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Euclidean Distance Geometry
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Book Synopsis Euclidean Distance Geometry by : Leo Liberti
Download or read book Euclidean Distance Geometry written by Leo Liberti and published by Springer. This book was released on 2017-09-20 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook, the first of its kind, presents the fundamentals of distance geometry: theory, useful methodologies for obtaining solutions, and real world applications. Concise proofs are given and step-by-step algorithms for solving fundamental problems efficiently and precisely are presented in Mathematica®, enabling the reader to experiment with concepts and methods as they are introduced. Descriptive graphics, examples, and problems, accompany the real gems of the text, namely the applications in visualization of graphs, localization of sensor networks, protein conformation from distance data, clock synchronization protocols, robotics, and control of unmanned underwater vehicles, to name several. Aimed at intermediate undergraduates, beginning graduate students, researchers, and practitioners, the reader with a basic knowledge of linear algebra will gain an understanding of the basic theories of distance geometry and why they work in real life.
Book Synopsis Convex Optimization & Euclidean Distance Geometry by : Jon Dattorro
Download or read book Convex Optimization & Euclidean Distance Geometry written by Jon Dattorro and published by Meboo Publishing USA. This book was released on 2005 with total page 776 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of Euclidean distance matrices (EDMs) fundamentally asks what can be known geometrically given onlydistance information between points in Euclidean space. Each point may represent simply locationor, abstractly, any entity expressible as a vector in finite-dimensional Euclidean space.The answer to the question posed is that very much can be known about the points;the mathematics of this combined study of geometry and optimization is rich and deep.Throughout we cite beacons of historical accomplishment.The application of EDMs has already proven invaluable in discerning biological molecular conformation.The emerging practice of localization in wireless sensor networks, the global positioning system (GPS), and distance-based pattern recognitionwill certainly simplify and benefit from this theory.We study the pervasive convex Euclidean bodies and their various representations.In particular, we make convex polyhedra, cones, and dual cones more visceral through illustration, andwe study the geometric relation of polyhedral cones to nonorthogonal bases biorthogonal expansion.We explain conversion between halfspace- and vertex-descriptions of convex cones,we provide formulae for determining dual cones,and we show how classic alternative systems of linear inequalities or linear matrix inequalities and optimality conditions can be explained by generalized inequalities in terms of convex cones and their duals.The conic analogue to linear independence, called conic independence, is introducedas a new tool in the study of classical cone theory; the logical next step in the progression:linear, affine, conic.Any convex optimization problem has geometric interpretation.This is a powerful attraction: the ability to visualize geometry of an optimization problem.We provide tools to make visualization easier.The concept of faces, extreme points, and extreme directions of convex Euclidean bodiesis explained here, crucial to understanding convex optimization.The convex cone of positive semidefinite matrices, in particular, is studied in depth.We mathematically interpret, for example,its inverse image under affine transformation, and we explainhow higher-rank subsets of its boundary united with its interior are convex.The Chapter on "Geometry of convex functions",observes analogies between convex sets and functions:The set of all vector-valued convex functions is a closed convex cone.Included among the examples in this chapter, we show how the real affinefunction relates to convex functions as the hyperplane relates to convex sets.Here, also, pertinent results formultidimensional convex functions are presented that are largely ignored in the literature;tricks and tips for determining their convexityand discerning their geometry, particularly with regard to matrix calculus which remains largely unsystematizedwhen compared with the traditional practice of ordinary calculus.Consequently, we collect some results of matrix differentiation in the appendices.The Euclidean distance matrix (EDM) is studied,its properties and relationship to both positive semidefinite and Gram matrices.We relate the EDM to the four classical axioms of the Euclidean metric;thereby, observing the existence of an infinity of axioms of the Euclidean metric beyondthe triangle inequality. We proceed byderiving the fifth Euclidean axiom and then explain why furthering this endeavoris inefficient because the ensuing criteria (while describing polyhedra)grow linearly in complexity and number.Some geometrical problems solvable via EDMs,EDM problems posed as convex optimization, and methods of solution arepresented;\eg, we generate a recognizable isotonic map of the United States usingonly comparative distance information (no distance information, only distance inequalities).We offer a new proof of the classic Schoenberg criterion, that determines whether a candidate matrix is an EDM. Our proofrelies on fundamental geometry; assuming, any EDM must correspond to a list of points contained in some polyhedron(possibly at its vertices) and vice versa.It is not widely known that the Schoenberg criterion implies nonnegativity of the EDM entries; proved here.We characterize the eigenvalues of an EDM matrix and then devisea polyhedral cone required for determining membership of a candidate matrix(in Cayley-Menger form) to the convex cone of Euclidean distance matrices (EDM cone); \ie,a candidate is an EDM if and only if its eigenspectrum belongs to a spectral cone for EDM^N.We will see spectral cones are not unique.In the chapter "EDM cone", we explain the geometric relationship betweenthe EDM cone, two positive semidefinite cones, and the elliptope.We illustrate geometric requirements, in particular, for projection of a candidate matrixon a positive semidefinite cone that establish its membership to the EDM cone. The faces of the EDM cone are described,but still open is the question whether all its faces are exposed as they are for the positive semidefinite cone.The classic Schoenberg criterion, relating EDM and positive semidefinite cones, isrevealed to be a discretized membership relation (a generalized inequality, a new Farkas''''''''-like lemma)between the EDM cone and its ordinary dual. A matrix criterion for membership to the dual EDM cone is derived thatis simpler than the Schoenberg criterion.We derive a new concise expression for the EDM cone and its dual involvingtwo subspaces and a positive semidefinite cone."Semidefinite programming" is reviewedwith particular attention to optimality conditionsof prototypical primal and dual conic programs,their interplay, and the perturbation method of rank reduction of optimal solutions(extant but not well-known).We show how to solve a ubiquitous platonic combinatorial optimization problem from linear algebra(the optimal Boolean solution x to Ax=b)via semidefinite program relaxation.A three-dimensional polyhedral analogue for the positive semidefinite cone of 3X3 symmetricmatrices is introduced; a tool for visualizing in 6 dimensions.In "EDM proximity"we explore methods of solution to a few fundamental and prevalentEuclidean distance matrix proximity problems; the problem of finding that Euclidean distance matrix closestto a given matrix in the Euclidean sense.We pay particular attention to the problem when compounded with rank minimization.We offer a new geometrical proof of a famous result discovered by Eckart \& Young in 1936 regarding Euclideanprojection of a point on a subset of the positive semidefinite cone comprising all positive semidefinite matriceshaving rank not exceeding a prescribed limit rho.We explain how this problem is transformed to a convex optimization for any rank rho.
Book Synopsis Distance Geometry by : Antonio Mucherino
Download or read book Distance Geometry written by Antonio Mucherino and published by Springer. This book was released on 2015-01-28 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is a collection of research surveys on the Distance Geometry Problem (DGP) and its applications. It will be divided into three parts: Theory, Methods and Applications. Each part will contain at least one survey and several research papers. The first part, Theory, will deal with theoretical aspects of the DGP, including a new class of problems and the study of its complexities as well as the relation between DGP and other related topics, such as: distance matrix theory, Euclidean distance matrix completion problem, multispherical structure of distance matrices, distance geometry and geometric algebra, algebraic distance geometry theory, visualization of K-dimensional structures in the plane, graph rigidity, and theory of discretizable DGP: symmetry and complexity. The second part, Methods, will discuss mathematical and computational properties of methods developed to the problems considered in the first chapter including continuous methods (based on Gaussian and hyperbolic smoothing, difference of convex functions, semidefinite programming, branch-and-bound), discrete methods (based on branch-and-prune, geometric build-up, graph rigidity), and also heuristics methods (based on simulated annealing, genetic algorithms, tabu search, variable neighborhood search). Applications will comprise the third part and will consider applications of DGP to NMR structure calculation, rational drug design, molecular dynamics simulations, graph drawing and sensor network localization. This volume will be the first edited book on distance geometry and applications. The editors are in correspondence with the major contributors to the field of distance geometry, including important research centers in molecular biology such as Institut Pasteur in Paris.
Book Synopsis Distance Geometry by : Antonio Mucherino
Download or read book Distance Geometry written by Antonio Mucherino and published by Springer Science & Business Media. This book was released on 2012-12-22 with total page 436 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is a collection of research surveys on the Distance Geometry Problem (DGP) and its applications. It will be divided into three parts: Theory, Methods and Applications. Each part will contain at least one survey and several research papers. The first part, Theory, will deal with theoretical aspects of the DGP, including a new class of problems and the study of its complexities as well as the relation between DGP and other related topics, such as: distance matrix theory, Euclidean distance matrix completion problem, multispherical structure of distance matrices, distance geometry and geometric algebra, algebraic distance geometry theory, visualization of K-dimensional structures in the plane, graph rigidity, and theory of discretizable DGP: symmetry and complexity. The second part, Methods, will discuss mathematical and computational properties of methods developed to the problems considered in the first chapter including continuous methods (based on Gaussian and hyperbolic smoothing, difference of convex functions, semidefinite programming, branch-and-bound), discrete methods (based on branch-and-prune, geometric build-up, graph rigidity), and also heuristics methods (based on simulated annealing, genetic algorithms, tabu search, variable neighborhood search). Applications will comprise the third part and will consider applications of DGP to NMR structure calculation, rational drug design, molecular dynamics simulations, graph drawing and sensor network localization. This volume will be the first edited book on distance geometry and applications. The editors are in correspondence with the major contributors to the field of distance geometry, including important research centers in molecular biology such as Institut Pasteur in Paris.
Book Synopsis Euclidean Distance Matrices and Their Applications in Rigidity Theory by : Abdo Y. Alfakih
Download or read book Euclidean Distance Matrices and Their Applications in Rigidity Theory written by Abdo Y. Alfakih and published by Springer. This book was released on 2018-10-13 with total page 251 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book offers a comprehensive and accessible exposition of Euclidean Distance Matrices (EDMs) and rigidity theory of bar-and-joint frameworks. It is based on the one-to-one correspondence between EDMs and projected Gram matrices. Accordingly the machinery of semidefinite programming is a common thread that runs throughout the book. As a result, two parallel approaches to rigidity theory are presented. The first is traditional and more intuitive approach that is based on a vector representation of point configuration. The second is based on a Gram matrix representation of point configuration. Euclidean Distance Matrices and Their Applications in Rigidity Theory begins by establishing the necessary background needed for the rest of the book. The focus of Chapter 1 is on pertinent results from matrix theory, graph theory and convexity theory, while Chapter 2 is devoted to positive semidefinite (PSD) matrices due to the key role these matrices play in our approach. Chapters 3 to 7 provide detailed studies of EDMs, and in particular their various characterizations, classes, eigenvalues and geometry. Chapter 8 serves as a transitional chapter between EDMs and rigidity theory. Chapters 9 and 10 cover local and universal rigidities of bar-and-joint frameworks. This book is self-contained and should be accessible to a wide audience including students and researchers in statistics, operations research, computational biochemistry, engineering, computer science and mathematics.
Book Synopsis Taxicab Geometry by : Eugene F. Krause
Download or read book Taxicab Geometry written by Eugene F. Krause and published by Courier Corporation. This book was released on 2012-04-30 with total page 96 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fascinating, accessible introduction to unusual mathematical system in which distance is not measured by straight lines. Illustrated topics include applications to urban geography and comparisons to Euclidean geometry. Selected answers to problems.
Book Synopsis Convex Optimization Et Euclidean Distance Geometry by :
Download or read book Convex Optimization Et Euclidean Distance Geometry written by and published by . This book was released on 2013 with total page 710 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Euclidean and Non-Euclidean Geometry International Student Edition by : Patrick J. Ryan
Download or read book Euclidean and Non-Euclidean Geometry International Student Edition written by Patrick J. Ryan and published by Cambridge University Press. This book was released on 2009-09-04 with total page 237 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book gives a rigorous treatment of the fundamentals of plane geometry: Euclidean, spherical, elliptical and hyperbolic.
Book Synopsis Theory and Applications of Distance Geometry by : Leonard Mascot Blumenthal
Download or read book Theory and Applications of Distance Geometry written by Leonard Mascot Blumenthal and published by Chelsea Publishing Company, Incorporated. This book was released on 1970 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Euclid's Elements (the Thirteen Books) by : Euclid
Download or read book Euclid's Elements (the Thirteen Books) written by Euclid and published by . This book was released on 2017-12-17 with total page 404 pages. Available in PDF, EPUB and Kindle. Book excerpt: Euclid was a mathematician from the Greek city of Alexandria who lived during the 4th and 3rd century B.C. and is often referred to as the "father of geometry." Within his foundational treatise "Elements," Euclid presents the results of earlier mathematicians and includes many of his own theories in a systematic, concise book that utilized a brief set of axioms and meticulous proofs to solidify his deductions. In addition to its easily referenced geometry, "Elements" also includes number theory and other mathematical considerations. For centuries, this work was a primary textbook of mathematics, containing the only framework for geometry known by mathematicians until the development of "non-Euclidian" geometry in the late 19th century. The extent to which Euclid's "Elements" is of his own original authorship or borrowed from previous scholars is unknown, however despite this fact it was his collation of these basic mathematical principles for which most of the world would come to the study of geometry. Today, Euclid's "Elements" is acknowledged as one of the most influential mathematical texts in history. This volume includes all thirteen books of Euclid's "Elements," is printed on premium acid-free paper, and follows the translation of Thomas Heath.
Book Synopsis Encyclopedia of Distances by : Michel Marie Deza
Download or read book Encyclopedia of Distances written by Michel Marie Deza and published by Springer. This book was released on 2014-10-08 with total page 731 pages. Available in PDF, EPUB and Kindle. Book excerpt: This updated and revised third edition of the leading reference volume on distance metrics includes new items from very active research areas in the use of distances and metrics such as geometry, graph theory, probability theory and analysis. Among the new topics included are, for example, polyhedral metric space, nearness matrix problems, distances between belief assignments, distance-related animal settings, diamond-cutting distances, natural units of length, Heidegger’s de-severance distance, and brain distances. The publication of this volume coincides with intensifying research efforts into metric spaces and especially distance design for applications. Accurate metrics have become a crucial goal in computational biology, image analysis, speech recognition and information retrieval. Leaving aside the practical questions that arise during the selection of a ‘good’ distance function, this work focuses on providing the research community with an invaluable comprehensive listing of the main available distances. As well as providing standalone introductions and definitions, the encyclopedia facilitates swift cross-referencing with easily navigable bold-faced textual links to core entries. In addition to distances themselves, the authors have collated numerous fascinating curiosities in their Who’s Who of metrics, including distance-related notions and paradigms that enable applied mathematicians in other sectors to deploy research tools that non-specialists justly view as arcane. In expanding access to these techniques, and in many cases enriching the context of distances themselves, this peerless volume is certain to stimulate fresh research.
Book Synopsis A Simple Non-Euclidean Geometry and Its Physical Basis by : I.M. Yaglom
Download or read book A Simple Non-Euclidean Geometry and Its Physical Basis written by I.M. Yaglom and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 326 pages. Available in PDF, EPUB and Kindle. Book excerpt: There are many technical and popular accounts, both in Russian and in other languages, of the non-Euclidean geometry of Lobachevsky and Bolyai, a few of which are listed in the Bibliography. This geometry, also called hyperbolic geometry, is part of the required subject matter of many mathematics departments in universities and teachers' colleges-a reflec tion of the view that familiarity with the elements of hyperbolic geometry is a useful part of the background of future high school teachers. Much attention is paid to hyperbolic geometry by school mathematics clubs. Some mathematicians and educators concerned with reform of the high school curriculum believe that the required part of the curriculum should include elements of hyperbolic geometry, and that the optional part of the curriculum should include a topic related to hyperbolic geometry. I The broad interest in hyperbolic geometry is not surprising. This interest has little to do with mathematical and scientific applications of hyperbolic geometry, since the applications (for instance, in the theory of automorphic functions) are rather specialized, and are likely to be encountered by very few of the many students who conscientiously study (and then present to examiners) the definition of parallels in hyperbolic geometry and the special features of configurations of lines in the hyperbolic plane. The principal reason for the interest in hyperbolic geometry is the important fact of "non-uniqueness" of geometry; of the existence of many geometric systems.
Book Synopsis Encyclopedia of Distances by : Michel Marie Deza
Download or read book Encyclopedia of Distances written by Michel Marie Deza and published by Springer Science & Business Media. This book was released on 2012-10-28 with total page 644 pages. Available in PDF, EPUB and Kindle. Book excerpt: This updated and revised second edition of the leading reference volume on distance metrics includes a wealth of new material that reflects advances in a developing field now regarded as an essential tool in many areas of pure and applied mathematics. Its publication coincides with intensifying research efforts into metric spaces and especially distance design for applications. Accurate metrics have become a crucial goal in computational biology, image analysis, speech recognition and information retrieval. The content focuses on providing academics with an invaluable comprehensive listing of the main available distances. As well as standalone introductions and definitions, the encyclopedia facilitates swift cross-referencing with easily navigable bold-faced textual links to core entries, and includes a wealth of fascinating curiosities that enable non-specialists to deploy research tools previously viewed as arcane. Its value-added context is certain to open novel avenues of research.
Book Synopsis Distance Geometry and Molecular Conformation by : G. M. Crippen
Download or read book Distance Geometry and Molecular Conformation written by G. M. Crippen and published by John Wiley & Sons. This book was released on 1988 with total page 564 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis The Foundations of Geometry and the Non-Euclidean Plane by : G.E. Martin
Download or read book The Foundations of Geometry and the Non-Euclidean Plane written by G.E. Martin and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 525 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a text for junior, senior, or first-year graduate courses traditionally titled Foundations of Geometry and/or Non Euclidean Geometry. The first 29 chapters are for a semester or year course on the foundations of geometry. The remaining chap ters may then be used for either a regular course or independent study courses. Another possibility, which is also especially suited for in-service teachers of high school geometry, is to survey the the fundamentals of absolute geometry (Chapters 1 -20) very quickly and begin earnest study with the theory of parallels and isometries (Chapters 21 -30). The text is self-contained, except that the elementary calculus is assumed for some parts of the material on advanced hyperbolic geometry (Chapters 31 -34). There are over 650 exercises, 30 of which are 10-part true-or-false questions. A rigorous ruler-and-protractor axiomatic development of the Euclidean and hyperbolic planes, including the classification of the isometries of these planes, is balanced by the discussion about this development. Models, such as Taxicab Geometry, are used exten sively to illustrate theory. Historical aspects and alternatives to the selected axioms are prominent. The classical axiom systems of Euclid and Hilbert are discussed, as are axiom systems for three and four-dimensional absolute geometry and Pieri's system based on rigid motions. The text is divided into three parts. The Introduction (Chapters 1 -4) is to be read as quickly as possible and then used for ref erence if necessary.
Book Synopsis Global Optimization by : Leo Liberti
Download or read book Global Optimization written by Leo Liberti and published by Springer Science & Business Media. This book was released on 2006-02-21 with total page 454 pages. Available in PDF, EPUB and Kindle. Book excerpt: Most global optimization literature focuses on theory. This book, however, contains descriptions of new implementations of general-purpose or problem-specific global optimization algorithms. It discusses existing software packages from which the entire community can learn. The contributors are experts in the discipline of actually getting global optimization to work, and the book provides a source of ideas for people needing to implement global optimization software.
Book Synopsis Barycentric Calculus in Euclidean and Hyperbolic Geometry by : Abraham A. Ungar
Download or read book Barycentric Calculus in Euclidean and Hyperbolic Geometry written by Abraham A. Ungar and published by World Scientific. This book was released on 2010 with total page 360 pages. Available in PDF, EPUB and Kindle. Book excerpt: The word barycentric is derived from the Greek word barys (heavy), and refers to center of gravity. Barycentric calculus is a method of treating geometry by considering a point as the center of gravity of certain other points to which weights are ascribed. Hence, in particular, barycentric calculus provides excellent insight into triangle centers. This unique book on barycentric calculus in Euclidean and hyperbolic geometry provides an introduction to the fascinating and beautiful subject of novel triangle centers in hyperbolic geometry along with analogies they share with familiar triangle centers in Euclidean geometry. As such, the book uncovers magnificent unifying notions that Euclidean and hyperbolic triangle centers share. In his earlier books the author adopted Cartesian coordinates, trigonometry and vector algebra for use in hyperbolic geometry that is fully analogous to the common use of Cartesian coordinates, trigonometry and vector algebra in Euclidean geometry. As a result, powerful tools that are commonly available in Euclidean geometry became available in hyperbolic geometry as well, enabling one to explore hyperbolic geometry in novel ways. In particular, this new book establishes hyperbolic barycentric coordinates that are used to determine various hyperbolic triangle centers just as Euclidean barycentric coordinates are commonly used to determine various Euclidean triangle centers. The hunt for Euclidean triangle centers is an old tradition in Euclidean geometry, resulting in a repertoire of more than three thousand triangle centers that are known by their barycentric coordinate representations. The aim of this book is to initiate a fully analogous hunt for hyperbolic triangle centers that will broaden the repertoire of hyperbolic triangle centers provided here.
