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A Multi Scale Metabolic Model Of The Whole Human Body
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Book Synopsis A Multi-scale Metabolic Model of the Whole-Human Body by : Masood Khaksar Toroghi
Download or read book A Multi-scale Metabolic Model of the Whole-Human Body written by Masood Khaksar Toroghi and published by . This book was released on 2018 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Model-based design (MBD) is a well-known approach in the biomedical and health sciences research community. It has a significant impact for answering important questions related to human metabolism, systems pharmacology, precision medicine, epidemiology and public health. Multi-scale modelling is one of the MBD approaches to analyze and study complex biological systems like the human body. However, there are some challenges associated with this approach. For instance, a lack of systematic integration methods, a lack of efficient computational algorithms, and difficulty for model validation. This thesis aims to meet these challenges. First, I present a multi-scale modelling framework that was developed using a dynamic parsimonious flux balance analysis technique. The mechanistic model integrates the metabolomic and genomic data with human physiology. Simulations are performed to demonstrate the computational efficiency of integration algorithm. Then, I use the proposed model to identify biomarkers for inborn errors of metabolism. I explore how the developed model can be used to predict blood alcohol concentrations. Here, in vivo data are integrated with the metabolic model to validate the prediction results. In the next section of the thesis, I develop a mathematical model for low-density lipoprotein cholesterol (LDL-C) regulation in the body. The proposed model integrates the metabolic pathway for cholesterol synthesis, hepatic LDL receptor (LDLRs) signaling pathway, and proprotein convertase subtilisin/kexin type 9 (PCSK9) mechanism to degrade LDLRs at the surface of the hepatocyte cells. Circulating PCSK9 increases endosomal and lysosomal degradation of hepatic LDL receptors, resulting in the decreased ability to clear LDL-C from the circulation. Experimental evidence and previous studies are used to obtain the parameters of the model. The LDL-C model is employed to predict the effect of anti-PCSK9 and statin drugs on LDL-C levels in a certain populations with hypercholesterolemia. In the next part of the research, I develop an algorithm to estimate drug dosage for individual patients with hyperuricemia. The proposed computational algorithm uses the multi-scale modelling framework to create individual disease models. An in silico study shows the potential of proposed modelling framework in precision medicine. Finally, aligned with the research objective, I develop a new modelling framework to capture multiple functions of the liver cells simultaneously. The simulation results show that the developed model has promise with respect to computational efficiency, convergence and robustness. The proposed multi-scale metabolic modelling framework integrating genomic and metabolomic data presented in this thesis should aid biomedical engineers and clinicians to address different health-related problems such as obesity, diabetes, cardiovascular, and genetic diseases.
Book Synopsis Systems Biology by : Bernhard Palsson
Download or read book Systems Biology written by Bernhard Palsson and published by Cambridge University Press. This book was released on 2015-01-26 with total page 551 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive single-authored textbook on genome-scale models and the bottom-up approach to systems biology.
Book Synopsis Multiscale Cancer Modeling by : Thomas S. Deisboeck
Download or read book Multiscale Cancer Modeling written by Thomas S. Deisboeck and published by CRC Press. This book was released on 2010-12-08 with total page 492 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cancer is a complex disease process that spans multiple scales in space and time. Driven by cutting-edge mathematical and computational techniques, in silico biology provides powerful tools to investigate the mechanistic relationships of genes, cells, and tissues. It enables the creation of experimentally testable hypotheses, the integration of dat
Download or read book The Pangenome written by Hervé Tettelin and published by Springer Nature. This book was released on 2020-04-30 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.
Book Synopsis Molecular Biology of The Cell by : Bruce Alberts
Download or read book Molecular Biology of The Cell written by Bruce Alberts and published by . This book was released on 2002 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Advances in Applied Microbiology by :
Download or read book Advances in Applied Microbiology written by and published by Elsevier. This book was released on 2024-04-18 with total page 132 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Applied Microbiology, Volume 126 continues the comprehensive reach of this widely read and authoritative review source in microbiology where users will find invaluable references and information on a variety of areas relating to the topics of microbiology. Contains contributions from leading authorities in the field Informs and updates on the latest developments in the field of microbiology Includes discussions on the role of specific molecules in pathogen life stages, interactions, and much more
Book Synopsis Human Body Composition by : Steven Heymsfield
Download or read book Human Body Composition written by Steven Heymsfield and published by Human Kinetics. This book was released on 2005 with total page 544 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 2nd edition of Human Body Composition includes updated information and new chapters. The editors and 35 contributors are well respected researchers in the field of body composition science. This is one of few texts that provides comprehensive coverage of body composition research. The primary intent is to present current information on research methods. This book can serve as a textbook for those who are students or new researchers. Descriptions of various methods and background information are imparted in great detail with numerous references. New chapters address energy expenditure, animal body composition, molecular genetics and body composition as it relates to disease states of cancer, HIV, obesity and certain inflammatory diseases like rheumatoid arthritis, inflammatory bowel disease, congestive heart failure and chronic obstructive pulmonary disease. This book is recommended for students and new researchers in the field of body composition research who need to learn various methods, histories and practical applications--Publisher's description.
Book Synopsis Cell Culture Engineering by : Gyun Min Lee
Download or read book Cell Culture Engineering written by Gyun Min Lee and published by John Wiley & Sons. This book was released on 2020-01-13 with total page 436 pages. Available in PDF, EPUB and Kindle. Book excerpt: Offers a comprehensive overview of cell culture engineering, providing insight into cell engineering, systems biology approaches and processing technology In Cell Culture Engineering: Recombinant Protein Production, editors Gyun Min Lee and Helene Faustrup Kildegaard assemble top class authors to present expert coverage of topics such as: cell line development for therapeutic protein production; development of a transient gene expression upstream platform; and CHO synthetic biology. They provide readers with everything they need to know about enhancing product and bioprocess attributes using genome-scale models of CHO metabolism; omics data and mammalian systems biotechnology; perfusion culture; and much more. This all-new, up-to-date reference covers all of the important aspects of cell culture engineering, including cell engineering, system biology approaches, and processing technology. It describes the challenges in cell line development and cell engineering, e.g. via gene editing tools like CRISPR/Cas9 and with the aim to engineer glycosylation patterns. Furthermore, it gives an overview about synthetic biology approaches applied to cell culture engineering and elaborates the use of CHO cells as common cell line for protein production. In addition, the book discusses the most important aspects of production processes, including cell culture media, batch, fed-batch, and perfusion processes as well as process analytical technology, quality by design, and scale down models. -Covers key elements of cell culture engineering applied to the production of recombinant proteins for therapeutic use -Focuses on mammalian and animal cells to help highlight synthetic and systems biology approaches to cell culture engineering, exemplified by the widely used CHO cell line -Part of the renowned "Advanced Biotechnology" book series Cell Culture Engineering: Recombinant Protein Production will appeal to biotechnologists, bioengineers, life scientists, chemical engineers, and PhD students in the life sciences.
Book Synopsis Multi-Scale Integrated Analysis of Agroecosystems by : Mario Giampietro
Download or read book Multi-Scale Integrated Analysis of Agroecosystems written by Mario Giampietro and published by CRC Press. This book was released on 2003-11-24 with total page 471 pages. Available in PDF, EPUB and Kindle. Book excerpt: Ecologists, agronomists, and others who may question the validity of current models for determining sustainable growth of agroecosystems, need a new set of analytical tools that more effectively address the complex nature of related processes. Those who challenge traditional assumptions of optimization and static factors in agricultural modeling de
Book Synopsis Systems Biology and Bioinformatics in Gastroenterology and Hepatology by : Steven Dooley
Download or read book Systems Biology and Bioinformatics in Gastroenterology and Hepatology written by Steven Dooley and published by Frontiers Media SA. This book was released on 2020-01-03 with total page 291 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Evolution of Translational Omics by : Institute of Medicine
Download or read book Evolution of Translational Omics written by Institute of Medicine and published by National Academies Press. This book was released on 2012-09-13 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Technologies collectively called omics enable simultaneous measurement of an enormous number of biomolecules; for example, genomics investigates thousands of DNA sequences, and proteomics examines large numbers of proteins. Scientists are using these technologies to develop innovative tests to detect disease and to predict a patient's likelihood of responding to specific drugs. Following a recent case involving premature use of omics-based tests in cancer clinical trials at Duke University, the NCI requested that the IOM establish a committee to recommend ways to strengthen omics-based test development and evaluation. This report identifies best practices to enhance development, evaluation, and translation of omics-based tests while simultaneously reinforcing steps to ensure that these tests are appropriately assessed for scientific validity before they are used to guide patient treatment in clinical trials.
Download or read book Mechanobiology written by Glen L. Niebur and published by Elsevier. This book was released on 2019-12-01 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mechanobiology: From Molecular Sensing to Disease will provide a review of the current state of understanding of mechanobiology and its role in health and disease. It covers: Current understanding of the main molecular pathways by which cells sense and respond to mechanical stimuli, A review of diseases that with known or purported mechanobiological underpinnings; The role of mechanobiology in tissue engineering and regenerative medicine; Experimental methods to capture mechanobiological phenomena; Computational models in mechanobiology. Presents our current understanding of the main molecular pathways by which cells sense and respond to mechanical stimuli Provides a review of diseases with known or purported mechanobiological underpinnings Includes the role of mechanobiology in tissue engineering and regenerative medicine Covers experimental methods to capture mechanobiological phenomena
Book Synopsis Anatomy and Physiology by : J. Gordon Betts
Download or read book Anatomy and Physiology written by J. Gordon Betts and published by . This book was released on 2013-04-25 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Concepts of Biology by : Samantha Fowler
Download or read book Concepts of Biology written by Samantha Fowler and published by . This book was released on 2018-01-07 with total page 618 pages. Available in PDF, EPUB and Kindle. Book excerpt: Concepts of Biology is designed for the single-semester introduction to biology course for non-science majors, which for many students is their only college-level science course. As such, this course represents an important opportunity for students to develop the necessary knowledge, tools, and skills to make informed decisions as they continue with their lives. Rather than being mired down with facts and vocabulary, the typical non-science major student needs information presented in a way that is easy to read and understand. Even more importantly, the content should be meaningful. Students do much better when they understand why biology is relevant to their everyday lives. For these reasons, Concepts of Biology is grounded on an evolutionary basis and includes exciting features that highlight careers in the biological sciences and everyday applications of the concepts at hand.We also strive to show the interconnectedness of topics within this extremely broad discipline. In order to meet the needs of today's instructors and students, we maintain the overall organization and coverage found in most syllabi for this course. A strength of Concepts of Biology is that instructors can customize the book, adapting it to the approach that works best in their classroom. Concepts of Biology also includes an innovative art program that incorporates critical thinking and clicker questions to help students understand--and apply--key concepts.
Book Synopsis Handbook of Biomarkers and Precision Medicine by : Claudio Carini
Download or read book Handbook of Biomarkers and Precision Medicine written by Claudio Carini and published by CRC Press. This book was released on 2019-04-16 with total page 631 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The field of Biomarkers and Precision Medicine in drug development is rapidly evolving and this book presents a snapshot of exciting new approaches. By presenting a wide range of biomarker applications, discussed by knowledgeable and experienced scientists, readers will develop an appreciation of the scope and breadth of biomarker knowledge and find examples that will help them in their own work." -Maria Freire, Foundation for the National Institutes of Health Handbook of Biomarkers and Precision Medicine provides comprehensive insights into biomarker discovery and development which has driven the new era of Precision Medicine. A wide variety of renowned experts from government, academia, teaching hospitals, biotechnology and pharmaceutical companies share best practices, examples and exciting new developments. The handbook aims to provide in-depth knowledge to research scientists, students and decision makers engaged in Biomarker and Precision Medicine-centric drug development. Features: Detailed insights into biomarker discovery, validation and diagnostic development with implementation strategies Lessons-learned from successful Precision Medicine case studies A variety of exciting and emerging biomarker technologies The next frontiers and future challenges of biomarkers in Precision Medicine Claudio Carini, Mark Fidock and Alain van Gool are internationally recognized as scientific leaders in Biomarkers and Precision Medicine. They have worked for decades in academia and pharmaceutical industry in EU, USA and Asia. Currently, Dr. Carini is Honorary Faculty at Kings’s College School of Medicine, London, UK. Dr. Fidock is Vice President of Precision Medicine Laboratories at AstraZeneca, Cambridge, UK. Prof.dr. van Gool is Head Translational Metabolic Laboratory at Radboud university medical school, Nijmegen, NL.
Download or read book Virtual You written by Peter Coveney and published by Princeton University Press. This book was released on 2023-03-28 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: The visionary science behind the digital human twins that will enhance our health and our future Virtual You is a panoramic account of efforts by scientists around the world to build digital twins of human beings, from cells and tissues to organs and whole bodies. These virtual copies will usher in a new era of personalized medicine, one in which your digital twin can help predict your risk of disease, participate in virtual drug trials, shed light on the diet and lifestyle changes that are best for you, and help identify therapies to enhance your well-being and extend your lifespan—but thorny challenges remain. In this deeply illuminating book, Peter Coveney and Roger Highfield reveal what it will take to build a virtual, functional copy of a person in five steps. Along the way, they take you on a fantastic voyage through the complexity of the human body, describing the latest scientific and technological advances—from multiscale modeling to extraordinary new forms of computing—that will make “virtual you” a reality, while also considering the ethical questions inherent to realizing truly predictive medicine. With an incisive foreword by Nobel Prize–winning biologist Venki Ramakrishnan, Virtual You is science at its most astounding, showing how our virtual twins and even whole populations of virtual humans promise to transform our health and our lives in the coming decades.
Book Synopsis The Metabolic and Molecular Basis of Acquired Disease by : R. D. Cohen
Download or read book The Metabolic and Molecular Basis of Acquired Disease written by R. D. Cohen and published by . This book was released on 1990 with total page 1260 pages. Available in PDF, EPUB and Kindle. Book excerpt:
