Read Books Online and Download eBooks, EPub, PDF, Mobi, Kindle, Text Full Free.
Characterization Of The Biological Role Of A Putative Porphyromonas Gingivalis Rna Binding Protein
Download Characterization Of The Biological Role Of A Putative Porphyromonas Gingivalis Rna Binding Protein full books in PDF, epub, and Kindle. Read online Characterization Of The Biological Role Of A Putative Porphyromonas Gingivalis Rna Binding Protein ebook anywhere anytime directly on your device. Fast Download speed and no annoying ads. We cannot guarantee that every ebooks is available!
Book Synopsis Characterization of the Biological Role of a Putative Porphyromonas Gingivalis RNA-binding Protein by : Romana Cvitkovic
Download or read book Characterization of the Biological Role of a Putative Porphyromonas Gingivalis RNA-binding Protein written by Romana Cvitkovic and published by . This book was released on 2014 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Porphyromonas gingivalis, a gram-negative anaerobic bacterium, is a major etiological agent in the initiation and progression of severe forms of periodontal disease. Oral bacteria like P. gingivalis are subject to continually changing conditions as a consequence of host eating, oral hygiene patterns and subgingival temperatures. As such survival requires an adaptive response to environmental cues, but little is known about the mechanism by which P. gingivalis controls co- and post-transcriptional regulation of RNA levels and potentially protein expression. RNA-binding proteins (RBPs) are evolutionarily conserved across species and are involved in such regulatory mechanisms. However, P. gingivalis currently has no identified RBP. Recently, PG0627 has become an ideal candidate for a putative RBP due to its sequence homology to RBPs across various species. By characterizing PG0627, we can gain better insight into the function of this hypothetical protein and determine if it indeed behaves like an RNA-binding protein. A host of studies were done on a PG0627-deficient P. gingivalis mutant, V3139, in order to determine the biological role of the protein encoded by the gene. Our bioinformatics analysis indicated that PG0627 had sequence homology to several RNA recognition motifs or RBPs. Furthermore, our PG0627-deficient mutant, when compared to W83, exhibited decreased cell-associated iron content, decreased total interactions and invasions with eukaryotic cells, and decreased protease activity. Conversely, our PG0627-deficient mutant displayed slightly increased growth in the presence of nitrosative stress, and in hemin-depleted conditions. In conclusion, our results support that PG0627 is a valid candidate for an RNA-binding protein in P. gingivalis.
Book Synopsis Characterization of Putative Porphyromonas Gingivalis RNA-binding Proteins by : Holly Dwyer
Download or read book Characterization of Putative Porphyromonas Gingivalis RNA-binding Proteins written by Holly Dwyer and published by . This book was released on 2014 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Porphyromonas gingivalis (P. gingivalis) is a gram-negative, anaerobic bacterium recognized as a major player in progression of periodontal disease. P. gingivalis survives in the oral cavity while being exposed to dynamic environmental conditions such as pH, temperature, nutrient availability and host immune responses such as oxygen tension and nitrosative stress. Survival and pathogenesis of P. gingivalis in the oral cavity require mechanisms to regulate gene expression in response to the extracellular signals. Little is known about the regulatory mechanisms of P. gingivalis in the oral cavity, so it is important to investigate and characterize these regulatory mechanisms. Adaptation to environmental cues using riboregulation is a significant mechanism for post-transcriptional regulation in bacteria. Using bioinformatics, we have identified a putative RNA-binding protein in P. gingivalis: RBP. Bioinformatic studies have led to the selection of HU[beta] and HU[alpha]nucleoid associated proteins as controls for RNA binding. I hypothesize that the candidate proteins RBP, HU[beta] and HU[alpha]bind RNA in P. gingivalis. The first aim is to show that RBP, HU[beta] and HU[alpha]bind RNA. Using electrophoretic mobility shift assays with IRE RNA and synthesized RNA motifs, I have confirmed that the proteins do bind RNA. The second aim is to isolate and sequence the P. gingivalis RNA that bind to RBP, HU[beta] and HU[alpha]. I have isolated the RNAs that bound the proteins and determined identity of the RNA using high throughput sequencing. Finally, I have identified an antibody that specifically binds RBP to use for in vivo immunoprecipitation of RNA-protein complexes from P. gingivalis. In conclusion RBP, HU[beta] and HU[alpha]are novel RNA binding proteins in P. gingivalis, and further investigation of these proteins is necessary to understand the mechanisms of gene regulation in P. gingivalis.
Book Synopsis Biochemical Analysis of Putative RNA-binding Proteins in Porphyromonas Gingivalis by : Jacob Mirpanah
Download or read book Biochemical Analysis of Putative RNA-binding Proteins in Porphyromonas Gingivalis written by Jacob Mirpanah and published by . This book was released on 2018 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: RNA-Binding Proteins (RBPs) play important regulatory roles in countless cellular processes. Often via the induction of a structural change in RNA's secondary structure, RBPs are known to modulate protein expression through post-transcriptional regulation. In Escherichia coli, such RBPs have been thoroughly studied and shown to display differential expression throughout the bacterial life cycle; suggesting their importance in prompting different events in the bacterial cell. Further, RNA- and DNA-recognition domains have been characterized in proteins Hub as well as RBP in E.coli and their nucleic acid ligands sequenced. It was our aim to extend this level of information to Hub and RBP as they exist in a main etiological agent in periodontal disease; Porphyromonas gingivalis. Using quantitative PCR expression analysis, we saw a general upregulation of both proteins in the logarithmic phase as compared to the stationary phase. This upregulation was most pronounced in PG0627, the putative analog of E. coli RBP in P. gingivalis. Further, Electrophoretic Mobility Shift Assays suggest sequence specific interaction of PG0627 to RNA. Uninhibited and Inhibited mobility assays seem to confirm that PG0627 binds with great specificity to a conserved RNA sequence. Quantitative measure of interaction came in the form of fluorescence anisotropy, which produced a Dissociation Constant (Kd) of approximately 53 nM; suggesting a high degree of affinity. Lastly, a mutant was generated in order to produce high quality RNA libraries to be sequenced through the Illumina MiSeq system. Sequencing data is still incoming.
Book Synopsis The Characterization of Pg0228 in Porphyromonas Gingivalis W83 by : Courtney Schlenker
Download or read book The Characterization of Pg0228 in Porphyromonas Gingivalis W83 written by Courtney Schlenker and published by . This book was released on 2011 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Periodontitis affects 10 to 15 percent of most adult populations and can contribute to numerous systemic diseases. Porphyromonas gingivalis, a gram-negative anaerobic bacterium, is a recognized prime causative agent in periodontitis. Studies have shown a number of small non-coding RNAs (sRNAs) have been related to bacterial virulence. Many of these sRNAs require the facilitation of the bacterial Sm-like protein, Hfq, for optimum function. Hfq is a RNA chaperone involved in RNA stability, sRNA function, and polyadenylation. Mutants lacking in Hfq often show pleiotropic phenotypes, although the extent and severity of hfq null phenotypes is often species-specific. Hfq has been encoded by nearly half of eubacteria, including pathogens. Based on a standard BLAST search, hfq has not been detected in P. gingivalis. It is highly likely, however, that the bacterium possesses an Hfq homologue due to its importance as an overall RNA cofactor. The P. gingivalis hypothetical protein, PG0228, possesses the Sm-like protein motif, thus we believe it is an excellent Hfq candidate. Our goal was to characterize PG0228 so we can gain a better insight into the function of this hypothetical protein and determine if it indeed behaves like Hfq. Microarray analysis, growth studies, and a survival study were done on a [delta]0228 mutant to determine the biological role of the protein encoded by PG0228. PG0228 was also tagged in vivo in order to determine if the protein binds to RNA. Our results show P. gingivalis deficient in PG0228 show significant similarities to other bacterium deficient in hfq. The [delta]0228 strain showed significant sensitivity to host defense mechanisms and an overall gene regulation in 15% of the genome. In addition, the mutant is viable but produces a lower final cell density. Thus, we believe PG0228 is an excellent Hfq candidate, and suggest further studies will show PG0228 is an Hfq homologue.
Book Synopsis Characterization of a Putative TonB Deficient Porphyromonas Gingivalis Mutant by : Soheil Rostami
Download or read book Characterization of a Putative TonB Deficient Porphyromonas Gingivalis Mutant written by Soheil Rostami and published by . This book was released on 2014 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Porphorymonas gingivalis is one of the major bacterial pathogens responsible for the initiation and progression of periodontal disease. The bacterium requires hemin uptake for its growth and has developed sophisticated mechanisms to extract hemin from hemin containing proteins in the oral cavity. Hemin first binds to receptors on the surface of P. gingivalis and is then taken up in an energy dependent manner. TonB is an inner membrane bound protein that spans the periplasm and is believed to be involved in the passage of hemin through the double membrane of P. gingivalis. However, the TonB protein in P. gingivalis is yet to be identified. We identified PG0785 as a possible P. gingivalis TonB based on its bioinformatics data showing similarity to other known TonB proteins. We generated a P. gingivalis mutant lacking a functional PG0785 and then characterized the mutant to determine the role of PG0785. We performed metal content and protease assays, virulence studies and transcriptional and translational analysis of our mutant and wild type P. gingivalis strains. Phenotypic studies showed that the mutant cannot accumulate hemin on its surface. The mutant has significantly lower levels of iron compared to wild type based on metal content assays. The mutant also has significantly lower protease activity compared to the wild type. Virulence studies showed that the mutant interacted and invaded eukaryotic cells at much lower levels than the wild type. These results allowed us to speculate that PG0785 is very important in binding of hemin to surface of P. gingivalis. PG0785 also plays an important role in iron uptake, protease activity and virulence of P. gingivalis. Transcriptional and translational analyses have shown that numerous TonB related genes, metal uptake genes, hemin uptake genes and genes related to virulence have been differentially regulated in the mutant lacking a functional PG0785 gene compared to the wild type strain. In conclusion we believe that based on our results PG0785 is a putative P. gingivalis TonB protein that plays a significant role in the biology of P. gingivalis.
Download or read book The Prokaryotes written by Stanley Falkow and published by Springer Science & Business Media. This book was released on 2006-11-14 with total page 1105 pages. Available in PDF, EPUB and Kindle. Book excerpt: The revised Third Edition of The Prokaryotes, acclaimed as a classic reference in the field, offers new and updated articles by experts from around the world on taxa of relevance to medicine, ecology and industry. Entries combine phylogenetic and systematic data with insights into genetics, physiology and application. Existing entries have been revised to incorporate rapid progress and technological innovation. The new edition improves on the lucid presentation, logical layout and abundance of illustrations that readers rely on, adding color illustration throughout. Expanded to seven volumes in its print form, the new edition adds a new, searchable online version.
Book Synopsis Polymicrobial Diseases by : Kim A. Brogden
Download or read book Polymicrobial Diseases written by Kim A. Brogden and published by . This book was released on 2002 with total page 460 pages. Available in PDF, EPUB and Kindle. Book excerpt: Polymicrobial diseases, those involving more than one etiologic agent, are more common than is generally realized and include respiratory diseases, gastroenteritis, conjunctivitis, keratitis, hepatitis, periodontal diseases, multiple sclerosis, genital infections, intra -- abdominal infections, and pertussis.
Book Synopsis Characterization, Properties and Applications by : Tracey Rouault
Download or read book Characterization, Properties and Applications written by Tracey Rouault and published by Walter de Gruyter GmbH & Co KG. This book was released on 2017-08-21 with total page 547 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume on iron-sulfur proteins includes chapters that describe the initial discovery of iron-sulfur proteins in the 1960s to elucidation of the roles of iron sulfur clusters as prosthetic groups of enzymes, such as the citric acid cycle enzyme, aconitase, and numerous other proteins, ranging from nitrogenase to DNA repair proteins. The capacity of iron sulfur clusters to accept and delocalize single electrons is explained by basic chemical principles, which illustrate why iron sulfur proteins are uniquely suitable for electron transport and other activities. Techniques used for detection and stabilization of iron-sulfur clusters, including EPR and Mossbauer spectroscopies, are discussed because they are important for characterizing unrecognized and elusive iron sulfur proteins. Recent insights into how nitrogenase works have arisen from multiple advances, described here, including studies of high-resolution crystal structures.
Book Synopsis Advances in Bacteroidaceae Research and Application: 2011 Edition by :
Download or read book Advances in Bacteroidaceae Research and Application: 2011 Edition written by and published by ScholarlyEditions. This book was released on 2012-01-09 with total page 37 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Bacteroidaceae Research and Application: 2011 Edition is a ScholarlyPaper™ that delivers timely, authoritative, and intensively focused information about Bacteroidaceae in a compact format. The editors have built Advances in Bacteroidaceae Research and Application: 2011 Edition on the vast information databases of ScholarlyNews.™ You can expect the information about Bacteroidaceae in this eBook to be deeper than what you can access anywhere else, as well as consistently reliable, authoritative, informed, and relevant. The content of Advances in Bacteroidaceae Research and Application: 2011 Edition has been produced by the world’s leading scientists, engineers, analysts, research institutions, and companies. All of the content is from peer-reviewed sources, and all of it is written, assembled, and edited by the editors at ScholarlyEditions™ and available exclusively from us. You now have a source you can cite with authority, confidence, and credibility. More information is available at http://www.ScholarlyEditions.com/.
Author :Paul E. Kolenbrander Publisher :American Society for Microbiology Press ISBN 13 :1555815030 Total Pages :617 pages Book Rating :4.5/5 (558 download)
Book Synopsis Oral Microbial Communities by : Paul E. Kolenbrander
Download or read book Oral Microbial Communities written by Paul E. Kolenbrander and published by American Society for Microbiology Press. This book was released on 2011-08-02 with total page 617 pages. Available in PDF, EPUB and Kindle. Book excerpt: Understand how the intricacies of multispecies community life are related to human oral health. * Explores the immense opportunities presented by readily accessible, genetically tractable, genome-sequenced oral species that naturally form multispecies communities. * Highlights model systems that study oral bacterial interactions, including biofilm growth using saliva as the source of nutrition. * Emphasizes the use of genomic inquiry to probe the human oral microbiome.
Author :Michael L. Vasil Publisher :American Society for Microbiology Press ISBN 13 :1555816762 Total Pages :1189 pages Book Rating :4.5/5 (558 download)
Book Synopsis Regulation of Bacterial Virulence by : Michael L. Vasil
Download or read book Regulation of Bacterial Virulence written by Michael L. Vasil and published by American Society for Microbiology Press. This book was released on 2012-12-05 with total page 1189 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive compendium of scholarly contributions relating to bacterial virulence gene regulation. • Provides insights into global control and the switch between distinct infectious states (e.g., acute vs. chronic). • Considers key issues about the mechanisms of gene regulation relating to: surface factors, exported toxins and export mechanisms. • Reflects on how the regulation of intracellular lifestyles and the response to stress can ultimately have an impact on the outcome of an infection. • Highlights and examines some emerging regulatory mechanisms of special significance. • Serves as an ideal compendium of valuable topics for students, researchers and faculty with interests in how the mechanisms of gene regulation ultimately affect the outcome of an array of bacterial infectious diseases.
Download or read book Index Medicus written by and published by . This book was released on 2004 with total page 2432 pages. Available in PDF, EPUB and Kindle. Book excerpt: Vols. for 1963- include as pt. 2 of the Jan. issue: Medical subject headings.
Book Synopsis Periodontal Medicine and Systems Biology by : Brian Henderson
Download or read book Periodontal Medicine and Systems Biology written by Brian Henderson and published by John Wiley & Sons. This book was released on 2009-07-07 with total page 465 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a systems-based approach to periodontology and offers a scientific roadmap of the interactions which can lead to periodontal disease.
Download or read book Microbiology Australia written by and published by . This book was released on 2000-07 with total page 222 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Molecular biology of the cell written by and published by . This book was released on 2003 with total page 660 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Microbiology Australia written by and published by . This book was released on 2000-07 with total page 222 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Lasso Peptides written by Yanyan Li and published by Springer. This book was released on 2014-10-21 with total page 113 pages. Available in PDF, EPUB and Kindle. Book excerpt: Lasso peptides form a growing family of fascinating ribosomally-synthesized and post-translationally modified peptides produced by bacteria. They contain 15 to 24 residues and share a unique interlocked topology that involves an N-terminal 7 to 9-residue macrolactam ring where the C-terminal tail is threaded and irreversibly trapped. The ring results from the condensation of the N-terminal amino group with a side-chain carboxylate of a glutamate at position 8 or 9, or an aspartate at position 7, 8 or 9. The trapping of the tail involves bulky amino acids located in the tail below and above the ring and/or disulfide bridges connecting the ring and the tail. Lasso peptides are subdivided into three subtypes depending on the absence (class II) or presence of one (class III) or two (class I) disulfide bridges. The lasso topology results in highly compact structures that give to lasso peptides an extraordinary stability towards both protease degradation and denaturing conditions. Lasso peptides are generally receptor antagonists, enzyme inhibitors and/or antibacterial or antiviral (anti-HIV) agents. The lasso scaffold and the associated biological activities shown by lasso peptides on different key targets make them promising molecules with high therapeutic potential. Their application in drug design has been exemplified by the development of an integrin antagonist based on a lasso peptide scaffold. The biosynthesis machinery of lasso peptides is therefore of high biotechnological interest, especially since such highly compact and stable structures have to date revealed inaccessible by peptide synthesis. Lasso peptides are produced from a linear precursor LasA, which undergoes a maturation process involving several steps, in particular cleavage of the leader peptide and cyclization. The post-translational modifications are ensured by a dedicated enzymatic machinery, which is composed of an ATP-dependent cysteine protease (LasB) and a lactam synthetase (LasC) that form an enzymatic complex called lasso synthetase. Microcin J25, produced by Escherichia coli AY25, is the archetype of lasso peptides and the most extensively studied. To date only around forty lasso peptides have been isolated, but genome mining approaches have revealed that they are widely distributed among Proteobacteria and Actinobacteria, particularly in Streptomyces, making available a rich resource of novel lasso peptides and enzyme machineries towards lasso topologies.
