishers
ISBN 13 : 9781631177040
Total Pages : 0 pages
Book Rating : 4.1/5 (77 download)

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Book Synopsis Grid Computing by : Jorge G. Barbosa

Download or read book Grid Computing written by Jorge G. Barbosa and published by Nova Science Publishers. This book was released on 2015 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the past two decades, grid computing have fostered advances in several scientific domains by making resources available to a wide community and bridging scientific gaps. Grid infrastructures have been harnessing computational resources all around the world allowing all kinds of parallelisms to be explored. Other approaches to parallel and distributed computing still exist like the use of dedicated high-performance (HPC) infrastructures, and the use of clouds for computing and storage, but grid computing continues to be the predominant technology used for scientific computing in Europe, through the European Grid Infrastructure (EGI) and the European Middleware Initiative (EMI). Currently, there is a trend towards the use of cloud technologies for computing and storage. In Europe, this trend is being followed by taking advantage of all the experiences gained from building grid infrastructures and the technologies developed around them (resource management orchestration, unified job description languages, security, user interfaces, programming models, and scheduling policies, among others). As a result, the European Grid Infrastructure Federated Cloud is being built on top of the grid infrastructure already available. After almost two decades of the development of grid software and components and the emergence of competing technologies, now is the time to discuss current trends and to assess future prospects. When organising this book, the authors considered contributions that would review the current grid computing scenario as well as contributions that would summarise the main tools and technologies used so far. The chapters in this book provide reviews for the following topics: a) performance prediction for parallel and distributed computing systems, b) resource sharing on computational grids, c) economic models for resource management, and d) programming frameworks. The chapters address grid issues such as a) the challenges of designing efficient job schedulers for production grids, b) scalability analysis of bag-of-tasks applications, c) the energy efficiency of resource reservation-based scheduling, and d) the development of parallel applications using the grid environment. Additionally, the following tools are presented: a) a programming framework based on the concept of a pluggable grid service that avoids explicit calls to grid services in scientific code and b) a desktop grid framework that runs on top of a cloud and can be deployed on the fly. The authors were each invited to contribute a chapter to this book, which were carefully revised and selected based on their originality and the value of their contribution to the overall discussion on grid computing and its future prospects.

Parallel Computing for Bioinformatics and Computational Biology

Author : Albert Y. Zomaya
Publisher : John Wiley & Sons
ISBN 13 : 0471756490
Total Pages : 814 pages
Book Rating : 4.4/5 (717 download)

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Book Synopsis Parallel Computing for Bioinformatics and Computational Biology by : Albert Y. Zomaya

Download or read book Parallel Computing for Bioinformatics and Computational Biology written by Albert Y. Zomaya and published by John Wiley & Sons. This book was released on 2006-04-14 with total page 814 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discover how to streamline complex bioinformatics applications with parallel computing This publication enables readers to handle more complex bioinformatics applications and larger and richer data sets. As the editor clearly shows, using powerful parallel computing tools can lead to significant breakthroughs in deciphering genomes, understanding genetic disease, designing customized drug therapies, and understanding evolution. A broad range of bioinformatics applications is covered with demonstrations on how each one can be parallelized to improve performance and gain faster rates of computation. Current parallel computing techniques and technologies are examined, including distributed computing and grid computing. Readers are provided with a mixture of algorithms, experiments, and simulations that provide not only qualitative but also quantitative insights into the dynamic field of bioinformatics. Parallel Computing for Bioinformatics and Computational Biology is a contributed work that serves as a repository of case studies, collectively demonstrating how parallel computing streamlines difficult problems in bioinformatics and produces better results. Each of the chapters is authored by an established expert in the field and carefully edited to ensure a consistent approach and high standard throughout the publication. The work is organized into five parts: * Algorithms and models * Sequence analysis and microarrays * Phylogenetics * Protein folding * Platforms and enabling technologies Researchers, educators, and students in the field of bioinformatics will discover how high-performance computing can enable them to handle more complex data sets, gain deeper insights, and make new discoveries.

Grid and Cloud Computing

Author : Katarina Stanoevska
Publisher : Springer Science & Business Media
ISBN 13 : 3642051936
Total Pages : 274 pages
Book Rating : 4.6/5 (42 download)

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Book Synopsis Grid and Cloud Computing by : Katarina Stanoevska

Download or read book Grid and Cloud Computing written by Katarina Stanoevska and published by Springer Science & Business Media. This book was released on 2009-11-04 with total page 274 pages. Available in PDF, EPUB and Kindle. Book excerpt: In today’s dynamic business environment, IT departments are under permanent pressure to meet two divergent requirements: to reduce costs and to support business agility with higher flexibility and responsiveness of the IT infrastructure. Grid and Cloud Computing enable a new approach towards IT. They enable increased scalability and more efficient use of IT based on virtualization of heterogeneous and distributed IT resources. This book provides a thorough understanding of the fundamentals of Grids and Clouds and of how companies can benefit from them. A wide array of topics is covered, e.g. business models and legal aspects. The applicability of Grids and Clouds in companies is illustrated with four cases of real business experiments. The experiments illustrate the technical solutions and the organizational and IT governance challenges that arise with the introduction of Grids and Clouds. Practical guidelines on how to successfully introduce Grids and Clouds in companies are provided.