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A Many Branched Tree
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Book Synopsis Tree Thinking: An Introduction to Phylogenetic Biology by : David A. Baum
Download or read book Tree Thinking: An Introduction to Phylogenetic Biology written by David A. Baum and published by Roberts. This book was released on 2012-08-10 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Baum and Smith, both professors evolutionary biology and researchers in the field of systematics, present this highly accessible introduction to phylogenetics and its importance in modern biology. Ever since Darwin, the evolutionary histories of organisms have been portrayed in the form of branching trees or “phylogenies.” However, the broad significance of the phylogenetic trees has come to be appreciated only quite recently. Phylogenetics has myriad applications in biology, from discovering the features present in ancestral organisms, to finding the sources of invasive species and infectious diseases, to identifying our closest living (and extinct) hominid relatives. Taking a conceptual approach, Tree Thinking introduces readers to the interpretation of phylogenetic trees, how these trees can be reconstructed, and how they can be used to answer biological questions. Examples and vivid metaphors are incorporated throughout, and each chapter concludes with a set of problems, valuable for both students and teachers. Tree Thinking is must-have textbook for any student seeking a solid foundation in this fundamental area of evolutionary biology.
Book Synopsis International Code of Phylogenetic Nomenclature (PhyloCode) by : Kevin de Queiroz
Download or read book International Code of Phylogenetic Nomenclature (PhyloCode) written by Kevin de Queiroz and published by CRC Press. This book was released on 2020-04-29 with total page 101 pages. Available in PDF, EPUB and Kindle. Book excerpt: The PhyloCode is a set of principles, rules, and recommendations governing phylogenetic nomenclature, a system for naming taxa by explicit reference to phylogeny. In contrast, the current botanical, zoological, and bacteriological codes define taxa by reference to taxonomic ranks (e.g., family, genus) and types. This code will govern the names of clades; species names will still be governed by traditional codes. The PhyloCode is designed so that it can be used concurrently with the rank-based codes. It is not meant to replace existing names but to provide an alternative system for governing the application of both existing and newly proposed names. Key Features Provides clear regulations for naming clades Based on expressly phylogenetic principles Complements existing codes of nomenclature Eliminates the reliance on taxonomic ranks in favor of phylogenetic relationships Related Titles: Rieppel, O. Phylogenetic Systematics: Haeckel to Hennig (ISBN 978-1-4987-5488-0) de Queiroz, K., Cantino, P. D. and Gauthier, J. A. Phylonyms: A Companion to the PhyloCode (ISBN 978-1-138-33293-5).
Book Synopsis Basic Applied Bioinformatics by : Chandra Sekhar Mukhopadhyay
Download or read book Basic Applied Bioinformatics written by Chandra Sekhar Mukhopadhyay and published by John Wiley & Sons. This book was released on 2017-09-15 with total page 554 pages. Available in PDF, EPUB and Kindle. Book excerpt: An accessible guide that introduces students in all areas of life sciences to bioinformatics Basic Applied Bioinformatics provides a practical guidance in bioinformatics and helps students to optimize parameters for data analysis and then to draw accurate conclusions from the results. In addition to parameter optimization, the text will also familiarize students with relevant terminology. Basic Applied Bioinformatics is written as an accessible guide for graduate students studying bioinformatics, biotechnology, and other related sub-disciplines of the life sciences. This accessible text outlines the basics of bioinformatics, including pertinent information such as downloading molecular sequences (nucleotide and protein) from databases; BLAST analyses; primer designing and its quality checking, multiple sequence alignment (global and local using freely available software); phylogenetic tree construction (using UPGMA, NJ, MP, ME, FM algorithm and MEGA7 suite), prediction of protein structures and genome annotation, RNASeq data analyses and identification of differentially expressed genes and similar advanced bioinformatics analyses. The authors Chandra Sekhar Mukhopadhyay, Ratan Kumar Choudhary, and Mir Asif Iquebal are noted experts in the field and have come together to provide an updated information on bioinformatics. Salient features of this book includes: Accessible and updated information on bioinformatics tools A practical step-by-step approach to molecular-data analyses Information pertinent to study a variety of disciplines including biotechnology, zoology, bioinformatics and other related fields Worked examples, glossary terms, problems and solutions Basic Applied Bioinformatics gives students studying bioinformatics, agricultural biotechnology, animal biotechnology, medical biotechnology, microbial biotechnology, and zoology an updated introduction to the growing field of bioinformatics.
Book Synopsis Bayesian Phylogenetics by : Ming-Hui Chen
Download or read book Bayesian Phylogenetics written by Ming-Hui Chen and published by CRC Press. This book was released on 2014-05-27 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: Offering a rich diversity of models, Bayesian phylogenetics allows evolutionary biologists, systematists, ecologists, and epidemiologists to obtain answers to very detailed phylogenetic questions. Suitable for graduate-level researchers in statistics and biology, Bayesian Phylogenetics: Methods, Algorithms, and Applications presents a snapshot of current trends in Bayesian phylogenetic research. Encouraging interdisciplinary research, this book introduces state-of-the-art phylogenetics to the Bayesian statistical community and, likewise, presents state-of-the-art Bayesian statistics to the phylogenetics community. The book emphasizes model selection, reflecting recent interest in accurately estimating marginal likelihoods. It also discusses new approaches to improve mixing in Bayesian phylogenetic analyses in which the tree topology varies. In addition, the book covers divergence time estimation, biologically realistic models, and the burgeoning interface between phylogenetics and population genetics.
Book Synopsis In Defense of Plants by : Matt Candeias
Download or read book In Defense of Plants written by Matt Candeias and published by Mango Media Inc.. This book was released on 2021-03-16 with total page 297 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Study of Plants in a Whole New Light “Matt Candeias succeeds in evoking the wonder of plants with wit and wisdom.” ―James T. Costa, PhD, executive director, Highlands Biological Station and author of Darwin's Backyard #1 New Release in Nature & Ecology, Plants, Botany, Horticulture, Trees, Biological Sciences, and Nature Writing & Essays In his debut book, internationally-recognized blogger and podcaster Matt Candeias celebrates the nature of plants and the extraordinary world of plant organisms. A botanist’s defense. Since his early days of plant restoration, this amateur plant scientist has been enchanted with flora and the greater environmental ecology of the planet. Now, he looks at the study of plants through the lens of his ever-growing houseplant collection. Using gardening, houseplants, and examples of plants around you, In Defense of Plants changes your relationship with the world from the comfort of your windowsill. The ruthless, horny, and wonderful nature of plants. Understand how plants evolve and live on Earth with a never-before-seen look into their daily drama. Inside, Candeias explores the incredible ways plants live, fight, have sex, and conquer new territory. Whether a blossoming botanist or a professional plant scientist, In Defense of Plants is for anyone who sees plants as more than just static backdrops to more charismatic life forms. In this easily accessible introduction to the incredible world of plants, you’ll find: • Fantastic botanical histories and plant symbolism • Passionate stories of flora diversity and scientific names of plant organisms • Personal tales of plantsman discovery through the study of plants If you enjoyed books like The Botany of Desire, What a Plant Knows, or The Soul of an Octopus, then you’ll love In Defense of Plants.
Download or read book The Tangled Tree written by David Quammen and published by Simon & Schuster. This book was released on 2019-08-06 with total page 480 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this New York Times bestseller and longlist nominee for the National Book Award, “our greatest living chronicler of the natural world” (The New York Times), David Quammen explains how recent discoveries in molecular biology affect our understanding of evolution and life’s history. In the mid-1970s, scientists began using DNA sequences to reexamine the history of all life. Perhaps the most startling discovery to come out of this new field—the study of life’s diversity and relatedness at the molecular level—is horizontal gene transfer (HGT), or the movement of genes across species lines. It turns out that HGT has been widespread and important; we now know that roughly eight percent of the human genome arrived sideways by viral infection—a type of HGT. In The Tangled Tree, “the grandest tale in biology….David Quammen presents the science—and the scientists involved—with patience, candor, and flair” (Nature). We learn about the major players, such as Carl Woese, the most important little-known biologist of the twentieth century; Lynn Margulis, the notorious maverick whose wild ideas about “mosaic” creatures proved to be true; and Tsutomu Wantanabe, who discovered that the scourge of antibiotic-resistant bacteria is a direct result of horizontal gene transfer, bringing the deep study of genome histories to bear on a global crisis in public health. “David Quammen proves to be an immensely well-informed guide to a complex story” (The Wall Street Journal). In The Tangled Tree, he explains how molecular studies of evolution have brought startling recognitions about the tangled tree of life—including where we humans fit upon it. Thanks to new technologies, we now have the ability to alter even our genetic composition—through sideways insertions, as nature has long been doing. “The Tangled Tree is a source of wonder….Quammen has written a deep and daring intellectual adventure” (The Boston Globe).
Book Synopsis Random Discrete Structures by : David Aldous
Download or read book Random Discrete Structures written by David Aldous and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt: The articles in this volume present the state of the art in a variety of areas of discrete probability, including random walks on finite and infinite graphs, random trees, renewal sequences, Stein's method for normal approximation and Kohonen-type self-organizing maps. This volume also focuses on discrete probability and its connections with the theory of algorithms. Classical topics in discrete mathematics are represented as are expositions that condense and make readable some recent work on Markov chains, potential theory and the second moment method. This volume is suitable for mathematicians and students.
Book Synopsis Concepts of Biology by : Samantha Fowler
Download or read book Concepts of Biology written by Samantha Fowler and published by . This book was released on 2023-05-12 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Black & white print. Concepts of Biology is designed for the typical introductory biology course for nonmajors, covering standard scope and sequence requirements. The text includes interesting applications and conveys the major themes of biology, with content that is meaningful and easy to understand. The book is designed to demonstrate biology concepts and to promote scientific literacy.
Book Synopsis The Natural Navigator by : Tristan Gooley
Download or read book The Natural Navigator written by Tristan Gooley and published by The Experiment. This book was released on 2012-06-05 with total page 320 pages. Available in PDF, EPUB and Kindle. Book excerpt: From the New York Times-bestselling author of The Secret World of Weather and The Lost Art of Reading Nature’s Signs, learn to tap into nature and notice the hidden clues all around you Before GPS, before the compass, and even before cartography, humankind was navigating. Now this singular guide helps us rediscover what our ancestors long understood—that a windswept tree, the depth of a puddle, or a trill of birdsong can help us find our way, if we know what to look and listen for. Adventurer and navigation expert Tristan Gooley unlocks the directional clues hidden in the sun, moon, stars, clouds, weather patterns, lengthening shadows, changing tides, plant growth, and the habits of wildlife. Rich with navigational anecdotes collected across ages, continents, and cultures, The Natural Navigator will help keep you on course and open your eyes to the wonders, large and small, of the natural world.
Download or read book Saplings written by Noel Streatfeild and published by Persephone Books. This book was released on 2009 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: "First published in 1945 by Collins"--Copyright page.
Book Synopsis The Trees of San Francisco by : Michael Sullivan
Download or read book The Trees of San Francisco written by Michael Sullivan and published by Pomegranate. This book was released on 2004 with total page 172 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mike Sullivan loves his adopted city of San Francisco, and he loves trees. In The Trees of San Francisco he has combined his passions, offering a striking and handy compendium of botanical information, historical tidbits, cultivation hints, and more. Sullivan's introduction details the history of trees in the city, a fairly recent phenomenon. The text then piques the reader's interest with discussions of 71 city trees. Each tree is illustrated with a photograph--with its common and scientific names prominently displayed--and its specific location within San Francisco, along with other sites; frequently a close-up shot of the tree is included. Sprinkled throughout are 13 sidelights relating to trees; among the topics are the city's wild parrots and the trees they love; an overview of the objectives of the Friends of the Urban Forest; and discussions about the link between Australia's trees and those in the city, such as the eucalyptus. The second part of the book gets the reader up and about, walking the city to see its trees. Full-page color maps accompany the seven detailed tours, outlining the routes; interesting factoids are interspersed throughout the directions. A two-page color map of San Francisco then highlights 25 selected neighborhoods ideal for viewing trees, leading into a checklist of the neighborhoods and their trees.
Book Synopsis Trees of Life by : Theodore W. Pietsch
Download or read book Trees of Life written by Theodore W. Pietsch and published by JHU Press. This book was released on 2013-07 with total page 373 pages. Available in PDF, EPUB and Kindle. Book excerpt: Evolution.
Book Synopsis The Phylogenetic Handbook by : Marco Salemi
Download or read book The Phylogenetic Handbook written by Marco Salemi and published by Cambridge University Press. This book was released on 2009-03-26 with total page 750 pages. Available in PDF, EPUB and Kindle. Book excerpt: A broad, hands on guide with detailed explanations of current methodology, relevant exercises and popular software tools.
Download or read book Insect Phylogeny written by Willi Hennig and published by John Wiley & Sons. This book was released on 1981 with total page 552 pages. Available in PDF, EPUB and Kindle. Book excerpt: Methodological introduction; Localities for palaeozoic and mesozoic insects; The phyloggenetic development of the insecta; Concluding remarks and prospects for the future.
Book Synopsis The Hidden Life of Trees: What They Feel, How They Communicate by : Peter Wohlleben
Download or read book The Hidden Life of Trees: What They Feel, How They Communicate written by Peter Wohlleben and published by HarperCollins UK. This book was released on 2017-08-24 with total page 263 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sunday Times Bestseller‘A paradigm-smashing chronicle of joyous entanglement’ Charles Foster Waterstones Non-Fiction Book of the Month (September) Are trees social beings? How do trees live? Do they feel pain or have awareness of their surroundings?
Download or read book The Book of Trees written by Manuel Lima and published by Princeton Architectural Press. This book was released on 2014-04-08 with total page 208 pages. Available in PDF, EPUB and Kindle. Book excerpt: Our critically acclaimed bestseller Visual Complexity was the first in-depth examination of the burgeoning field of information visualization. Particularly noteworthy are the numerous historical examples of past efforts to make sense of complex systems of information. In this new companion volume, The Book of Trees, data viz expert Manuel Lima examines the more than eight hundred year history of the tree diagram, from its roots in the illuminated manuscripts of medieval monasteries to its current resurgence as an elegant means of visualization. Lima presents two hundred intricately detailed tree diagram illustrations on a remarkable variety of subjects—from some of the earliest known examples from ancient Mesopotamia to the manuscripts of medieval monasteries to contributions by leading contemporary designers. A timeline of capsule biographies on key figures in the development of the tree diagram rounds out this one-of-a-kind visual compendium.
Book Synopsis A Branch from the Lightning Tree by : Martin Shaw
Download or read book A Branch from the Lightning Tree written by Martin Shaw and published by . This book was released on 2011 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt: A BRANCH FROM THE LIGHTNING TREE is centered around several key elements: 1. It features four texts and commentaries ? Welsh, Russian, Siberian and Norwegian myths that explore the process of leaving what is considered safe and predictable and journeying out into wild, uncertain areas of nature and the psyche in search of new insights. The four stories have at their center a man, woman, and adolescent. 2. A narrative of why the author gave up a large musical publishing deal with Warner Brothers to spend four years living in a tent in the wilds and over a decade facilitating wilderness rites-of-passage for others. 3. Shaw's eloquent insistence that without a renewed attention to myth and the initiation process we are only partially equipped to reestablish a complementary relationship with the living world. 4. The core of these stories are paradoxical in nature, far from the clumsily perceived ?hero' myths, and point towards Trickster, or Coyote, as a way of existing in a world ambivalent to the insights of what you could call traditional knowledge. A BRANCH FROM THE LIGHTNING TREE is unique in the field of myth and ritual in several ways: 1. It carries an ?in-the-field' narrative of several hundred men and women who have gone out into wild places to fast for four days and nights. Not in the Amazon, or in Mongolia, but in a place that is indigenous to them, that grounds the experience in the wider context of their lives, rather than a one-off event that can be hard to reconnect with. This is part of a growing mood to get to the bones of initiatory experience, rather than the cultural affectations. The stories illustrate both the grandeur and struggle of this often subtle process. 2. Unlike many of the big mythological sellers (i.e Bly's IRON JOHN or Pinkola Estes WOMEN WHO RUN WITH WOLVES), A BRANCH FROM THE LIGHTNING TREE is not a gender piece, but focuses on both men and women's movement into wildness as part of the bigger awareness of climate change and ecology. It presents the old stories as keys into any debate on these issues, that the ability to think metaphorically/mythologically loosens the grip of literalness, and can ?re-enchant' our perspectives. 3. As a wilderness teacher Shaw has noticed that the real point of crisis that is emerging is the return to community, rather than the time out in the wild. This is turning of rites-of-passage on its head: Shaw reasons that the rites-of-passage process requires three stages following an initial Call to the Soul: (i) Going out of the Village, and the severance from ordinary life and the stepping into the image-laden language of myth, story, ritual; (ii) Into the Forest, baring the soul to extraordinary forces, receiving the sacred wound, bonding with the living world; (iii) And Back Again, return to community, the performance of identity, and the confirmation in and of the Soul. A BRANCH FROM THE LIGHTNING TREE invokes Robert Graves work on the White Goddess, and the Crow poems of Ted Hughes-it is a combination of practical knowledge, imaginative insight and passionate storytelling that gives Shaw's book its persuasiveness and power. At times incantatory, at times novelistic and poetic, he writes as someone who has been to these places, undergone these trials and tested himself at the extremes of lived experience.
