A Hidden Markov Model That Finds Genes In E Coli Dna

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Hidden Markov Models for Bioinformatics

Author : T. Koski
Publisher : Springer Science & Business Media
ISBN 13 : 9781402001369
Total Pages : 420 pages
Book Rating : 4.0/5 (13 download)

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Book Synopsis Hidden Markov Models for Bioinformatics by : T. Koski

Download or read book Hidden Markov Models for Bioinformatics written by T. Koski and published by Springer Science & Business Media. This book was released on 2001-11-30 with total page 420 pages. Available in PDF, EPUB and Kindle. Book excerpt: The purpose of this book is to give a thorough and systematic introduction to probabilistic modeling in bioinformatics. The book contains a mathematically strict and extensive presentation of the kind of probabilistic models that have turned out to be useful in genome analysis. Questions of parametric inference, selection between model families, and various architectures are treated. Several examples are given of known architectures (e.g., profile HMM) used in genome analysis. Audience: This book will be of interest to advanced undergraduate and graduate students with a fairly limited background in probability theory, but otherwise well trained in mathematics and already familiar with at least some of the techniques of algorithmic sequence analysis.

A Hidden Markov Model that Finds Genes in E. Coli DNA

Author : Anders Krogh
Publisher :
ISBN 13 :
Total Pages : 30 pages
Book Rating : 4.:/5 (321 download)

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Book Synopsis A Hidden Markov Model that Finds Genes in E. Coli DNA by : Anders Krogh

Download or read book A Hidden Markov Model that Finds Genes in E. Coli DNA written by Anders Krogh and published by . This book was released on 1994 with total page 30 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Comparative Gene Finding

Author : Marina Axelson-Fisk
Publisher : Springer
ISBN 13 : 1447166930
Total Pages : 382 pages
Book Rating : 4.4/5 (471 download)

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Book Synopsis Comparative Gene Finding by : Marina Axelson-Fisk

Download or read book Comparative Gene Finding written by Marina Axelson-Fisk and published by Springer. This book was released on 2015-04-13 with total page 382 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents a guide to building computational gene finders, and describes the state of the art in computational gene finding methods, with a focus on comparative approaches. Fully updated and expanded, this new edition examines next-generation sequencing (NGS) technology. The book also discusses conditional random fields, enhancing the broad coverage of topics spanning probability theory, statistics, information theory, optimization theory and numerical analysis. Features: introduces the fundamental terms and concepts in the field; discusses algorithms for single-species gene finding, and approaches to pairwise and multiple sequence alignments, then describes how the strengths in both areas can be combined to improve the accuracy of gene finding; explores the gene features most commonly captured by a computational gene model, and explains the basics of parameter training; illustrates how to implement a comparative gene finder; examines NGS techniques and how to build a genome annotation pipeline.

Molecular Biomethods Handbook

Author : John M. Walker
Publisher : Springer Science & Business Media
ISBN 13 : 1603273751
Total Pages : 1105 pages
Book Rating : 4.6/5 (32 download)

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Book Synopsis Molecular Biomethods Handbook by : John M. Walker

Download or read book Molecular Biomethods Handbook written by John M. Walker and published by Springer Science & Business Media. This book was released on 2008-11-04 with total page 1105 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in the biosciences have led to a range of powerful new technologies, particularly nucleic acid, protein and cell-based methodologies. The most recent insights have come to affect how scientists investigate and define cellular processes at the molecular level. This book expands upon the techniques included in the first edition, providing theory, outlines of practical procedures, and applications for a range of techniques. Written by a well-established panel of research scientists, the book provides an up-to-date collection of methods used regularly in the authors’ own research programs.

Modern Genome Annotation

Author : D. Frishman
Publisher : Springer Science & Business Media
ISBN 13 : 3211751238
Total Pages : 491 pages
Book Rating : 4.2/5 (117 download)

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Book Synopsis Modern Genome Annotation by : D. Frishman

Download or read book Modern Genome Annotation written by D. Frishman and published by Springer Science & Business Media. This book was released on 2009-10-02 with total page 491 pages. Available in PDF, EPUB and Kindle. Book excerpt: An accurate description of current scientific developments in the field of bioinformatics and computational implementation is presented by research of the BioSapiens Network of Excellence. Bioinformatics is essential for annotating the structure and function of genes, proteins and the analysis of complete genomes and to molecular biology and biochemistry. Included is an overview of bioinformatics, the full spectrum of genome annotation approaches including; genome analysis and gene prediction, gene regulation analysis and expression, genome variation and QTL analysis, large scale protein annotation of function and structure, annotation and prediction of protein interactions, and the organization and annotation of molecular networks and biochemical pathways. Also covered is a technical framework to organize and represent genome data using the DAS technology and work in the annotation of two large genomic sets: HIV/HCV viral genomes and splicing alternatives potentially encoded in 1% of the human genome.

Theoretical and Computational Methods in Genome Research

Author : Sándor Suhai
Publisher : Springer Science & Business Media
ISBN 13 : 1461559030
Total Pages : 332 pages
Book Rating : 4.4/5 (615 download)

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Book Synopsis Theoretical and Computational Methods in Genome Research by : Sándor Suhai

Download or read book Theoretical and Computational Methods in Genome Research written by Sándor Suhai and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: The application ofcomputational methods to solve scientific and practical problems in genome research created a new interdisciplinary area that transcends boundaries tradi tionally separating genetics, biology, mathematics, physics, and computer science. Com puters have, of course, been intensively used in the field of life sciences for many years, even before genome research started, to store and analyze DNA or protein sequences; to explore and model the three-dimensional structure, the dynamics, and the function of biopolymers; to compute genetic linkage or evolutionary processes; and more. The rapid development of new molecular and genetic technologies, combined with ambitious goals to explore the structure and function ofgenomes ofhigher organisms, has generated, how ever, not only a huge and exponentially increasing body of data but also a new class of scientific questions. The nature and complexity of these questions will also require, be yond establishing a new kind ofalliance between experimental and theoretical disciplines, the development of new generations both in computer software and hardware technolo gies. New theoretical procedures, combined with powerful computational facilities, will substantially extend the horizon of problems that genome research can attack with suc cess. Many of us still feel that computational models rationalizing experimental findings in genome research fulfill their promises more slowly than desired. There is also an uncer tainty concerning the real position of a "theoretical genome research" in the network of established disciplines integrating their efforts in this field.

Medical BioMethods Handbook

Author : John M. Walker
Publisher : Springer Science & Business Media
ISBN 13 : 1592598706
Total Pages : 644 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Medical BioMethods Handbook by : John M. Walker

Download or read book Medical BioMethods Handbook written by John M. Walker and published by Springer Science & Business Media. This book was released on 2007-10-09 with total page 644 pages. Available in PDF, EPUB and Kindle. Book excerpt: John Walker and Ralph Rapley have collected a wide-ranging group of molecular and biochemical techniques that are the most frequently used in medical and clinical research, especially diagnostics. The authors-well-established investigators who run their own research programs and use the methods on a regular basis-outline the practical procedures for using them and describe a variety of pertinent applications. Among the technologies presented are southern and western blotting, electrophoresis, PCR, cDNA and protein microarrays, liquid chromatography, in situ hybridization, karyotyping, flow cytometry, bioinformatics, genomics, and ribotyping. The applications include assays for mutation detection, mRNA analysis, chromosome translocations, inborn errors of metabolism, protein therapeutics, and gene therapy.

Biocomputing '98 - Proceedings Of The Pacific Symposium

Author : Teri E Klein
Publisher : World Scientific
ISBN 13 : 9814545570
Total Pages : 784 pages
Book Rating : 4.8/5 (145 download)

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Book Synopsis Biocomputing '98 - Proceedings Of The Pacific Symposium by : Teri E Klein

Download or read book Biocomputing '98 - Proceedings Of The Pacific Symposium written by Teri E Klein and published by World Scientific. This book was released on 1997-12-16 with total page 784 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Pacific Symposium on Biocomputing brings together key researchers from the international biocomputing community. PSB is designed to be maximally responsive to the need for critical mass in subdisciplines within biocomputing. These proceedings contain peer-reviewed articles in computational biology.

Essentials of Genomics and Bioinformatics

Author : Christoph W. Sensen
Publisher : John Wiley & Sons
ISBN 13 : 3527612653
Total Pages : 442 pages
Book Rating : 4.5/5 (276 download)

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Book Synopsis Essentials of Genomics and Bioinformatics by : Christoph W. Sensen

Download or read book Essentials of Genomics and Bioinformatics written by Christoph W. Sensen and published by John Wiley & Sons. This book was released on 2008-09-26 with total page 442 pages. Available in PDF, EPUB and Kindle. Book excerpt: Provides an overview of the rapidly evolving field of genomics with coverage of nucleic acid technologies, proteomics and bioinformatics. It includes chapters on applications in human health, agriculture and comparative genomics and also contains two chapters on the legal and ethical issues of genomics, a topic that is becoming increasingly important as genomics moves out of the laboratory into practical applications.

Statistical Advances in Biosciences and Bioinformatics

Author : International Biometric Society. Indian Region. Conference
Publisher : Allied Publishers
ISBN 13 : 9788177649680
Total Pages : 324 pages
Book Rating : 4.6/5 (496 download)

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Book Synopsis Statistical Advances in Biosciences and Bioinformatics by : International Biometric Society. Indian Region. Conference

Download or read book Statistical Advances in Biosciences and Bioinformatics written by International Biometric Society. Indian Region. Conference and published by Allied Publishers. This book was released on 2006 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: Papers presented at the conference, held during 23-27 Nov. 2003, at Banaras Hindu University, Varanasi.

Biological Sequence Analysis

Author : Richard Durbin
Publisher : Cambridge University Press
ISBN 13 : 113945739X
Total Pages : 372 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Biological Sequence Analysis by : Richard Durbin

Download or read book Biological Sequence Analysis written by Richard Durbin and published by Cambridge University Press. This book was released on 1998-04-23 with total page 372 pages. Available in PDF, EPUB and Kindle. Book excerpt: Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and probabilistic evolutionary models for inferring phylogenies of sequences from different organisms. This book gives a unified, up-to-date and self-contained account, with a Bayesian slant, of such methods, and more generally to probabilistic methods of sequence analysis. Written by an interdisciplinary team of authors, it aims to be accessible to molecular biologists, computer scientists, and mathematicians with no formal knowledge of the other fields, and at the same time present the state-of-the-art in this new and highly important field.

Algorithms in Bioinformatics

Author : Roderic Guigo
Publisher : Springer
ISBN 13 : 3540457844
Total Pages : 554 pages
Book Rating : 4.5/5 (44 download)

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Book Synopsis Algorithms in Bioinformatics by : Roderic Guigo

Download or read book Algorithms in Bioinformatics written by Roderic Guigo and published by Springer. This book was released on 2003-06-30 with total page 554 pages. Available in PDF, EPUB and Kindle. Book excerpt: We are pleased to present the proceedings of the Second Workshop on Al- rithms in Bioinformatics (WABI 2002), which took place on September 17-21, 2002 in Rome, Italy. The WABI workshop was part of a three-conference me- ing, which, in addition to WABI, included the ESA and APPROX 2002. The three conferences are jointly called ALGO 2002, and were hosted by the F- ulty of Engineering, University of Rome “La Sapienza”. Seehttp://www.dis. uniroma1.it/ ̃algo02 for more details. The Workshop on Algorithms in Bioinformatics covers research in all areas of algorithmic work in bioinformatics and computational biology. The emphasis is on discrete algorithms that address important problems in molecular biology, genomics,andgenetics,thatarefoundedonsoundmodels,thatarecomputati- ally e?cient, and that have been implemented and tested in simulations and on real datasets. The goal is to present recent research results, including signi?cant work in progress, and to identify and explore directions of future research. Original research papers (including signi?cant work in progress) or sta- of-the-art surveys were solicited on all aspects of algorithms in bioinformatics, including, but not limited to: exact and approximate algorithms for genomics, genetics, sequence analysis, gene and signal recognition, alignment, molecular evolution, phylogenetics, structure determination or prediction, gene expression and gene networks, proteomics, functional genomics, and drug design.

Control of Uncertain Systems: Modelling, Approximation, and Design

Author : Bruce A. Francis
Publisher : Taylor & Francis
ISBN 13 : 9783540317548
Total Pages : 452 pages
Book Rating : 4.3/5 (175 download)

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Book Synopsis Control of Uncertain Systems: Modelling, Approximation, and Design by : Bruce A. Francis

Download or read book Control of Uncertain Systems: Modelling, Approximation, and Design written by Bruce A. Francis and published by Taylor & Francis. This book was released on 2006-03-07 with total page 452 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Festschrift contains a collection of articles by friends, co-authors, colleagues, and former Ph.D. students of Keith Glover, Professor of Engineering at the University of Cambridge, on the occasion of his sixtieth birthday. Professor Glover's scientific work spans a wide variety of topics, the main themes being system identification, model reduction and approximation, robust controller synthesis, and control of aircraft and engines. The articles in this volume are a tribute to Professor Glover's seminal work in these areas.

Biometric Recognition

Author : Zhisheng You
Publisher : Springer
ISBN 13 : 3319466542
Total Pages : 778 pages
Book Rating : 4.3/5 (194 download)

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Book Synopsis Biometric Recognition by : Zhisheng You

Download or read book Biometric Recognition written by Zhisheng You and published by Springer. This book was released on 2016-10-07 with total page 778 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 11th Chinese Conference on Biometric Recognition, CCBR 2016, held in Chengdu, China, in October 2016. The 84 revised full papers presented in this book were carefully reviewed and selected from 138 submissions. The papers focus on Face Recognition and Analysis; Fingerprint, Palm-print and Vascular Biometrics; Iris and Ocular Biometrics; Behavioral Biometrics; Affective Computing; Feature Extraction and Classification Theory; Anti-Spoofing and Privacy; Surveillance; and DNA and Emerging Biometrics.

Bioinformatics

Author : Andreas D. Baxevanis
Publisher : John Wiley & Sons
ISBN 13 : 1119335965
Total Pages : 648 pages
Book Rating : 4.1/5 (193 download)

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Book Synopsis Bioinformatics by : Andreas D. Baxevanis

Download or read book Bioinformatics written by Andreas D. Baxevanis and published by John Wiley & Sons. This book was released on 2020-02-12 with total page 648 pages. Available in PDF, EPUB and Kindle. Book excerpt: Praise for the third edition of Bioinformatics “This book is a gem to read and use in practice.” —Briefings in Bioinformatics "This volume has a distinctive, special value as it offers an unrivalled level of details and unique expert insights from the leading computational biologists, including the very creators of popular bioinformatics tools." —ChemBioChem “A valuable survey of this fascinating field. . . I found it to be the most useful book on bioinformatics that I have seen and recommend it very highly.” —American Society for Microbiology News “This should be on the bookshelf of every molecular biologist.” —The Quarterly Review of Biology The field of bioinformatics is advancing at a remarkable rate. With the development of new analytical techniques that make use of the latest advances in machine learning and data science, today’s biologists are gaining fantastic new insights into the natural world’s most complex systems. These rapidly progressing innovations can, however, be difficult to keep pace with. The expanded fourth edition of the best-selling Bioinformatics aims to remedy this by providing students and professionals alike with a comprehensive survey of the current field. Revised to reflect recent advances in computational biology, it offers practical instruction on the gathering, analysis, and interpretation of data, as well as explanations of the most powerful algorithms presently used for biological discovery. Bioinformatics, Fourth Edition offers the most readable, up-to-date, and thorough introduction to the field for biologists at all levels, covering both key concepts that have stood the test of time and the new and important developments driving this fast-moving discipline forwards. This new edition features: New chapters on metabolomics, population genetics, metagenomics and microbial community analysis, and translational bioinformatics A thorough treatment of statistical methods as applied to biological data Special topic boxes and appendices highlighting experimental strategies and advanced concepts Annotated reference lists, comprehensive lists of relevant web resources, and an extensive glossary of commonly used terms in bioinformatics, genomics, and proteomics Bioinformatics is an indispensable companion for researchers, instructors, and students of all levels in molecular biology and computational biology, as well as investigators involved in genomics, clinical research, proteomics, and related fields.

Current Topics in Computational Molecular Biology

Author : Tao Jiang
Publisher : MIT Press
ISBN 13 : 9780262100922
Total Pages : 570 pages
Book Rating : 4.1/5 (9 download)

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Book Synopsis Current Topics in Computational Molecular Biology by : Tao Jiang

Download or read book Current Topics in Computational Molecular Biology written by Tao Jiang and published by MIT Press. This book was released on 2002 with total page 570 pages. Available in PDF, EPUB and Kindle. Book excerpt: A survey of current topics in computational molecular biology. Computational molecular biology, or bioinformatics, draws on the disciplines of biology, mathematics, statistics, physics, chemistry, computer science, and engineering. It provides the computational support for functional genomics, which links the behavior of cells, organisms, and populations to the information encoded in the genomes, as well as for structural genomics. At the heart of all large-scale and high-throughput biotechnologies, it has a growing impact on health and medicine. This survey of computational molecular biology covers traditional topics such as protein structure modeling and sequence alignment, and more recent ones such as expression data analysis and comparative genomics. It combines algorithmic, statistical, database, and AI-based methods for studying biological problems. The book also contains an introductory chapter, as well as one on general statistical modeling and computational techniques in molecular biology. Each chapter presents a self-contained review of a specific subject. Not for sale in China, including Hong Kong.

Computational Methods in Molecular Biology

Author : S.L. Salzberg
Publisher : Elsevier
ISBN 13 : 0080860931
Total Pages : 399 pages
Book Rating : 4.0/5 (88 download)

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Book Synopsis Computational Methods in Molecular Biology by : S.L. Salzberg

Download or read book Computational Methods in Molecular Biology written by S.L. Salzberg and published by Elsevier. This book was released on 1998-06-19 with total page 399 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational biology is a rapidly expanding field, and the number and variety of computational methods used for DNA and protein sequence analysis is growing every day. These algorithms are extremely valuable to biotechnology companies and to researchers and teachers in universities. This book explains the latest computer technology for analyzing DNA, RNA, and protein sequences. Clear and easy to follow, designed specifically for the non-computer scientist, it will help biologists make better choices on which algorithm to use. New techniques and demonstrations are elucidated, as are state-of-the-art problems, and more advanced material on the latest algorithms. The primary audience for this volume are molecular biologists working either in biotechnology companies or academic research environments, individual researchers and the institutions they work for, and students. Any biologist who relies on computers should want this book. A secondary audience will be computer scientists developing techniques with applications in biology. An excellent reference for leading techniques, it will also help introduce computer scientists to the biology problems. This is an outstanding work which will be ideal for the increasing number of scientists moving into computational biology.