Alphafold 3 Understanding Protein Structures

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Alphafold 3 Understanding Protein Structures

Author : StoryBuddiesPlay
Publisher : StoryBuddiesPlay
ISBN 13 :
Total Pages : 69 pages
Book Rating : 4./5 ( download)

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Book Synopsis Alphafold 3 Understanding Protein Structures by : StoryBuddiesPlay

Download or read book Alphafold 3 Understanding Protein Structures written by StoryBuddiesPlay and published by StoryBuddiesPlay. This book was released on 2024-06-09 with total page 69 pages. Available in PDF, EPUB and Kindle. Book excerpt: AlphaFold 3: Unveiling the Protein Universe and Revolutionizing Healthcare Proteins are the fundamental building blocks of life, playing a critical role in every physiological process. But understanding their complex structures has been a longstanding challenge. Enter AlphaFold 3, a revolutionary artificial intelligence system that has unlocked a new era of protein science. This comprehensive guide delves into the fascinating world of proteins and explores how AlphaFold 3 is transforming our understanding and manipulation of these essential molecules. Unveiling Protein Structures with Unprecedented Accuracy AlphaFold 3 utilizes the power of deep learning to predict protein structures with remarkable accuracy, surpassing even the most advanced experimental methods. This breakthrough allows scientists to visualize the intricate three-dimensional shapes of proteins, providing crucial insights into their function and potential roles in health and disease. The Future of Medicine: Personalized Treatments and Early Disease Detection With the ability to predict protein structures, AlphaFold 3 holds immense potential for personalized medicine. By analyzing an individual's unique protein profile, doctors can potentially tailor treatments and identify those at risk for developing certain protein-related diseases. This personalized approach could lead to more effective therapies, earlier intervention, and improved patient outcomes. Beyond Medicine: A Protein-Powered Future The impact of AlphaFold 3 extends far beyond the realm of medicine. Its ability to predict protein structures can benefit various fields, including: Biotechnology and Agriculture: Design of crops with improved resistance to pests and diseases, development of biofuels, and bioremediation strategies. Materials Science and Engineering: Creation of biomimetic materials with unique properties and design of next-generation electronics. Energy Production and Storage: Development of novel enzymes for efficient biocatalysis and exploration of protein-based energy storage solutions. A New Era of Discovery: Unveiling Protein Dynamics and Designing the Future The future of protein science promises even more exciting advancements. By incorporating protein dynamics – how these molecules move and interact – into predictions, AlphaFold 3 can offer a more complete picture of protein function. Additionally, the field of protein design aims to create proteins with entirely new properties, paving the way for groundbreaking innovations in various sectors. Join the Exploration: A Deep Dive into the World of Proteins This guide is just the beginning of your journey into the fascinating world of proteins and AlphaFold 3. As research continues to unlock the secrets of these remarkable molecules, the possibilities for a healthier, more sustainable future are truly limitless.

AlphaFold 3 A Revolution in Protein Structure Prediction

Author : StoryBuddiesPlay
Publisher : StoryBuddiesPlay
ISBN 13 :
Total Pages : 71 pages
Book Rating : 4./5 ( download)

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Book Synopsis AlphaFold 3 A Revolution in Protein Structure Prediction by : StoryBuddiesPlay

Download or read book AlphaFold 3 A Revolution in Protein Structure Prediction written by StoryBuddiesPlay and published by StoryBuddiesPlay. This book was released on 2024-05-19 with total page 71 pages. Available in PDF, EPUB and Kindle. Book excerpt: AlphaFold 3: Unveiling the Secrets of Life, One Molecule at a Time Demystifying the intricate world of proteins just got a whole lot easier with the arrival of AlphaFold 3. This groundbreaking AI model, developed by DeepMind and Isomorphic Labs, has revolutionized protein structure prediction, a field that has captivated scientists for decades. No longer limited to laborious experimental methods, AlphaFold 3 utilizes the power of deep learning to accurately predict protein structures from their amino acid sequences. This capability unlocks a treasure trove of possibilities for various scientific disciplines. From accelerating drug discovery and personalized medicine to understanding complex diseases and designing novel biomaterials, AlphaFold 3 stands poised to transform our understanding of life at the molecular level. Here's what you'll discover in this comprehensive guide: The Protein Folding Problem Explained: Dive into the challenges of traditionally predicting protein structures and the significance of solving this scientific puzzle. The Rise of Deep Learning: A New Hope for Protein Science: Explore how deep learning has emerged as a powerful tool for tackling complex scientific problems like protein structure prediction. A Deep Dive into AlphaFold: Birth of a Revolutionary AI Model: Learn about the development of AlphaFold by DeepMind, its groundbreaking architecture, and its impact on the scientific community. From AlphaFold 2 to AlphaFold 3: Pushing the Boundaries of Accuracy: Witness the continuous advancements in AlphaFold's capabilities, culminating in AlphaFold 3's ability to predict structures of a wider range of biomolecules beyond proteins. Revolutionizing Drug Discovery: How AlphaFold 3 is Changing the Game: Discover how AlphaFold 3 is accelerating the identification and design of new drugs by providing precise structural insights into protein-drug interactions. Unlocking the Secrets of Diseases: A New Lens for Diagnosis and Treatment: Explore how AlphaFold 3 is transforming our understanding of diseases at the molecular level, paving the way for earlier diagnosis, personalized medicine, and the development of new therapies. Beyond Proteins: Expanding the Horizons of AlphaFold 3: Uncover the exciting potential of AlphaFold 3 in predicting the structures of DNA, RNA, and other biomolecules, leading to a more holistic view of cellular processes. The Future of Protein Science: A Collaborative and Responsible Approach: Delve into the ethical considerations surrounding AlphaFold 3 and the importance of responsible development, open access, and international collaboration to maximize its benefits for humanity. This blog post goes beyond just summarizing the features of AlphaFold 3. It provides a compelling narrative that explores the history, scientific significance, and future potential of this groundbreaking technology. Whether you're a scientist, student, or simply curious about the future of scientific discovery, this guide offers a comprehensive exploration of AlphaFold 3 and its transformative impact on the world of science.

Introduction to AlphaFold 3

Author : StoryBuddiesPlay
Publisher : StoryBuddiesPlay
ISBN 13 :
Total Pages : 63 pages
Book Rating : 4./5 ( download)

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Book Synopsis Introduction to AlphaFold 3 by : StoryBuddiesPlay

Download or read book Introduction to AlphaFold 3 written by StoryBuddiesPlay and published by StoryBuddiesPlay. This book was released on 2024-06-09 with total page 63 pages. Available in PDF, EPUB and Kindle. Book excerpt: AlphaFold 3: Unveiling the Secrets of Life, One Protein at a Time Proteins are the workhorses of our cells, playing a crucial role in everything from building tissues to fighting off disease. But understanding how a protein functions depends on its unique 3D structure, a mystery that has long puzzled scientists. Enter AlphaFold 3, a groundbreaking AI tool that is revolutionizing protein structure prediction. This comprehensive guide unravels the fascinating world of AlphaFold 3 and its impact on the field of bioinformatics. We'll delve into the protein folding problem and the limitations of traditional methods. Then, we'll explore how AlphaFold 3 leverages the power of machine learning to predict protein structures with unprecedented accuracy. Demystifying AI for Everyone: No prior knowledge of AI is required! We'll break down complex concepts into clear and concise explanations, allowing you to grasp the core principles behind AlphaFold 3. Beyond Protein Structure: AlphaFold 3's capabilities extend beyond just proteins. We'll explore how it can predict interactions between different molecules, paving the way for advancements in drug discovery and understanding complex biological processes. Unlocking a Treasure Trove of Information: Discover the AlphaFold Protein Structure Database, a freely available online resource that grants access to a vast collection of predicted protein structures. Learn how to navigate the database and utilize this valuable information to accelerate your research. A Glimpse into the Future: This guide doesn't just focus on the present. We'll explore the exciting potential of AlphaFold 3 and AI in bioinformatics. Imagine personalized medicine tailored to individual protein structures, or the development of entirely new biomaterials with desired properties. Here's what you'll gain from this comprehensive guide: A clear understanding of the protein folding problem and its significance. Demystified explanations of AI concepts relevant to AlphaFold 3. Exploration of AlphaFold 3's capabilities beyond protein structure prediction. Insights into the AlphaFold Protein Structure Database and its functionalities. A glimpse into the transformative future of AI in bioinformatics. Whether you're a student, researcher, or simply curious about the latest advancements in science, this guide is your roadmap to unlocking the secrets of life with AlphaFold 3.

The Science Behind AlphaFold

Author : StoryBuddiesPlay
Publisher : StoryBuddiesPlay
ISBN 13 :
Total Pages : 58 pages
Book Rating : 4./5 ( download)

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Book Synopsis The Science Behind AlphaFold by : StoryBuddiesPlay

Download or read book The Science Behind AlphaFold written by StoryBuddiesPlay and published by StoryBuddiesPlay. This book was released on 2024-06-03 with total page 58 pages. Available in PDF, EPUB and Kindle. Book excerpt: AlphaFold, a groundbreaking AI system, has cracked the code on protein structure prediction, a challenge that baffled scientists for decades. This book explores the science behind AlphaFold, delving into deep learning, big data, and the inner workings of this remarkable program. Uncover how AlphaFold is revolutionizing protein science, with the potential to accelerate drug discovery, personalize medicine, and design innovative materials. This comprehensive guide explores: The significance of protein structures and the challenges of prediction How AlphaFold leverages deep learning and vast data resources The process of protein structure prediction with AlphaFold, including its strengths and limitations The ethical considerations surrounding AI in protein science The exciting future applications of AlphaFold in various scientific fields Whether you're a scientist, student, or simply curious about the future of biology, this book provides a clear and engaging exploration of AlphaFold and its transformative impact on protein science.

The Protein Folding Problem and Tertiary Structure Prediction

Author : Kenneth M.Jr. Merz
Publisher : Springer Science & Business Media
ISBN 13 : 1468468316
Total Pages : 585 pages
Book Rating : 4.4/5 (684 download)

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Book Synopsis The Protein Folding Problem and Tertiary Structure Prediction by : Kenneth M.Jr. Merz

Download or read book The Protein Folding Problem and Tertiary Structure Prediction written by Kenneth M.Jr. Merz and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 585 pages. Available in PDF, EPUB and Kindle. Book excerpt: A solution to the protein folding problem has eluded researchers for more than 30 years. The stakes are high. Such a solution will make 40,000 more tertiary structures available for immediate study by translating the DNA sequence information in the sequence databases into three-dimensional protein structures. This translation will be indispensable for the analy sis of results from the Human Genome Project, de novo protein design, and many other areas of biotechnological research. Finally, an in-depth study of the rules of protein folding should provide vital clues to the protein fold ing process. The search for these rules is therefore an important objective for theoretical molecular biology. Both experimental and theoretical ap proaches have been used in the search for a solution, with many promising results but no general solution. In recent years, there has been an exponen tial increase in the power of computers. This has triggered an incredible outburst of theoretical approaches to solving the protein folding problem ranging from molecular dynamics-based studies of proteins in solution to the actual prediction of protein structures from first principles. This volume attempts to present a concise overview of these advances. Adrian Roitberg and Ron Elber describe the locally enhanced sam pling/simulated annealing conformational search algorithm (Chapter 1), which is potentially useful for the rapid conformational search of larger molecular systems.

Protein Conformation

Author : Derek J. Chadwick
Publisher : John Wiley & Sons
ISBN 13 : 0470514159
Total Pages : 282 pages
Book Rating : 4.4/5 (75 download)

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Book Synopsis Protein Conformation by : Derek J. Chadwick

Download or read book Protein Conformation written by Derek J. Chadwick and published by John Wiley & Sons. This book was released on 2008-04-30 with total page 282 pages. Available in PDF, EPUB and Kindle. Book excerpt: How the amino acid sequence of a protein determines its three-dimensional structure is a major problem in biology and chemistry. Leading experts in the fields of NMR spectroscopy, X-ray crystallography, protein engineering and molecular modeling offer provocative insights into current views on the protein folding problem and various aspects for future progress.

Understanding Tertiary Interactions in Protein Structures

Author : Tejdeep Singh Bawa
Publisher : LAP Lambert Academic Publishing
ISBN 13 : 9783843394031
Total Pages : 64 pages
Book Rating : 4.3/5 (94 download)

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Book Synopsis Understanding Tertiary Interactions in Protein Structures by : Tejdeep Singh Bawa

Download or read book Understanding Tertiary Interactions in Protein Structures written by Tejdeep Singh Bawa and published by LAP Lambert Academic Publishing. This book was released on 2011-02 with total page 64 pages. Available in PDF, EPUB and Kindle. Book excerpt: Three-dimensional structures of proteins are the support of their biological functions.Their folds are stabilized by contacts between residues.Inner protein contacts are generally described through direct atomic contacts, while contact prediction methods mainly used inter-C distances. During the process of protein folding, the amino acid residues along the polypeptide chain interact with each other in a cooperative manner to form a stable native structure.The knowledge about inter-residue interactions in protein structures is helpful to understand the mechanism of protein folding and stability.It provides valuable insights for understanding protein folding and de novo protein design.I analyzed protein contacts on a high quality non-redundant pdbs drawn from protein databank using various criteria. I have computed the average number of contacts depending on the distance threshold to define a contact.Preferential contacts between types of amino acids have been highlighted. Detailed analysis have been done concerning the proximity of contacts in the sequence, the size of the proteins and fold classes.The strongest differences have been extracted, highlighting important residues

Protein Structure, Stability, and Folding

Author : Kenneth P. Murphy
Publisher : Springer Science & Business Media
ISBN 13 : 1592591930
Total Pages : 258 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Protein Structure, Stability, and Folding by : Kenneth P. Murphy

Download or read book Protein Structure, Stability, and Folding written by Kenneth P. Murphy and published by Springer Science & Business Media. This book was released on 2008-02-04 with total page 258 pages. Available in PDF, EPUB and Kindle. Book excerpt: In Protein Structure, Stability, and Folding, Kenneth P. Murphy and a panel of internationally recognized investigators describe some of the newest experimental and theoretical methods for investigating these critical events and processes. Among the techniques discussed are the many methods for calculating many of protein stability and dynamics from knowledge of the structure, and for performing molecular dynamics simulations of protein unfolding. New experimental approaches presented include the use of co-solvents, novel applications of hydrogen exchange techniques, temperature-jump methods for looking at folding events, and new strategies for mutagenesis experiments. Unique in its powerful combination of theory and practice, Protein Structure, Stability, and Folding offers protein and biophysical chemists the means to gain a more comprehensive understanding of some of this complex area by detailing many of the major techniques in use today.

Introduction to Proteins

Author : Amit Kessel
Publisher : CRC Press
ISBN 13 : 1439810729
Total Pages : 623 pages
Book Rating : 4.4/5 (398 download)

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Book Synopsis Introduction to Proteins by : Amit Kessel

Download or read book Introduction to Proteins written by Amit Kessel and published by CRC Press. This book was released on 2010-12-17 with total page 623 pages. Available in PDF, EPUB and Kindle. Book excerpt: As the tools and techniques of structural biophysics assume greater roles in biological research and a range of application areas, learning how proteins behave becomes crucial to understanding their connection to the most basic and important aspects of life. With more than 350 color images throughout, Introduction to Proteins: Structure, Function, and Motion presents a unified, in-depth treatment of the relationship between the structure, dynamics, and function of proteins. Taking a structural–biophysical approach, the authors discuss the molecular interactions and thermodynamic changes that transpire in these highly complex molecules. The text incorporates various biochemical, physical, functional, and medical aspects. It covers different levels of protein structure, current methods for structure determination, energetics of protein structure, protein folding and folded state dynamics, and the functions of intrinsically unstructured proteins. The authors also clarify the structure–function relationship of proteins by presenting the principles of protein action in the form of guidelines. This comprehensive, color book uses numerous proteins as examples to illustrate the topics and principles and to show how proteins can be analyzed in multiple ways. It refers to many everyday applications of proteins and enzymes in medical disorders, drugs, toxins, chemical warfare, and animal behavior. Downloadable questions for each chapter are available at CRC Press Online.

Annual Review of Biophysics

Author : Ken A. Dill
Publisher :
ISBN 13 : 9780824318444
Total Pages : 0 pages
Book Rating : 4.3/5 (184 download)

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Book Synopsis Annual Review of Biophysics by : Ken A. Dill

Download or read book Annual Review of Biophysics written by Ken A. Dill and published by . This book was released on 2015-06-22 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Immunoinformatics

Author : Christian Schönbach
Publisher : Springer Science & Business Media
ISBN 13 : 0387729682
Total Pages : 216 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis Immunoinformatics by : Christian Schönbach

Download or read book Immunoinformatics written by Christian Schönbach and published by Springer Science & Business Media. This book was released on 2007-11-21 with total page 216 pages. Available in PDF, EPUB and Kindle. Book excerpt: In contrast to existing books on immunoinformatics, this volume presents a cross-section of immunoinformatics research. The contributions highlight the interdisciplinary nature of the field and how collaborative efforts among bioinformaticians and bench scientists result in innovative strategies for understanding the immune system. Immunoinformatics is ideal for scientists and students in immunology, bioinformatics, microbiology, and many other disciplines.

Protein Physics

Author : Alexei V. Finkelstein
Publisher : Elsevier
ISBN 13 : 0081012365
Total Pages : 530 pages
Book Rating : 4.0/5 (81 download)

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Book Synopsis Protein Physics by : Alexei V. Finkelstein

Download or read book Protein Physics written by Alexei V. Finkelstein and published by Elsevier. This book was released on 2016-06-22 with total page 530 pages. Available in PDF, EPUB and Kindle. Book excerpt: Protein Physics: A Course of Lectures covers the most general problems of protein structure, folding and function. It describes key experimental facts and introduces concepts and theories, dealing with fibrous, membrane, and water-soluble globular proteins, in both their native and denatured states. The book systematically summarizes and presents the results of several decades of worldwide fundamental research on protein physics, structure, and folding, describing many physical models that help readers make estimates and predictions of physical processes that occur in proteins. New to this revised edition is the inclusion of novel information on amyloid aggregation, natively disordered proteins, protein folding in vivo, protein motors, misfolding, chameleon proteins, advances in protein engineering & design, and advances in the modeling of protein folding. Further, the book provides problems with solutions, many new and updated references, and physical and mathematical appendices. In addition, new figures (including stereo drawings, with a special appendix showing how to use them) are added, making this an ideal resource for graduate and advanced undergraduate students and researchers in academia in the fields of biophysics, physics, biochemistry, biologists, biotechnology, and chemistry. Fully revised and expanded new edition based on the latest research developments in protein physics Written by the world's top expert in the field Deals with fibrous, membrane, and water-soluble globular proteins, in both their native and denatured states Summarizes, in a systematic form, the results of several decades of worldwide fundamental research on protein physics and their structure and folding Examines experimental data on protein structure in the post-genome era

Protein Folding

Author : Charis Ghelis
Publisher : Academic Press
ISBN 13 : 0323140920
Total Pages : 580 pages
Book Rating : 4.3/5 (231 download)

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Book Synopsis Protein Folding by : Charis Ghelis

Download or read book Protein Folding written by Charis Ghelis and published by Academic Press. This book was released on 2012-12-02 with total page 580 pages. Available in PDF, EPUB and Kindle. Book excerpt: Protein Folding aims to collect the most important information in the field of protein folding and probes the main principles that govern formation of the three-dimensional structure of a protein from a nascent polypeptide chain, as well as how the functional properties appear. This text is organized into three sections and consists of 15 chapters. After an introductory chapter where the main problems of protein folding are considered at the cellular level in the context of protein biosynthesis, the discussion turns to the conformation of native globular proteins. Definitions and rules of nomenclature are given, including the structural organization of globular proteins deduced from X-ray crystallographic data. Folding mechanisms are tentatively deduced from the observation of invariants in the architecture of folded proteins. The next chapters focus on the energetics of protein conformation and structure, indicating the principles of thermodynamic stability of the native structure, along with theoretical computation studies of protein folding, structure prediction, and folding simulation. The reader is also introduced to various experimental approaches; the reversibility of the unfolding-folding process; equilibrium and kinetic studies; and detection and characterization of intermediates in protein folding. This text concludes with a chapter dealing with problems specific to oligomeric proteins. This book is intended for research scientists, specialists, biochemists, and students of biochemistry and biology.

Computational Structural Biology

Author : Torsten Schwede
Publisher : World Scientific
ISBN 13 : 9812778780
Total Pages : 790 pages
Book Rating : 4.8/5 (127 download)

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Book Synopsis Computational Structural Biology by : Torsten Schwede

Download or read book Computational Structural Biology written by Torsten Schwede and published by World Scientific. This book was released on 2008 with total page 790 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a comprehensive introduction to Landau-Lifshitz equations and Landau-Lifshitz-Maxwell equations, beginning with the work by Yulin Zhou and Boling Guo in the early 1980s and including most of the work done by this Chinese group led by Zhou and Guo since. The book focuses on aspects such as the existence of weak solutions in multi dimensions, existence and uniqueness of smooth solutions in one dimension, relations with harmonic map heat flows, partial regularity and long time behaviors. The book is a valuable reference book for those who are interested in partial differential equations, geometric analysis and mathematical physics. It may also be used as an advanced textbook by graduate students in these fields.

Fuzziness

Author : Monika Fuxreiter
Publisher : Springer Science & Business Media
ISBN 13 : 1461406595
Total Pages : 210 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Fuzziness by : Monika Fuxreiter

Download or read book Fuzziness written by Monika Fuxreiter and published by Springer Science & Business Media. This book was released on 2012-03-07 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: Detailed characterization of fuzzy interactions will be of central importance for understanding the diverse biological functions of intrinsically disordered proteins in complex eukaryotic signaling networks. In this volume, Peter Tompa and Monika Fuxreiter have assembled a series of papers that address the issue of fuzziness in molecular interactions. These papers provide a broad overview of the phenomenon of fuzziness and provide compelling examples of the central role played by fuzzy interactions in regulation of cellular signaling processes and in viral infectivity. These contributions summarize the current state of knowledge in this new field and will undoubtedly stimulate future research that will further advance our understanding of fuzziness and its role in biomolecular interactions.

Frontiers in Protein Structure, Function, and Dynamics

Author : Dev Bukhsh Singh
Publisher : Springer Nature
ISBN 13 : 9811555303
Total Pages : 458 pages
Book Rating : 4.8/5 (115 download)

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Book Synopsis Frontiers in Protein Structure, Function, and Dynamics by : Dev Bukhsh Singh

Download or read book Frontiers in Protein Structure, Function, and Dynamics written by Dev Bukhsh Singh and published by Springer Nature. This book was released on 2020-07-02 with total page 458 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book discusses a broad range of basic and advanced topics in the field of protein structure, function, folding, flexibility, and dynamics. Starting with a basic introduction to protein purification, estimation, storage, and its effect on the protein structure, function, and dynamics, it also discusses various experimental and computational structure determination approaches; the importance of molecular interactions and water in protein stability, folding and dynamics; kinetic and thermodynamic parameters associated with protein-ligand binding; single molecule techniques and their applications in studying protein folding and aggregation; protein quality control; the role of amino acid sequence in protein aggregation; muscarinic acetylcholine receptors, antimuscarinic drugs, and their clinical significances. Further, the book explains the current understanding on the therapeutic importance of the enzyme dopamine beta hydroxylase; structural dynamics and motions in molecular motors; role of cathepsins in controlling degradation of extracellular matrix during disease states; and the important structure-function relationship of iron-binding proteins, ferritins. Overall, the book is an important guide and a comprehensive resource for understanding protein structure, function, dynamics, and interaction.

Protein Structure and Function

Author : Gregory Petsko
Publisher : OUP Oxford
ISBN 13 : 9780199556847
Total Pages : 220 pages
Book Rating : 4.5/5 (568 download)

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Book Synopsis Protein Structure and Function by : Gregory Petsko

Download or read book Protein Structure and Function written by Gregory Petsko and published by OUP Oxford. This book was released on 2008-05-29 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: Protein Structure and Function provides a critical survey of our current understanding protein structure and function in the age of genomics. Moving from sequence to structure, and structure to function, the book also explores the link between sequence and function in a series of case studies in structural and functional genomics.