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Deep Learning Assisted Phase Retrieval And Computational Methods In Coherent Diffractive Imaging
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Book Synopsis Deep Learning Assisted Phase Retrieval and Computational Methods in Coherent Diffractive Imaging by : Alfredo Bellisario
Download or read book Deep Learning Assisted Phase Retrieval and Computational Methods in Coherent Diffractive Imaging written by Alfredo Bellisario and published by . This book was released on 2024 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Deep Learning Based Phase Retrieval for X-ray Phase Contrast Imaging by : Kannara Mom
Download or read book Deep Learning Based Phase Retrieval for X-ray Phase Contrast Imaging written by Kannara Mom and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The development of highly coherent X-ray sources, such as third-generation synchrotron radiation facilities, has significantly contributed to the advancement of phase contrast imaging. The high degree of coherence of these sources enables efficient implementation of phase contrast techniques, and can increase sensitivity by several orders of magnitude. This novel imaging technique has found applications in a wide range of fields, including material science, paleontology, bone research, medicine, and biology. It enables the imaging of samples with low absorption constituents, where traditional absorption-based methods may fail to provide sufficient contrast. Several phase-sensitive imaging techniques have been developed, among them, propagation-based imaging requires no equipment other than the source, object and detector. Although the intensity can be measured at one or several propagation distances, the phase information is lost and must be estimated from those diffraction patterns, a process called phase retrieval. Phase retrieval in this context is a nonlinear ill-posed inverse problem. Various classical methods have been proposed to retrieve the phase, either by linearizing the problem to obtain an analytical solution, or by iterative algorithms. The main purpose of this thesis was to study what new deep learning approaches could bring to this phase retrieval problem. Various deep learning algorithms have been proposed and evaluated to address this problem. In the first part of this work, we show how neural networks can be used to reconstruct directly from measurements data, without model information. The architecture of the Mixed Scale Dense Network (MS-D Net) is introduced, combining dilated convolution and dense connection. In the second part of this thesis, we propose a nonlinear primal-dual algorithm for the retrieval of phase shift and absorption from a single X-ray in-line phase contrast. We showed that choosing different regularizers for absorption and phase can improve the reconstructions. In the third part, we propose to integrate neural networks into an existing optimization scheme using so-called unrolling approaches, in order to give the convolutional neural networks a specific role in the reconstruction. The performance of theses algorithms are evaluated using simulated noisy data as well as images acquired at NanoMAX (MAX IV, Lund, Sweden).
Book Synopsis Computational Imaging Through Deep Learning by : Shuai Li (Ph.D.)
Download or read book Computational Imaging Through Deep Learning written by Shuai Li (Ph.D.) and published by . This book was released on 2019 with total page 154 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational imaging (CI) is a class of imaging systems that uses inverse algorithms to recover an unknown object from the physical measurement. Traditional inverse algorithms in CI obtain an estimate of the object by minimizing the Tikhonov functional, which requires explicit formulations of the forward operator of the physical system, as well as the prior knowledge about the class of objects being imaged. In recent years, machine learning architectures, and deep learning (DL) in particular, have attracted increasing attentions from CI researchers. Unlike traditional inverse algorithms in CI, DL approach learns both the forward operator and the objects’ prior implicitly from training examples. Therefore, it is especially attractive when the forward imaging model is uncertain (e.g. imaging through random scattering media), or the prior about the class of objects is difficult to be expressed analytically (e.g. natural images). In this thesis, the application of DL approaches in two different CI scenarios are investigated: imaging through a glass diffuser and quantitative phase retrieval (QPR), where an Imaging through Diffuser Network (IDiffNet) and a Phase Extraction Neural Network (PhENN) are experimentally demonstrated, respectively. This thesis also studies the influences of the two main factors that determine the performance of a trained neural network: network architecture (connectivity, network depth, etc) and training example quality (spatial frequency content in particular). Motivated by the analysis of the latter factor, two novel approaches, spectral pre-modulation approach and Learning Synthesis by DNN (LS-DNN) method, are successively proposed to improve the visual qualities of the network outputs. Finally, the LS-DNN enhanced PhENN is applied to a phase microscope to recover the phase of a red blood cell (RBC) sample. Furthermore, through simulation of the learned weak object transfer function (WOTF) and experiment on a star-like phase target, we demonstrate that our network has indeed learned the correct physical model rather than doing something trivial as pattern matching.
Book Synopsis Deep Learning for Hyperspectral Image Analysis and Classification by : Linmi Tao
Download or read book Deep Learning for Hyperspectral Image Analysis and Classification written by Linmi Tao and published by Springer Nature. This book was released on 2021-02-20 with total page 207 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on deep learning-based methods for hyperspectral image (HSI) analysis. Unsupervised spectral-spatial adaptive band-noise factor-based formulation is devised for HSI noise detection and band categorization. The method to characterize the bands along with the noise estimation of HSIs will benefit subsequent remote sensing techniques significantly. This book develops on two fronts: On the one hand, it is aimed at domain professionals who want to have an updated overview of how hyperspectral acquisition techniques can combine with deep learning architectures to solve specific tasks in different application fields. On the other hand, the authors want to target the machine learning and computer vision experts by giving them a picture of how deep learning technologies are applied to hyperspectral data from a multidisciplinary perspective. The presence of these two viewpoints and the inclusion of application fields of remote sensing by deep learning are the original contributions of this review, which also highlights some potentialities and critical issues related to the observed development trends.
Book Synopsis Computational Optical Phase Imaging by : Cheng Liu
Download or read book Computational Optical Phase Imaging written by Cheng Liu and published by Springer Nature. This book was released on 2022-04-11 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this book, computational optical phase imaging techniques are presented along with Matlab codes that allow the reader to run their own simulations and gain a thorough understanding of the current state-of-the-art. The book focuses on modern applications of computational optical phase imaging in engineering measurements and biomedical imaging. Additionally, it discusses the future of computational optical phase imaging, especially in terms of system miniaturization and deep learning-based phase retrieval.
Book Synopsis Deep Learning Optics for Computational Microscopy and Diffractive Computing by : Bijie Bai
Download or read book Deep Learning Optics for Computational Microscopy and Diffractive Computing written by Bijie Bai and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The rapid development of machine learning has transformed conventional optical imaging processes, setting new benchmarks in computational imaging tasks. In this dissertation, we delve into the transformative impact of recent advancements in machine learning on optical imaging processes, focusing on how these technologies revolutionize computational imaging tasks. Specifically, this dissertation centers on two major topics: deep learning-enabled computational microscopy and the all-optical diffractive networks. Optical microscopy has long served as the benchmark technique for diagnosing various diseases over centuries. However, its reliance on high-end optical components and accessories, necessary to adapt to various imaging samples and conditions, often limits its applicability and throughput. Recent advancements in computational imaging techniques utilizing deep learning methods have transformed conventional microscopic imaging modalities, delivering both enhanced speed and superior image quality without introducing extra complexity of the optical systems. In the first topic of this dissertation, we demonstrate that deep learning-enabled image translation approach can significantly benefit a wide range of applications for microscopic imaging. We start with introducing a customized system for single-shot quantitative polarization imaging, capable of reconstructing comprehensive birefringent maps from a single image capture, which offers enhanced sensitivity and specificity in diagnosing crystal-induced diseases. Utilizing these quantitative birefringent maps as a baseline, we employ deep learning tools to convert phase-recovered holograms into quantitative birefringence maps, thereby improving the throughput of crystal detection with simplified system complexity. Extending this concept of deep learning-enabled image translation, we also explore its applications in histopathology. Our technique, termed as "virtual histological staining", transforms unstained biological samples into visually rich, stained-like images without the need for chemical agents. This innovation minimizes costs, labor, and diagnostic delays as well as opens up new possibilities in histopathology workflow. The evolution of deep learning tools not only facilities the optical image analysis and processing, but also provides guidance in design and enhancement of optical systems. The second topic of this dissertation is the development and application of diffractive deep neural networks (D2NN). Developed with deep learning, D2NNs execute given computational tasks by manipulating light diffraction through a series of engineered surfaces, which is completed at the speed of light propagation with negligible power consumption. Based on this framework, a lot of novel computational tasks can be executed in an all-optical way, which is beyond the capabilities of the traditional optics design approaches. We introduce several all-optical computational imaging applications based on D2NN, including class-specific imaging, class-specific image encryption, and unidirectional image magnification and demagnification, demonstrating the versatility of this promising framework.
Book Synopsis Deep Learning with Physical and Power-spectral Priors for Robust Image Inversion by : Mo Deng (Ph. D.)
Download or read book Deep Learning with Physical and Power-spectral Priors for Robust Image Inversion written by Mo Deng (Ph. D.) and published by . This book was released on 2020 with total page 182 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational imaging is the class of imaging systems that utilizes inverse algorithms to recover unknown objects of interest from physical measurements. Deep learning has been used in computational imaging, typically in the supervised mode and in an End-to-End fashion. However, treating the machine learning algorithm as a mere black-box is not the most efficient, as the measurement formation process (a.k.a. the forward operator), which depends on the optical apparatus, is known to us. Therefore, it is inefficient to let the neural network to explain, at least partly, the system physics. Also, some prior knowledge of the class of objects of interest can be leveraged to make the training more efficient. The main theme of this thesis is to design more efficient deep learning algorithms with the help of physical and power-spectral priors. We first propose the learning to synthesize by DNN (LS-DNN) scheme, where we propose a dual-channel DNN architecture, each designated to low and high frequency band, respectively, to split, process, and subsequently, learns to recombine low and high frequencies for better inverse conversion. Results show that the LS-DNN scheme largely improves reconstruction quality in many applications, especially in the most severely ill-posed case. In this application, we have implicitly incorporated the system physics through data pre-processing; and the power-spectral prior through the design of the band-splitting configuration. We then propose to use the Phase Extraction Neural Networks (PhENN) trained with perceptual loss, that is based on extracted feature maps from pre-trained classification neural networks, to tackle the problem of low-light phase retrieval under low-light conditions. This essentially transfer the knowledge, or features relevant to classifications, and thus corresponding to human perceptual quality, to the image-transformation network (such as PhENN). We find that the commonly defined perceptual loss need to be refined for the low-light applications, to avoid the strengthened "grid-like" artifacts and achieve superior reconstruction quality. Moreover, we investigate empirically the interplay between the physical and con-tent prior in using deep learning for computational imaging. More specifically, we investigate the effect of training examples to the learning of the underlying physical map and find that using training datasets with higher Shannon entropy is more beneficial to guide the training to correspond better to the system physics and thus the trained mode generalizes better to test examples disjoint from the training set. Conversely, if more restricted examples are used as training examples, the training can be guided to undesirably “remember" to produce the ones similar as those in training, making the cross-domain generalization problematic. Next, we also propose to use deep learning to greatly accelerate the optical diffraction tomography algorithm. Unlike previous algorithms that involve iterative optimization algorithms, we present significant progresses towards 3D refractive index (RI) maps from a single-shot angle-multiplexing interferogram. Last but not least, we propose to use cascaded neural networks to incorporate the system physics directly into the machine learning algorithms, while leaving the trainable architectures to learn to function as the ideal Proximal mapping associated with the efficient regularization of the data. We show that this unrolled scheme significantly outperforms the End-to-End scheme, in low-light imaging applications.
Book Synopsis Phase Retrieval Methods Applied to Coherent Imaging by : Tatiana Latychevskaia
Download or read book Phase Retrieval Methods Applied to Coherent Imaging written by Tatiana Latychevskaia and published by . This book was released on 2014 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Hyperspectral Image Analysis by : Saurabh Prasad
Download or read book Hyperspectral Image Analysis written by Saurabh Prasad and published by Springer Nature. This book was released on 2020-04-27 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book reviews the state of the art in algorithmic approaches addressing the practical challenges that arise with hyperspectral image analysis tasks, with a focus on emerging trends in machine learning and image processing/understanding. It presents advances in deep learning, multiple instance learning, sparse representation based learning, low-dimensional manifold models, anomalous change detection, target recognition, sensor fusion and super-resolution for robust multispectral and hyperspectral image understanding. It presents research from leading international experts who have made foundational contributions in these areas. The book covers a diverse array of applications of multispectral/hyperspectral imagery in the context of these algorithms, including remote sensing, face recognition and biomedicine. This book would be particularly beneficial to graduate students and researchers who are taking advanced courses in (or are working in) the areas of image analysis, machine learning and remote sensing with multi-channel optical imagery. Researchers and professionals in academia and industry working in areas such as electrical engineering, civil and environmental engineering, geosciences and biomedical image processing, who work with multi-channel optical data will find this book useful.
Book Synopsis Digital Holography: Applications and Emerging Technologies by : Peter Wai Ming Tsang
Download or read book Digital Holography: Applications and Emerging Technologies written by Peter Wai Ming Tsang and published by Frontiers Media SA. This book was released on 2023-07-13 with total page 158 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the rapid growth of computing and display technologies, digital holography (DH) has undergone significant advancement in the past two decades. Contemporary research works have enabled holography, a technology which is originally intended for displaying three-dimensional (3-D) images, to be deployed in numerous scientific, engineering, and bio-medical applications. Notably, digital holography has been incorporated into quite a number of contemporary applications, such as, but limited to holographic cryptography, optical metrology, remote sensing and inspection, and more recently, quantum computing. The success attained with DH so far does not limit its development to its current state-of-the-art, but rather research on holography keeps on expanding, with new ideas and methods keep coming up in a sustainable manner. This Research Topic aims to collect representative works from experts in the field, with the aim of providing an insight on the overall picture on digital holography, as well as reporting existing methodologies and emerging technologies that are likely to have strong impact on future research directions. Participating in the Research Topic, either as authors or readers, also facilitates establishing a platform for researchers to network, and to share their knowledge.
Book Synopsis Fourier Ptychographic Imaging by : Guoan Zheng
Download or read book Fourier Ptychographic Imaging written by Guoan Zheng and published by Morgan & Claypool Publishers. This book was released on 2016-06-30 with total page 126 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book demonstrates the concept of Fourier ptychography, a new imaging technique that bypasses the resolution limit of the employed optics. In particular, it transforms the general challenge of high-throughput, high-resolution imaging from one that is coupled to the physical limitations of the optics to one that is solvable through computation. Demonstrated in a tutorial form and providing many MATLAB® simulation examples for the reader, it also discusses the experimental implementation and recent developments of Fourier ptychography. This book will be of interest to researchers and engineers learning simulation techniques for Fourier optics and the Fourier ptychography concept.
Book Synopsis Springer Handbook of Microscopy by : Peter W. Hawkes
Download or read book Springer Handbook of Microscopy written by Peter W. Hawkes and published by Springer Nature. This book was released on 2019-11-02 with total page 1561 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book features reviews by leading experts on the methods and applications of modern forms of microscopy. The recent awards of Nobel Prizes awarded for super-resolution optical microscopy and cryo-electron microscopy have demonstrated the rich scientific opportunities for research in novel microscopies. Earlier Nobel Prizes for electron microscopy (the instrument itself and applications to biology), scanning probe microscopy and holography are a reminder of the central role of microscopy in modern science, from the study of nanostructures in materials science, physics and chemistry to structural biology. Separate chapters are devoted to confocal, fluorescent and related novel optical microscopies, coherent diffractive imaging, scanning probe microscopy, transmission electron microscopy in all its modes from aberration corrected and analytical to in-situ and time-resolved, low energy electron microscopy, photoelectron microscopy, cryo-electron microscopy in biology, and also ion microscopy. In addition to serving as an essential reference for researchers and teachers in the fields such as materials science, condensed matter physics, solid-state chemistry, structural biology and the molecular sciences generally, the Springer Handbook of Microscopy is a unified, coherent and pedagogically attractive text for advanced students who need an authoritative yet accessible guide to the science and practice of microscopy.
Book Synopsis Machine Learning and Artificial Intelligence in Geosciences by :
Download or read book Machine Learning and Artificial Intelligence in Geosciences written by and published by Academic Press. This book was released on 2020-09-22 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Geophysics, Volume 61 - Machine Learning and Artificial Intelligence in Geosciences, the latest release in this highly-respected publication in the field of geophysics, contains new chapters on a variety of topics, including a historical review on the development of machine learning, machine learning to investigate fault rupture on various scales, a review on machine learning techniques to describe fractured media, signal augmentation to improve the generalization of deep neural networks, deep generator priors for Bayesian seismic inversion, as well as a review on homogenization for seismology, and more. Provides high-level reviews of the latest innovations in geophysics Written by recognized experts in the field Presents an essential publication for researchers in all fields of geophysics
Book Synopsis Image Recovery: Theory and Application by : Henry Stark
Download or read book Image Recovery: Theory and Application written by Henry Stark and published by Elsevier. This book was released on 2013-04-25 with total page 565 pages. Available in PDF, EPUB and Kindle. Book excerpt: Image Recovery: Theory and Application focuses on signal recovery and synthesis problems. This book discusses the concepts of image recovery, including regularization, the projection theorem, and the pseudoinverse operator. Comprised of 13 chapters, this volume begins with a review of the basic properties of linear vector spaces and associated operators, followed by a discussion on the Gerchberg-Papoulis algorithm. It then explores image restoration and the basic mathematical theory in image restoration problems. The reader is also introduced to the problem of obtaining artifact-free computed tomographic reconstruction. Other chapters consider the importance of Bayesian approach in the context of medical imaging. In addition, the book discusses the linear programming method, which is particularly important for images with large number of pixels with zero value. Such images are usually found in medical imaging, microscopy, electron microscopy, and astronomy. This book can be a valuable resource to materials scientists, engineers, computed tomography technologists, and astronomers.
Book Synopsis Wavelets and Statistics by : Anestis Antoniadis
Download or read book Wavelets and Statistics written by Anestis Antoniadis and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 407 pages. Available in PDF, EPUB and Kindle. Book excerpt: Despite its short history, wavelet theory has found applications in a remarkable diversity of disciplines: mathematics, physics, numerical analysis, signal processing, probability theory and statistics. The abundance of intriguing and useful features enjoyed by wavelet and wavelet packed transforms has led to their application to a wide range of statistical and signal processing problems. On November 16-18, 1994, a conference on Wavelets and Statistics was held at Villard de Lans, France, organized by the Institute IMAG-LMC, Grenoble, France. The meeting was the 15th in the series of the Rencontres Pranco-Belges des 8tatisticiens and was attended by 74 mathematicians from 12 different countries. Following tradition, both theoretical statistical results and practical contributions of this active field of statistical research were presented. The editors and the local organizers hope that this volume reflects the broad spectrum of the conference. as it includes 21 articles contributed by specialists in various areas in this field. The material compiled is fairly wide in scope and ranges from the development of new tools for non parametric curve estimation to applied problems, such as detection of transients in signal processing and image segmentation. The articles are arranged in alphabetical order by author rather than subject matter. However, to help the reader, a subjective classification of the articles is provided at the end of the book. Several articles of this volume are directly or indirectly concerned with several as pects of wavelet-based function estimation and signal denoising.
Book Synopsis Diffraction, Fourier Optics and Imaging by : Okan K. Ersoy
Download or read book Diffraction, Fourier Optics and Imaging written by Okan K. Ersoy and published by John Wiley & Sons. This book was released on 2006-12-15 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents current theories of diffraction, imaging, and related topics based on Fourier analysis and synthesis techniques, which are essential for understanding, analyzing, and synthesizing modern imaging, optical communications and networking, as well as micro/nano systems. Applications covered include tomography; magnetic resonance imaging; synthetic aperture radar (SAR) and interferometric SAR; optical communications and networking devices; computer-generated holograms and analog holograms; and wireless systems using EM waves.
Book Synopsis Compressed Sensing by : Yonina C. Eldar
Download or read book Compressed Sensing written by Yonina C. Eldar and published by Cambridge University Press. This book was released on 2012-05-17 with total page 557 pages. Available in PDF, EPUB and Kindle. Book excerpt: Compressed sensing is an exciting, rapidly growing field, attracting considerable attention in electrical engineering, applied mathematics, statistics and computer science. This book provides the first detailed introduction to the subject, highlighting theoretical advances and a range of applications, as well as outlining numerous remaining research challenges. After a thorough review of the basic theory, many cutting-edge techniques are presented, including advanced signal modeling, sub-Nyquist sampling of analog signals, non-asymptotic analysis of random matrices, adaptive sensing, greedy algorithms and use of graphical models. All chapters are written by leading researchers in the field, and consistent style and notation are utilized throughout. Key background information and clear definitions make this an ideal resource for researchers, graduate students and practitioners wanting to join this exciting research area. It can also serve as a supplementary textbook for courses on computer vision, coding theory, signal processing, image processing and algorithms for efficient data processing.
