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Data Science Workshop Parkinson Classification And Prediction Using Machine Learning And Deep Learning With Python Gui
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Book Synopsis DATA SCIENCE WORKSHOP: Parkinson Classification and Prediction Using Machine Learning and Deep Learning with Python GUI by : Vivian Siahaan
Download or read book DATA SCIENCE WORKSHOP: Parkinson Classification and Prediction Using Machine Learning and Deep Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-07-26 with total page 373 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this data science workshop focused on Parkinson's disease classification and prediction, we begin by exploring the dataset containing features relevant to the disease. We perform data exploration to understand the structure of the dataset, check for missing values, and gain insights into the distribution of features. Visualizations are used to analyze the distribution of features and their relationship with the target variable, which is whether an individual has Parkinson's disease or not. After data exploration, we preprocess the dataset to prepare it for machine learning models. This involves handling missing values, scaling numerical features, and encoding categorical variables if necessary. We ensure that the dataset is split into training and testing sets to evaluate model performance effectively. With the preprocessed dataset, we move on to the classification task. Using various machine learning algorithms such as Logistic Regression, K-Nearest Neighbors, Decision Trees, Random Forests, Gradient Boosting, Naive Bayes, Adaboost, Extreme Gradient Boosting, Light Gradient Boosting, and Multi-Layer Perceptron (MLP), we train multiple models on the training data. To optimize the hyperparameters of these models, we utilize Grid Search, a technique to exhaustively search for the best combination of hyperparameters. For each machine learning model, we evaluate their performance on the test set using various metrics such as accuracy, precision, recall, and F1-score. These metrics help us understand the model's ability to correctly classify individuals with and without Parkinson's disease. Next, we delve into building an Artificial Neural Network (ANN) for Parkinson's disease prediction. The ANN architecture is designed with input, hidden, and output layers. We utilize the TensorFlow library to construct the neural network with appropriate activation functions, dropout layers, and optimizers. The ANN is trained on the preprocessed data for a fixed number of epochs, and we monitor its training and validation loss and accuracy to ensure proper training. After training the ANN, we evaluate its performance using the same metrics as the machine learning models, comparing its accuracy, precision, recall, and F1-score against the previous models. This comparison helps us understand the benefits and limitations of using deep learning for Parkinson's disease prediction. To provide a user-friendly interface for the classification and prediction process, we design a Python GUI using PyQt. The GUI allows users to load their own dataset, choose data preprocessing options, select machine learning classifiers, train models, and predict using the ANN. The GUI provides visualizations of the data distribution, model performance, and prediction results for better understanding and decision-making. In the GUI, users have the option to choose different data preprocessing techniques, such as raw data, normalization, and standardization, to observe how these techniques impact model performance. The choice of classifiers is also available, allowing users to compare different models and select the one that suits their needs best. Throughout the workshop, we emphasize the importance of proper evaluation metrics and the significance of choosing the right model for Parkinson's disease classification and prediction. We highlight the strengths and weaknesses of each model, enabling users to make informed decisions based on their specific requirements and data characteristics. Overall, this data science workshop provides participants with a comprehensive understanding of Parkinson's disease classification and prediction using machine learning and deep learning techniques. Participants gain hands-on experience in data preprocessing, model training, hyperparameter tuning, and designing a user-friendly GUI for efficient and effective data analysis and prediction.
Book Synopsis The Applied Data Science Workshop On Medical Datasets Using Machine Learning and Deep Learning with Python GUI by : Vivian Siahaan
Download or read book The Applied Data Science Workshop On Medical Datasets Using Machine Learning and Deep Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on with total page 1574 pages. Available in PDF, EPUB and Kindle. Book excerpt: Workshop 1: Heart Failure Analysis and Prediction Using Scikit-Learn, Keras, and TensorFlow with Python GUI Cardiovascular diseases (CVDs) are the number 1 cause of death globally taking an estimated 17.9 million lives each year, which accounts for 31% of all deaths worldwide. Heart failure is a common event caused by CVDs and this dataset contains 12 features that can be used to predict mortality by heart failure. People with cardiovascular disease or who are at high cardiovascular risk (due to the presence of one or more risk factors such as hypertension, diabetes, hyperlipidaemia or already established disease) need early detection and management wherein a machine learning models can be of great help. Dataset used in this project is from Davide Chicco, Giuseppe Jurman. Machine learning can predict survival of patients with heart failure from serum creatinine and ejection fraction alone. BMC Medical Informatics and Decision Making 20, 16 (2020). Attribute information in the dataset are as follows: age: Age; anaemia: Decrease of red blood cells or hemoglobin (boolean); creatinine_phosphokinase: Level of the CPK enzyme in the blood (mcg/L); diabetes: If the patient has diabetes (boolean); ejection_fraction: Percentage of blood leaving the heart at each contraction (percentage); high_blood_pressure: If the patient has hypertension (boolean); platelets: Platelets in the blood (kiloplatelets/mL); serum_creatinine: Level of serum creatinine in the blood (mg/dL); serum_sodium: Level of serum sodium in the blood (mEq/L); sex: Woman or man (binary); smoking: If the patient smokes or not (boolean); time: Follow-up period (days); and DEATH_EVENT: If the patient deceased during the follow-up period (boolean). The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 2: Cervical Cancer Classification and Prediction Using Machine Learning and Deep Learning with Python GUI About 11,000 new cases of invasive cervical cancer are diagnosed each year in the U.S. However, the number of new cervical cancer cases has been declining steadily over the past decades. Although it is the most preventable type of cancer, each year cervical cancer kills about 4,000 women in the U.S. and about 300,000 women worldwide. Numerous studies report that high poverty levels are linked with low screening rates. In addition, lack of health insurance, limited transportation, and language difficulties hinder a poor woman’s access to screening services. Human papilloma virus (HPV) is the main risk factor for cervical cancer. In adults, the most important risk factor for HPV is sexual activity with an infected person. Women most at risk for cervical cancer are those with a history of multiple sexual partners, sexual intercourse at age 17 years or younger, or both. A woman who has never been sexually active has a very low risk for developing cervical cancer. Sexual activity with multiple partners increases the likelihood of many other sexually transmitted infections (chlamydia, gonorrhea, syphilis). Studies have found an association between chlamydia and cervical cancer risk, including the possibility that chlamydia may prolong HPV infection. Therefore, early detection of cervical cancer using machine and deep learning models can be of great help. The dataset used in this project is obtained from UCI Repository and kindly acknowledged. This file contains a List of Risk Factors for Cervical Cancer leading to a Biopsy Examination. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 3: Chronic Kidney Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI Chronic kidney disease is the longstanding disease of the kidneys leading to renal failure. The kidneys filter waste and excess fluid from the blood. As kidneys fail, waste builds up. Symptoms develop slowly and aren't specific to the disease. Some people have no symptoms at all and are diagnosed by a lab test. Medication helps manage symptoms. In later stages, filtering the blood with a machine (dialysis) or a transplant may be required The dataset used in this project was taken over a 2-month period in India with 25 features (eg, red blood cell count, white blood cell count, etc). The target is the 'classification', which is either 'ckd' or 'notckd' - ckd=chronic kidney disease. It contains measures of 24 features for 400 people. Quite a lot of features for just 400 samples. There are 14 categorical features, while 10 are numerical. The dataset needs cleaning: in that it has NaNs and the numeric features need to be forced to floats. Attribute Information: Age(numerical) age in years; Blood Pressure(numerical) bp in mm/Hg; Specific Gravity(categorical) sg - (1.005,1.010,1.015,1.020,1.025); Albumin(categorical) al - (0,1,2,3,4,5); Sugar(categorical) su - (0,1,2,3,4,5); Red Blood Cells(categorical) rbc - (normal,abnormal); Pus Cell (categorical) pc - (normal,abnormal); Pus Cell clumps(categorical) pcc - (present, notpresent); Bacteria(categorical) ba - (present,notpresent); Blood Glucose Random(numerical) bgr in mgs/dl; Blood Urea(numerical) bu in mgs/dl; Serum Creatinine(numerical) sc in mgs/dl; Sodium(numerical) sod in mEq/L; Potassium(numerical) pot in mEq/L; Hemoglobin(numerical) hemo in gms; Packed Cell Volume(numerical); White Blood Cell Count(numerical) wc in cells/cumm; Red Blood Cell Count(numerical) rc in millions/cmm; Hypertension(categorical) htn - (yes,no); Diabetes Mellitus(categorical) dm - (yes,no); Coronary Artery Disease(categorical) cad - (yes,no); Appetite(categorical) appet - (good,poor); Pedal Edema(categorical) pe - (yes,no); Anemia(categorical) ane - (yes,no); and Class (categorical) class - (ckd,notckd). The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 4: Lung Cancer Classification and Prediction Using Machine Learning and Deep Learning with Python GUI The effectiveness of cancer prediction system helps the people to know their cancer risk with low cost and it also helps the people to take the appropriate decision based on their cancer risk status. The data is collected from the website online lung cancer prediction system. Total number of attributes in the dataset is 16, while number of instances is 309. Following are attribute information of dataset: Gender: M(male), F(female); Age: Age of the patient; Smoking: YES=2 , NO=1; Yellow fingers: YES=2 , NO=1; Anxiety: YES=2 , NO=1; Peer_pressure: YES=2 , NO=1; Chronic Disease: YES=2 , NO=1; Fatigue: YES=2 , NO=1; Allergy: YES=2 , NO=1; Wheezing: YES=2 , NO=1; Alcohol: YES=2 , NO=1; Coughing: YES=2 , NO=1; Shortness of Breath: YES=2 , NO=1; Swallowing Difficulty: YES=2 , NO=1; Chest pain: YES=2 , NO=1; and Lung Cancer: YES , NO. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performace of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 5: Alzheimer’s Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI Alzheimer's is a type of dementia that causes problems with memory, thinking and behavior. Symptoms usually develop slowly and get worse over time, becoming severe enough to interfere with daily tasks. Alzheimer's is not a normal part of aging. The greatest known risk factor is increasing age, and the majority of people with Alzheimer's are 65 and older. But Alzheimer's is not just a disease of old age. Approximately 200,000 Americans under the age of 65 have younger-onset Alzheimer’s disease (also known as early-onset Alzheimer’s). The dataset consists of a longitudinal MRI data of 374 subjects aged 60 to 96. Each subject was scanned at least once. Everyone is right-handed. 206 of the subjects were grouped as 'Nondemented' throughout the study. 107 of the subjects were grouped as 'Demented' at the time of their initial visits and remained so throughout the study. 14 subjects were grouped as 'Nondemented' at the time of their initial visit and were subsequently characterized as 'Demented' at a later visit. These fall under the 'Converted' category. Following are some important features in the dataset: EDUC:Years of Education; SES: Socioeconomic Status; MMSE: Mini Mental State Examination; CDR: Clinical Dementia Rating; eTIV: Estimated Total Intracranial Volume; nWBV: Normalize Whole Brain Volume; and ASF: Atlas Scaling Factor. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 6: Parkinson Classification and Prediction Using Machine Learning and Deep Learning with Python GUI The dataset was created by Max Little of the University of Oxford, in collaboration with the National Centre for Voice and Speech, Denver, Colorado, who recorded the speech signals. The original study published the feature extraction methods for general voice disorders. This dataset is composed of a range of biomedical voice measurements from 31 people, 23 with Parkinson's disease (PD). Each column in the table is a particular voice measure, and each row corresponds one of 195 voice recording from these individuals ("name" column). The main aim of the data is to discriminate healthy people from those with PD, according to "status" column which is set to 0 for healthy and 1 for PD. The data is in ASCII CSV format. The rows of the CSV file contain an instance corresponding to one voice recording. There are around six recordings per patient, the name of the patient is identified in the first column. Attribute information of this dataset are as follows: name - ASCII subject name and recording number; MDVP:Fo(Hz) - Average vocal fundamental frequency; MDVP:Fhi(Hz) - Maximum vocal fundamental frequency; MDVP:Flo(Hz) - Minimum vocal fundamental frequency; MDVP:Jitter(%); MDVP:Jitter(Abs); MDVP:RAP; MDVP:PPQ; Jitter:DDP – Several measures of variation in fundamental frequency; MDVP:Shimmer; MDVP:Shimmer(dB); Shimmer:APQ3; Shimmer:APQ5; MDVP:APQ; Shimmer:DDA - Several measures of variation in amplitude; NHR; HNR - Two measures of ratio of noise to tonal components in the voice; status - Health status of the subject (one) - Parkinson's, (zero) – healthy; RPDE,D2 - Two nonlinear dynamical complexity measures; DFA - Signal fractal scaling exponent; and spread1,spread2,PPE - Three nonlinear measures of fundamental frequency variation. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy. WORKSHOP 7: Liver Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI Patients with Liver disease have been continuously increasing because of excessive consumption of alcohol, inhale of harmful gases, intake of contaminated food, pickles and drugs. This dataset was used to evaluate prediction algorithms in an effort to reduce burden on doctors. This dataset contains 416 liver patient records and 167 non liver patient records collected from North East of Andhra Pradesh, India. The "Dataset" column is a class label used to divide groups into liver patient (liver disease) or not (no disease). This data set contains 441 male patient records and 142 female patient records. Any patient whose age exceeded 89 is listed as being of age "90". Columns in the dataset: Age of the patient; Gender of the patient; Total Bilirubin; Direct Bilirubin; Alkaline Phosphotase; Alamine Aminotransferase; Aspartate Aminotransferase; Total Protiens; Albumin; Albumin and Globulin Ratio; and Dataset: field used to split the data into two sets (patient with liver disease, or no disease). The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy.
Book Synopsis Artificial Intelligence in Surgery: Understanding the Role of AI in Surgical Practice by : Daniel A. Hashimoto
Download or read book Artificial Intelligence in Surgery: Understanding the Role of AI in Surgical Practice written by Daniel A. Hashimoto and published by McGraw Hill Professional. This book was released on 2021-03-08 with total page 432 pages. Available in PDF, EPUB and Kindle. Book excerpt: Build a solid foundation in surgical AI with this engaging, comprehensive guide for AI novices Machine learning, neural networks, and computer vision in surgical education, practice, and research will soon be de rigueur. Written for surgeons without a background in math or computer science, Artificial Intelligence in Surgery provides everything you need to evaluate new technologies and make the right decisions about bringing AI into your practice. Comprehensive and easy to understand, this first-of-its-kind resource illustrates the use of AI in surgery through real-life examples. It covers the issues most relevant to your practice, including: Neural Networks and Deep Learning Natural Language Processing Computer Vision Surgical Education and Simulation Preoperative Risk Stratification Intraoperative Video Analysis OR Black Box and Tracking of Intraoperative Events Artificial Intelligence and Robotic Surgery Natural Language Processing for Clinical Documentation Leveraging Artificial Intelligence in the EMR Ethical Implications of Artificial Intelligence in Surgery Artificial Intelligence and Health Policy Assessing Strengths and Weaknesses of Artificial Intelligence Research Finally, the appendix includes a detailed glossary of terms and important learning resources and techniques―all of which helps you interpret claims made by studies or companies using AI.
Book Synopsis The Democratization of Artificial Intelligence by : Andreas Sudmann
Download or read book The Democratization of Artificial Intelligence written by Andreas Sudmann and published by transcript Verlag. This book was released on 2019-10-31 with total page 335 pages. Available in PDF, EPUB and Kindle. Book excerpt: After a long time of neglect, Artificial Intelligence is once again at the center of most of our political, economic, and socio-cultural debates. Recent advances in the field of Artifical Neural Networks have led to a renaissance of dystopian and utopian speculations on an AI-rendered future. Algorithmic technologies are deployed for identifying potential terrorists through vast surveillance networks, for producing sentencing guidelines and recidivism risk profiles in criminal justice systems, for demographic and psychographic targeting of bodies for advertising or propaganda, and more generally for automating the analysis of language, text, and images. Against this background, the aim of this book is to discuss the heterogenous conditions, implications, and effects of modern AI and Internet technologies in terms of their political dimension: What does it mean to critically investigate efforts of net politics in the age of machine learning algorithms?
Book Synopsis Machine Learning with Health Care Perspective by : Vishal Jain
Download or read book Machine Learning with Health Care Perspective written by Vishal Jain and published by Springer Nature. This book was released on 2020-03-09 with total page 418 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique book introduces a variety of techniques designed to represent, enhance and empower multi-disciplinary and multi-institutional machine learning research in healthcare informatics. Providing a unique compendium of current and emerging machine learning paradigms for healthcare informatics, it reflects the diversity, complexity, and the depth and breadth of this multi-disciplinary area. Further, it describes techniques for applying machine learning within organizations and explains how to evaluate the efficacy, suitability, and efficiency of such applications. Featuring illustrative case studies, including how chronic disease is being redefined through patient-led data learning, the book offers a guided tour of machine learning algorithms, architecture design, and applications of learning in healthcare challenges.
Book Synopsis Networks in Cell Biology by : Mark Buchanan
Download or read book Networks in Cell Biology written by Mark Buchanan and published by Cambridge University Press. This book was released on 2010-05-13 with total page 282 pages. Available in PDF, EPUB and Kindle. Book excerpt: Key introductory text for graduate students and researchers in physics, biology and biochemistry.
Book Synopsis Pattern Recognition and Machine Learning by : Christopher M. Bishop
Download or read book Pattern Recognition and Machine Learning written by Christopher M. Bishop and published by Springer. This book was released on 2016-08-23 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first textbook on pattern recognition to present the Bayesian viewpoint. The book presents approximate inference algorithms that permit fast approximate answers in situations where exact answers are not feasible. It uses graphical models to describe probability distributions when no other books apply graphical models to machine learning. No previous knowledge of pattern recognition or machine learning concepts is assumed. Familiarity with multivariate calculus and basic linear algebra is required, and some experience in the use of probabilities would be helpful though not essential as the book includes a self-contained introduction to basic probability theory.
Book Synopsis Data Science and Predictive Analytics by : Ivo D. Dinov
Download or read book Data Science and Predictive Analytics written by Ivo D. Dinov and published by Springer Nature. This book was released on 2023-02-16 with total page 940 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook integrates important mathematical foundations, efficient computational algorithms, applied statistical inference techniques, and cutting-edge machine learning approaches to address a wide range of crucial biomedical informatics, health analytics applications, and decision science challenges. Each concept in the book includes a rigorous symbolic formulation coupled with computational algorithms and complete end-to-end pipeline protocols implemented as functional R electronic markdown notebooks. These workflows support active learning and demonstrate comprehensive data manipulations, interactive visualizations, and sophisticated analytics. The content includes open problems, state-of-the-art scientific knowledge, ethical integration of heterogeneous scientific tools, and procedures for systematic validation and dissemination of reproducible research findings. Complementary to the enormous challenges related to handling, interrogating, and understanding massive amounts of complex structured and unstructured data, there are unique opportunities that come with access to a wealth of feature-rich, high-dimensional, and time-varying information. The topics covered in Data Science and Predictive Analytics address specific knowledge gaps, resolve educational barriers, and mitigate workforce information-readiness and data science deficiencies. Specifically, it provides a transdisciplinary curriculum integrating core mathematical principles, modern computational methods, advanced data science techniques, model-based machine learning, model-free artificial intelligence, and innovative biomedical applications. The book’s fourteen chapters start with an introduction and progressively build foundational skills from visualization to linear modeling, dimensionality reduction, supervised classification, black-box machine learning techniques, qualitative learning methods, unsupervised clustering, model performance assessment, feature selection strategies, longitudinal data analytics, optimization, neural networks, and deep learning. The second edition of the book includes additional learning-based strategies utilizing generative adversarial networks, transfer learning, and synthetic data generation, as well as eight complementary electronic appendices. This textbook is suitable for formal didactic instructor-guided course education, as well as for individual or team-supported self-learning. The material is presented at the upper-division and graduate-level college courses and covers applied and interdisciplinary mathematics, contemporary learning-based data science techniques, computational algorithm development, optimization theory, statistical computing, and biomedical sciences. The analytical techniques and predictive scientific methods described in the book may be useful to a wide range of readers, formal and informal learners, college instructors, researchers, and engineers throughout the academy, industry, government, regulatory, funding, and policy agencies. The supporting book website provides many examples, datasets, functional scripts, complete electronic notebooks, extensive appendices, and additional materials.
Book Synopsis Biomedical Natural Language Processing by : Kevin Bretonnel Cohen
Download or read book Biomedical Natural Language Processing written by Kevin Bretonnel Cohen and published by John Benjamins Publishing Company. This book was released on 2014-02-15 with total page 174 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biomedical Natural Language Processing is a comprehensive tour through the classic and current work in the field. It discusses all subjects from both a rule-based and a machine learning approach, and also describes each subject from the perspective of both biological science and clinical medicine. The intended audience is readers who already have a background in natural language processing, but a clear introduction makes it accessible to readers from the fields of bioinformatics and computational biology, as well. The book is suitable as a reference, as well as a text for advanced courses in biomedical natural language processing and text mining.
Book Synopsis THE APPLIED DATA SCIENCE WORKSHOP: Prostate Cancer Classification and Recognition Using Machine Learning and Deep Learning with Python GUI by : Vivian Siahaan
Download or read book THE APPLIED DATA SCIENCE WORKSHOP: Prostate Cancer Classification and Recognition Using Machine Learning and Deep Learning with Python GUI written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2023-07-19 with total page 357 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Applied Data Science Workshop on Prostate Cancer Classification and Recognition using Machine Learning and Deep Learning with Python GUI involved several steps and components. The project aimed to analyze prostate cancer data, explore the features, develop machine learning models, and create a graphical user interface (GUI) using PyQt5. The project began with data exploration, where the prostate cancer dataset was examined to understand its structure and content. Various statistical techniques were employed to gain insights into the data, such as checking the dimensions, identifying missing values, and examining the distribution of the target variable. The next step involved exploring the distribution of features in the dataset. Visualizations were created to analyze the characteristics and relationships between different features. Histograms, scatter plots, and correlation matrices were used to uncover patterns and identify potential variables that may contribute to the classification of prostate cancer. Machine learning models were then developed to classify prostate cancer based on the available features. Several algorithms, including Logistic Regression, K-Nearest Neighbors, Decision Trees, Random Forests, Gradient Boosting, Naive Bayes, Adaboost, Extreme Gradient Boosting, Light Gradient Boosting, and Multi-Layer Perceptron (MLP), were implemented. Each model was trained and evaluated using appropriate techniques such as cross-validation and grid search for hyperparameter tuning. The performance of each machine learning model was assessed using evaluation metrics such as accuracy, precision, recall, and F1-score. These metrics provided insights into the effectiveness of the models in accurately classifying prostate cancer cases. Model comparison and selection were based on their performance and the specific requirements of the project. In addition to the machine learning models, a deep learning model based on an Artificial Neural Network (ANN) was implemented. The ANN architecture consisted of multiple layers, including input, hidden, and output layers. The ANN model was trained using the dataset, and its performance was evaluated using accuracy and loss metrics. To provide a user-friendly interface for the project, a GUI was designed using PyQt, a Python library for creating desktop applications. The GUI allowed users to interact with the machine learning models and perform tasks such as selecting the prediction method, loading data, training models, and displaying results. The GUI included various graphical components such as buttons, combo boxes, input fields, and plot windows. These components were designed to facilitate data loading, model training, and result visualization. Users could choose the prediction method, view accuracy scores, classification reports, and confusion matrices, and explore the predicted values compared to the actual values. The GUI also incorporated interactive features such as real-time updates of prediction results based on user selections and dynamic plot generation for visualizing model performance. Users could switch between different prediction methods, observe changes in accuracy, and examine the history of training loss and accuracy through plotted graphs. Data preprocessing techniques, such as standardization and normalization, were applied to ensure the consistency and reliability of the machine learning and deep learning models. The dataset was divided into training and testing sets to assess model performance on unseen data and detect overfitting or underfitting. Model persistence was implemented to save the trained machine learning and deep learning models to disk, allowing for easy retrieval and future use. The saved models could be loaded and utilized within the GUI for prediction tasks without the need for retraining. Overall, the Applied Data Science Workshop on Prostate Cancer Classification and Recognition provided a comprehensive framework for analyzing prostate cancer data, developing machine learning and deep learning models, and creating an interactive GUI. The project aimed to assist in the accurate classification and recognition of prostate cancer cases, facilitating informed decision-making and potentially contributing to improved patient outcomes.
Book Synopsis Machine Learning Applications Using Python by : Puneet Mathur
Download or read book Machine Learning Applications Using Python written by Puneet Mathur and published by Apress. This book was released on 2018-12-12 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt: Gain practical skills in machine learning for finance, healthcare, and retail. This book uses a hands-on approach by providing case studies from each of these domains: you’ll see examples that demonstrate how to use machine learning as a tool for business enhancement. As a domain expert, you will not only discover how machine learning is used in finance, healthcare, and retail, but also work through practical case studies where machine learning has been implemented. Machine Learning Applications Using Python is divided into three sections, one for each of the domains (healthcare, finance, and retail). Each section starts with an overview of machine learning and key technological advancements in that domain. You’ll then learn more by using case studies on how organizations are changing the game in their chosen markets. This book has practical case studies with Python code and domain-specific innovative ideas for monetizing machine learning. What You Will LearnDiscover applied machine learning processes and principles Implement machine learning in areas of healthcare, finance, and retail Avoid the pitfalls of implementing applied machine learning Build Python machine learning examples in the three subject areas Who This Book Is For Data scientists and machine learning professionals.
Book Synopsis Advances in Signal Processing and Intelligent Recognition Systems by : Sabu M. Thampi
Download or read book Advances in Signal Processing and Intelligent Recognition Systems written by Sabu M. Thampi and published by Springer. This book was released on 2021-02-07 with total page 376 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 6th International Symposium on Advances in Signal Processing and Intelligent Recognition Systems, SIRS 2020, held in Chennai, India, in October 2020. Due to the COVID-19 pandemic the conference was held online. The 22 revised full papers and 5 revised short papers presented were carefully reviewed and selected from 50 submissions. The papers cover wide research fields including information retrieval, human-computer interaction (HCI), information extraction, speech recognition.
Book Synopsis Semisupervised Learning for Computational Linguistics by : Steven Abney
Download or read book Semisupervised Learning for Computational Linguistics written by Steven Abney and published by CRC Press. This book was released on 2007-09-17 with total page 322 pages. Available in PDF, EPUB and Kindle. Book excerpt: The rapid advancement in the theoretical understanding of statistical and machine learning methods for semisupervised learning has made it difficult for nonspecialists to keep up to date in the field. Providing a broad, accessible treatment of the theory as well as linguistic applications, Semisupervised Learning for Computational Linguistics offer
Book Synopsis Advances in Signal Processing and Intelligent Recognition Systems by : Sabu M. Thampi
Download or read book Advances in Signal Processing and Intelligent Recognition Systems written by Sabu M. Thampi and published by Springer Nature. This book was released on 2020-04-30 with total page 414 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 5th International Symposium on Advances in Signal Processing and Intelligent Recognition Systems, SIRS 2019, held in Trivandrum, India, in December 2019. The 19 revised full papers and 8 revised short papers presented were carefully reviewed and selected from 63 submissions. The papers cover wide research fields including information retrieval, human-computer interaction (HCI), information extraction, speech recognition.
Book Synopsis Introduction to Arabic Natural Language Processing by : Nizar Y. Habash
Download or read book Introduction to Arabic Natural Language Processing written by Nizar Y. Habash and published by Morgan & Claypool Publishers. This book was released on 2010 with total page 186 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides system developers and researchers in natural language processing and computational linguistics with the necessary background information for working with the Arabic language. The goal is to introduce Arabic linguistic phenomena and review the state-of-the-art in Arabic processing. The book discusses Arabic script, phonology, orthography, morphology, syntax and semantics, with a final chapter on machine translation issues. The chapter sizes correspond more or less to what is linguistically distinctive about Arabic, with morphology getting the lion's share, followed by Arabic script. No previous knowledge of Arabic is needed. This book is designed for computer scientists and linguists alike. The focus of the book is on Modern Standard Arabic; however, notes on practical issues related to Arabic dialects and languages written in the Arabic script are presented in different chapters. Table of Contents: What is "Arabic"? / Arabic Script / Arabic Phonology and Orthography / Arabic Morphology / Computational Morphology Tasks / Arabic Syntax / A Note on Arabic Semantics / A Note on Arabic and Machine Translation
Book Synopsis Quantitative Bioimaging by : Raimund J. Ober
Download or read book Quantitative Bioimaging written by Raimund J. Ober and published by CRC Press. This book was released on 2020-12-15 with total page 693 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative bioimaging is a broad interdisciplinary field that exploits tools from biology, chemistry, optics, and statistical data analysis for the design and implementation of investigations of biological processes. Instead of adopting the traditional approach of focusing on just one of the component disciplines, this textbook provides a unique introduction to quantitative bioimaging that presents all of the disciplines in an integrated manner. The wide range of topics covered include basic concepts in molecular and cellular biology, relevant aspects of antibody technology, instrumentation and experimental design in fluorescence microscopy, introductory geometrical optics and diffraction theory, and parameter estimation and information theory for the analysis of stochastic data. Key Features: Comprises four parts, the first of which provides an overview of the topics that are developed from fundamental principles to more advanced levels in the other parts. Presents in the second part an in-depth introduction to the relevant background in molecular and cellular biology and in physical chemistry, which should be particularly useful for students without a formal background in these subjects. Provides in the third part a detailed treatment of microscopy techniques and optics, again starting from basic principles. Introduces in the fourth part modern statistical approaches to the determination of parameters of interest from microscopy data, in particular data generated by single molecule microscopy experiments. Uses two topics related to protein trafficking (transferrin trafficking and FcRn-mediated antibody trafficking) throughout the text to motivate and illustrate microscopy techniques. An online appendix providing the background and derivations for various mathematical results presented or used in the text is available at http://www.routledge.com/9781138598980.
Book Synopsis PYTHON GUI PROJECTS WITH MACHINE LEARNING AND DEEP LEARNING by : Vivian Siahaan
Download or read book PYTHON GUI PROJECTS WITH MACHINE LEARNING AND DEEP LEARNING written by Vivian Siahaan and published by BALIGE PUBLISHING. This book was released on 2022-01-16 with total page 917 pages. Available in PDF, EPUB and Kindle. Book excerpt: PROJECT 1: THE APPLIED DATA SCIENCE WORKSHOP: Prostate Cancer Classification and Recognition Using Machine Learning and Deep Learning with Python GUI Prostate cancer is cancer that occurs in the prostate. The prostate is a small walnut-shaped gland in males that produces the seminal fluid that nourishes and transports sperm. Prostate cancer is one of the most common types of cancer. Many prostate cancers grow slowly and are confined to the prostate gland, where they may not cause serious harm. However, while some types of prostate cancer grow slowly and may need minimal or even no treatment, other types are aggressive and can spread quickly. The dataset used in this project consists of 100 patients which can be used to implement the machine learning and deep learning algorithms. The dataset consists of 100 observations and 10 variables (out of which 8 numeric variables and one categorical variable and is ID) which are as follows: Id, Radius, Texture, Perimeter, Area, Smoothness, Compactness, Diagnosis Result, Symmetry, and Fractal Dimension. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy. PROJECT 2: THE APPLIED DATA SCIENCE WORKSHOP: Urinary Biomarkers Based Pancreatic Cancer Classification and Prediction Using Machine Learning with Python GUI Pancreatic cancer is an extremely deadly type of cancer. Once diagnosed, the five-year survival rate is less than 10%. However, if pancreatic cancer is caught early, the odds of surviving are much better. Unfortunately, many cases of pancreatic cancer show no symptoms until the cancer has spread throughout the body. A diagnostic test to identify people with pancreatic cancer could be enormously helpful. In a paper by Silvana Debernardi and colleagues, published this year in the journal PLOS Medicine, a multi-national team of researchers sought to develop an accurate diagnostic test for the most common type of pancreatic cancer, called pancreatic ductal adenocarcinoma or PDAC. They gathered a series of biomarkers from the urine of three groups of patients: Healthy controls, Patients with non-cancerous pancreatic conditions, like chronic pancreatitis, and Patients with pancreatic ductal adenocarcinoma. When possible, these patients were age- and sex-matched. The goal was to develop an accurate way to identify patients with pancreatic cancer. The key features are four urinary biomarkers: creatinine, LYVE1, REG1B, and TFF1. Creatinine is a protein that is often used as an indicator of kidney function. YVLE1 is lymphatic vessel endothelial hyaluronan receptor 1, a protein that may play a role in tumor metastasis. REG1B is a protein that may be associated with pancreas regeneration. TFF1 is trefoil factor 1, which may be related to regeneration and repair of the urinary tract. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, and MLP classifier. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy. PROJECT 3: DATA SCIENCE CRASH COURSE: Voice Based Gender Classification and Prediction Using Machine Learning and Deep Learning with Python GUI This dataset was created to identify a voice as male or female, based upon acoustic properties of the voice and speech. The dataset consists of 3,168 recorded voice samples, collected from male and female speakers. The voice samples are pre-processed by acoustic analysis in R using the seewave and tuneR packages, with an analyzed frequency range of 0hz-280hz (human vocal range). The following acoustic properties of each voice are measured and included within the CSV: meanfreq: mean frequency (in kHz); sd: standard deviation of frequency; median: median frequency (in kHz); Q25: first quantile (in kHz); Q75: third quantile (in kHz); IQR: interquantile range (in kHz); skew: skewness; kurt: kurtosis; sp.ent: spectral entropy; sfm: spectral flatness; mode: mode frequency; centroid: frequency centroid (see specprop); peakf: peak frequency (frequency with highest energy); meanfun: average of fundamental frequency measured across acoustic signal; minfun: minimum fundamental frequency measured across acoustic signal; maxfun: maximum fundamental frequency measured across acoustic signal; meandom: average of dominant frequency measured across acoustic signal; mindom: minimum of dominant frequency measured across acoustic signal; maxdom: maximum of dominant frequency measured across acoustic signal; dfrange: range of dominant frequency measured across acoustic signal; modindx: modulation index. Calculated as the accumulated absolute difference between adjacent measurements of fundamental frequencies divided by the frequency range; and label: male or female. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy. PROJECT 4: DATA SCIENCE CRASH COURSE: Thyroid Disease Classification and Prediction Using Machine Learning and Deep Learning with Python GUI Thyroid disease is a general term for a medical condition that keeps your thyroid from making the right amount of hormones. Thyroid typically makes hormones that keep body functioning normally. When the thyroid makes too much thyroid hormone, body uses energy too quickly. The two main types of thyroid disease are hypothyroidism and hyperthyroidism. Both conditions can be caused by other diseases that impact the way the thyroid gland works. Dataset used in this project was from Garavan Institute Documentation as given by Ross Quinlan 6 databases from the Garavan Institute in Sydney, Australia. Approximately the following for each database: 2800 training (data) instances and 972 test instances. This dataset contains plenty of missing data, while 29 or so attributes, either Boolean or continuously-valued. The models used in this project are K-Nearest Neighbor, Random Forest, Naive Bayes, Logistic Regression, Decision Tree, Support Vector Machine, Adaboost, LGBM classifier, Gradient Boosting, XGB classifier, MLP classifier, and CNN 1D. Finally, you will develop a GUI using PyQt5 to plot boundary decision, ROC, distribution of features, feature importance, cross validation score, and predicted values versus true values, confusion matrix, learning curve, performance of the model, scalability of the model, training loss, and training accuracy.
