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Architecture Exploration Of Fpga Based Accelerators For Bioinformatics Applications
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Book Synopsis Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications by : B. Sharat Chandra Varma
Download or read book Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications written by B. Sharat Chandra Varma and published by Springer. This book was released on 2016-03-02 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents an evaluation methodology to design future FPGA fabrics incorporating hard embedded blocks (HEBs) to accelerate applications. This methodology will be useful for selection of blocks to be embedded into the fabric and for evaluating the performance gain that can be achieved by such an embedding. The authors illustrate the use of their methodology by studying the impact of HEBs on two important bioinformatics applications: protein docking and genome assembly. The book also explains how the respective HEBs are designed and how hardware implementation of the application is done using these HEBs. It shows that significant speedups can be achieved over pure software implementations by using such FPGA-based accelerators. The methodology presented in this book may also be used for designing HEBs for accelerating software implementations in other domains besides bioinformatics. This book will prove useful to students, researchers, and practicing engineers alike.
Book Synopsis ITNG 2021 18th International Conference on Information Technology-New Generations by : Shahram Latifi
Download or read book ITNG 2021 18th International Conference on Information Technology-New Generations written by Shahram Latifi and published by Springer Nature. This book was released on 2021-06-04 with total page 515 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume represents the 18th International Conference on Information Technology - New Generations (ITNG), 2021. ITNG is an annual event focusing on state of the art technologies pertaining to digital information and communications. The applications of advanced information technology to such domains as astronomy, biology, education, geosciences, security, and health care are the among topics of relevance to ITNG. Visionary ideas, theoretical and experimental results, as well as prototypes, designs, and tools that help the information readily flow to the user are of special interest. Machine Learning, Robotics, High Performance Computing, and Innovative Methods of Computing are examples of related topics. The conference features keynote speakers, a best student award, poster award, service award, a technical open panel, and workshops/exhibits from industry, government and academia. This publication is unique as it captures modern trends in IT with a balance of theoretical and experimental work. Most other work focus either on theoretical or experimental, but not both. Accordingly, we do not know of any competitive literature.
Book Synopsis Artificial Intelligence Applications and Reconfigurable Architectures by : Anuradha D. Thakare
Download or read book Artificial Intelligence Applications and Reconfigurable Architectures written by Anuradha D. Thakare and published by John Wiley & Sons. This book was released on 2023-03-21 with total page 245 pages. Available in PDF, EPUB and Kindle. Book excerpt: ARTIFICIAL INTELLIGENCE APPLICATIONS and RECONFIGURABLE ARCHITECTURES The primary goal of this book is to present the design, implementation, and performance issues of AI applications and the suitability of the FPGA platform. This book covers the features of modern Field Programmable Gate Arrays (FPGA) devices, design techniques, and successful implementations pertaining to AI applications. It describes various hardware options available for AI applications, key advantages of FPGAs, and contemporary FPGA ICs with software support. The focus is on exploiting parallelism offered by FPGA to meet heavy computation requirements of AI as complete hardware implementation or customized hardware accelerators. This is a comprehensive textbook on the subject covering a broad array of topics like technological platforms for the implementation of AI, capabilities of FPGA, suppliers’ software tools and hardware boards, and discussion of implementations done by researchers to encourage the AI community to use and experiment with FPGA. Readers will benefit from reading this book because It serves all levels of students and researcher’s as it deals with the basics and minute details of Ecosystem Development Requirements for Intelligent applications with reconfigurable architectures whereas current competitors’ books are more suitable for understanding only reconfigurable architectures. It focuses on all aspects of machine learning accelerators for the design and development of intelligent applications and not on a single perspective such as only on reconfigurable architectures for IoT applications. It is the best solution for researchers to understand how to design and develop various AI, deep learning, and machine learning applications on the FPGA platform. It is the best solution for all types of learners to get complete knowledge of why reconfigurable architectures are important for implementing AI-ML applications with heavy computations. Audience Researchers, industrial experts, scientists, and postgraduate students who are working in the fields of computer engineering, electronics, and electrical engineering, especially those specializing in VLSI and embedded systems, FPGA, artificial intelligence, Internet of Things, and related multidisciplinary projects.
Book Synopsis Reconfigurable and Adaptive Computing by : Nadia Nedjah
Download or read book Reconfigurable and Adaptive Computing written by Nadia Nedjah and published by CRC Press. This book was released on 2018-10-09 with total page 240 pages. Available in PDF, EPUB and Kindle. Book excerpt: Reconfigurable computing techniques and adaptive systems are some of the most promising architectures for microprocessors. Reconfigurable and Adaptive Computing: Theory and Applications explores the latest research activities on hardware architecture for reconfigurable and adaptive computing systems. The first section of the book covers reconfigurable systems. The book presents a software and hardware codesign flow for coarse-grained systems-on-chip, a video watermarking algorithm for the H.264 standard, a solution for regular expressions matching systems, and a novel field programmable gate array (FPGA)-based acceleration solution with MapReduce framework on multiple hardware accelerators. The second section discusses network-on-chip, including an implementation of a multiprocessor system-on-chip platform with shared memory access, end-to-end quality-of-service metrics modeling based on a multi-application environment in network-on-chip, and a 3D ant colony routing (3D-ACR) for network-on-chip with three different 3D topologies. The final section addresses the methodology of system codesign. The book introduces a new software–hardware codesign flow for embedded systems that models both processors and intellectual property cores as services. It also proposes an efficient algorithm for dependent task software–hardware codesign with the greedy partitioning and insert scheduling method (GPISM) by task graph.
Book Synopsis Reconfigurable Computing: Architectures, Tools, and Applications by : Roger Woods
Download or read book Reconfigurable Computing: Architectures, Tools, and Applications written by Roger Woods and published by Springer. This book was released on 2008-08-29 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: Coverage in this proceedings volume includes DNA and string processing applications, reconfigurable computing hardware and systems, image processing, run-time behavior, instruction set extension, as well as random number generation and financial computation.
Book Synopsis Bioinformatics Research and Development by : Mourad Elloumi
Download or read book Bioinformatics Research and Development written by Mourad Elloumi and published by Springer Science & Business Media. This book was released on 2008-08-31 with total page 613 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the papers which were selected for presentation at the second Bio- formatics Research and Development (BIRD) conference held in Vienna, Austria during July 7–9, 2008. BIRD covers a wide range of topics related to bioinformatics. This year sequence analysis and alignment, pathways, networks, systems biology, protein and RNA structure and function, gene expression/regulation and microarrays, databases and data integration, machine learning and data analysis were the subjects of main interest. The decisions of the Program Committee are based on the recommendations of at least three, up to five, reviews for each paper. As a result, 30 of the 61 submitted c- tributions could be accepted for the conference. We were happy to have three invited talks presented by experienced researchers providing visitors with a good overview but also some very important insights into the fascinating domain of bioinformatics. Abstracts and more information on these talks are provided in the conference program as well as at the conference site. In the second part of this volume the selected contributions of the two workshops which were held in parallel to the main conference are presented: Workshop on - namical Aspects of Perturbation, Intervention and Transition in Biological Systems – PETRIN 2008 and Workshop on Algorithms in Molecular Biology – ALBIO 2008 Poster presentations of the BIRD conference are in the companion proceedings published by the Trauner Verlag, Linz.
Book Synopsis High-Performance Computing Using FPGAs by : Wim Vanderbauwhede
Download or read book High-Performance Computing Using FPGAs written by Wim Vanderbauwhede and published by Springer Science & Business Media. This book was released on 2013-08-23 with total page 798 pages. Available in PDF, EPUB and Kindle. Book excerpt: High-Performance Computing using FPGA covers the area of high performance reconfigurable computing (HPRC). This book provides an overview of architectures, tools and applications for High-Performance Reconfigurable Computing (HPRC). FPGAs offer very high I/O bandwidth and fine-grained, custom and flexible parallelism and with the ever-increasing computational needs coupled with the frequency/power wall, the increasing maturity and capabilities of FPGAs, and the advent of multicore processors which has caused the acceptance of parallel computational models. The Part on architectures will introduce different FPGA-based HPC platforms: attached co-processor HPRC architectures such as the CHREC’s Novo-G and EPCC’s Maxwell systems; tightly coupled HRPC architectures, e.g. the Convey hybrid-core computer; reconfigurably networked HPRC architectures, e.g. the QPACE system, and standalone HPRC architectures such as EPFL’s CONFETTI system. The Part on Tools will focus on high-level programming approaches for HPRC, with chapters on C-to-Gate tools (such as Impulse-C, AutoESL, Handel-C, MORA-C++); Graphical tools (MATLAB-Simulink, NI LabVIEW); Domain-specific languages, languages for heterogeneous computing(for example OpenCL, Microsoft’s Kiwi and Alchemy projects). The part on Applications will present case from several application domains where HPRC has been used successfully, such as Bioinformatics and Computational Biology; Financial Computing; Stencil computations; Information retrieval; Lattice QCD; Astrophysics simulations; Weather and climate modeling.
Book Synopsis Reconfigurable Embedded Control Systems: Applications for Flexibility and Agility by : Khalgui, Mohamed
Download or read book Reconfigurable Embedded Control Systems: Applications for Flexibility and Agility written by Khalgui, Mohamed and published by IGI Global. This book was released on 2010-11-30 with total page 651 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This book addresses the development of reconfigurable embedded control systems and describes various problems in this important research area, which include static and dynamic (manual or automatic) reconfigurations, multi-agent architectures, modeling and verification, component-based approaches, architecture description languages, distributed reconfigurable architectures, real-time and low power scheduling, execution models, and the implementation of such systems"--
Book Synopsis FPGA-based Implementation of Signal Processing Systems by : Roger Woods
Download or read book FPGA-based Implementation of Signal Processing Systems written by Roger Woods and published by John Wiley & Sons. This book was released on 2017-05-01 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: An important working resource for engineers and researchers involved in the design, development, and implementation of signal processing systems The last decade has seen a rapid expansion of the use of field programmable gate arrays (FPGAs) for a wide range of applications beyond traditional digital signal processing (DSP) systems. Written by a team of experts working at the leading edge of FPGA research and development, this second edition of FPGA-based Implementation of Signal Processing Systems has been extensively updated and revised to reflect the latest iterations of FPGA theory, applications, and technology. Written from a system-level perspective, it features expert discussions of contemporary methods and tools used in the design, optimization and implementation of DSP systems using programmable FPGA hardware. And it provides a wealth of practical insights—along with illustrative case studies and timely real-world examples—of critical concern to engineers working in the design and development of DSP systems for radio, telecommunications, audio-visual, and security applications, as well as bioinformatics, Big Data applications, and more. Inside you will find up-to-date coverage of: FPGA solutions for Big Data Applications, especially as they apply to huge data sets The use of ARM processors in FPGAs and the transfer of FPGAs towards heterogeneous computing platforms The evolution of High Level Synthesis tools—including new sections on Xilinx's HLS Vivado tool flow and Altera's OpenCL approach Developments in Graphical Processing Units (GPUs), which are rapidly replacing more traditional DSP systems FPGA-based Implementation of Signal Processing Systems, 2nd Edition is an indispensable guide for engineers and researchers involved in the design and development of both traditional and cutting-edge data and signal processing systems. Senior-level electrical and computer engineering graduates studying signal processing or digital signal processing also will find this volume of great interest.
Book Synopsis Embedded Computer Systems: Architectures, Modeling, and Simulation by : Alex Orailoglu
Download or read book Embedded Computer Systems: Architectures, Modeling, and Simulation written by Alex Orailoglu and published by Springer Nature. This book was released on 2022-04-26 with total page 528 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 21st International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation, SAMOS 2021, which took place in July 2021. Due to COVID-19 pandemic the conference was held virtually. The 17 full papers presented in this volume were carefully reviewed and selected from 45 submissions. The papers are organized in topics as follows: simulation and design space exploration; the 3Cs - Cache, Cluster and Cloud; heterogeneous SoC; novel CPU architectures and applications; dataflow; innovative architectures and tools for security; next generation computing; insights from negative results.
Book Synopsis Parallel Computing: Technology Trends by : I. Foster
Download or read book Parallel Computing: Technology Trends written by I. Foster and published by IOS Press. This book was released on 2020-03-25 with total page 806 pages. Available in PDF, EPUB and Kindle. Book excerpt: The year 2019 marked four decades of cluster computing, a history that began in 1979 when the first cluster systems using Components Off The Shelf (COTS) became operational. This achievement resulted in a rapidly growing interest in affordable parallel computing for solving compute intensive and large scale problems. It also directly lead to the founding of the Parco conference series. Starting in 1983, the International Conference on Parallel Computing, ParCo, has long been a leading venue for discussions of important developments, applications, and future trends in cluster computing, parallel computing, and high-performance computing. ParCo2019, held in Prague, Czech Republic, from 10 – 13 September 2019, was no exception. Its papers, invited talks, and specialized mini-symposia addressed cutting-edge topics in computer architectures, programming methods for specialized devices such as field programmable gate arrays (FPGAs) and graphical processing units (GPUs), innovative applications of parallel computers, approaches to reproducibility in parallel computations, and other relevant areas. This book presents the proceedings of ParCo2019, with the goal of making the many fascinating topics discussed at the meeting accessible to a broader audience. The proceedings contains 57 contributions in total, all of which have been peer-reviewed after their presentation. These papers give a wide ranging overview of the current status of research, developments, and applications in parallel computing.
Book Synopsis Design of FPGA-Based Computing Systems with OpenCL by : Hasitha Muthumala Waidyasooriya
Download or read book Design of FPGA-Based Computing Systems with OpenCL written by Hasitha Muthumala Waidyasooriya and published by Springer. This book was released on 2017-10-24 with total page 131 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides wide knowledge about designing FPGA-based heterogeneous computing systems, using a high-level design environment based on OpenCL (Open Computing language), which is called OpenCL for FPGA. The OpenCL-based design methodology will be the key technology to exploit the potential of FPGAs in various applications such as low-power embedded applications and high-performance computing. By understanding the OpenCL-based design methodology, readers can design an entire FPGA-based computing system more easily compared to the conventional HDL-based design, because OpenCL for FPGA takes care of computation on a host, data transfer between a host and an FPGA, computation on an FPGA with a capable of accessing external DDR memories. In the step-by-step way, readers can understand followings: how to set up the design environment how to write better codes systematically considering architectural constraints how to design practical applications
Book Synopsis Efficient Processing of Deep Neural Networks by : Vivienne Sze
Download or read book Efficient Processing of Deep Neural Networks written by Vivienne Sze and published by Springer Nature. This book was released on 2022-05-31 with total page 254 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a structured treatment of the key principles and techniques for enabling efficient processing of deep neural networks (DNNs). DNNs are currently widely used for many artificial intelligence (AI) applications, including computer vision, speech recognition, and robotics. While DNNs deliver state-of-the-art accuracy on many AI tasks, it comes at the cost of high computational complexity. Therefore, techniques that enable efficient processing of deep neural networks to improve key metrics—such as energy-efficiency, throughput, and latency—without sacrificing accuracy or increasing hardware costs are critical to enabling the wide deployment of DNNs in AI systems. The book includes background on DNN processing; a description and taxonomy of hardware architectural approaches for designing DNN accelerators; key metrics for evaluating and comparing different designs; features of DNN processing that are amenable to hardware/algorithm co-design to improve energy efficiency and throughput; and opportunities for applying new technologies. Readers will find a structured introduction to the field as well as formalization and organization of key concepts from contemporary work that provide insights that may spark new ideas.
Book Synopsis Artificial Neural Networks in Biomedicine by : Paulo J.G. Lisboa
Download or read book Artificial Neural Networks in Biomedicine written by Paulo J.G. Lisboa and published by Springer Science & Business Media. This book was released on 2000-02-02 with total page 314 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides a state-of-the-art survey of artificial neural network applications in biomedical diagnosis, laboratory data analysis and related practical areas. It looks at biomedical applications which involve customising neural network technology to resolve specific difficulties with data processing, and deals with applications relating to particular aspects of clinical practice and laboratory or medically-related analysis. Each chapter is self-contained with regard to the technology used, covering important technical points and implementation issues like the design of user interfaces and hardware/software platforms. Artificial Neural Networks in Biomedicine will be of interest to computer scientists and neural network practitioners who want to extend their knowledge of issues relevant to biomedical applications, developers of clinical computer systems, and medical researchers looking for new methods and computational tools.
Book Synopsis Reconfigurable Computing by : Joao Cardoso
Download or read book Reconfigurable Computing written by Joao Cardoso and published by Springer Science & Business Media. This book was released on 2011-08-17 with total page 308 pages. Available in PDF, EPUB and Kindle. Book excerpt: As the complexity of modern embedded systems increases, it becomes less practical to design monolithic processing platforms. As a result, reconfigurable computing is being adopted widely for more flexible design. Reconfigurable Computers offer the spatial parallelism and fine-grained customizability of application-specific circuits with the postfabrication programmability of software. To make the most of this unique combination of performance and flexibility, designers need to be aware of both hardware and software issues. FPGA users must think not only about the gates needed to perform a computation but also about the software flow that supports the design process. The goal of this book is to help designers become comfortable with these issues, and thus be able to exploit the vast opportunities possible with reconfigurable logic.
Download or read book FPGA Architecture written by Ian Kuon and published by Now Publishers Inc. This book was released on 2008 with total page 134 pages. Available in PDF, EPUB and Kindle. Book excerpt: Reviews the historical development of programmable logic devices, the fundamental programming technologies that the programmability is built on, and then describes the basic understandings gleaned from research on architectures. It is an invaluable reference for engineers and computer scientists.
Book Synopsis Physical Layer Multi-Core Prototyping by : Maxime Pelcat
Download or read book Physical Layer Multi-Core Prototyping written by Maxime Pelcat and published by Springer. This book was released on 2012-08-12 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Base stations developed according to the 3GPP Long Term Evolution (LTE) standard require unprecedented processing power. 3GPP LTE enables data rates beyond hundreds of Mbits/s by using advanced technologies, necessitating a highly complex LTE physical layer. The operating power of base stations is a significant cost for operators, and is currently optimized using state-of-the-art hardware solutions, such as heterogeneous distributed systems. The traditional system design method of porting algorithms to heterogeneous distributed systems based on test-and-refine methods is a manual, thus time-expensive, task. Physical Layer Multi-Core Prototyping: A Dataflow-Based Approach provides a clear introduction to the 3GPP LTE physical layer and to dataflow-based prototyping and programming. The difficulties in the process of 3GPP LTE physical layer porting are outlined, with particular focus on automatic partitioning and scheduling, load balancing and computation latency reduction, specifically in systems based on heterogeneous multi-core Digital Signal Processors. Multi-core prototyping methods based on algorithm dataflow modeling and architecture system-level modeling are assessed with the goal of automating and optimizing algorithm porting. With its analysis of physical layer processing and proposals of parallel programming methods, which include automatic partitioning and scheduling, Physical Layer Multi-Core Prototyping: A Dataflow-Based Approach is a key resource for researchers and students. This study of LTE algorithms which require dynamic or static assignment and dynamic or static scheduling, allows readers to reassess and expand their knowledge of this vital component of LTE base station design.
