Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology

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Publisher : Springer
ISBN 13 : 3662435500
Total Pages : 553 pages
Book Rating : 4.6/5 (624 download)

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Book Synopsis Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology by : László Zsolt Garamszegi

Download or read book Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology written by László Zsolt Garamszegi and published by Springer. This book was released on 2014-07-29 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetic comparative approaches are powerful analytical tools for making evolutionary inferences from interspecific data and phylogenies. The phylogenetic toolkit available to evolutionary biologists is currently growing at an incredible speed, but most methodological papers are published in the specialized statistical literature and many are incomprehensible for the user community. This textbook provides an overview of several newly developed phylogenetic comparative methods that allow to investigate a broad array of questions on how phenotypic characters evolve along the branches of phylogeny and how such mechanisms shape complex animal communities and interspecific interactions. The individual chapters were written by the leading experts in the field and using a language that is accessible for practicing evolutionary biologists. The authors carefully explain the philosophy behind different methodologies and provide pointers – mostly using a dynamically developing online interface – on how these methods can be implemented in practice. These “conceptual” and “practical” materials are essential for expanding the qualification of both students and scientists, but also offer a valuable resource for educators. Another value of the book are the accompanying online resources (available at: http://www.mpcm-evolution.com), where the authors post and permanently update practical materials to help embed methods into practice.

Phylogenetic Comparative Methods in R

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Author :
Publisher : Princeton University Press
ISBN 13 : 0691219044
Total Pages : 441 pages
Book Rating : 4.6/5 (912 download)

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Book Synopsis Phylogenetic Comparative Methods in R by : Liam J. Revell

Download or read book Phylogenetic Comparative Methods in R written by Liam J. Revell and published by Princeton University Press. This book was released on 2022-07-12 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: An authoritative introduction to the latest comparative methods in evolutionary biology Phylogenetic comparative methods are a suite of statistical approaches that enable biologists to analyze and better understand the evolutionary tree of life, and shed vital new light on patterns of divergence and common ancestry among all species on Earth. This textbook shows how to carry out phylogenetic comparative analyses in the R statistical computing environment. Liam Revell and Luke Harmon provide an incisive conceptual overview of each method along with worked examples using real data and challenge problems that encourage students to learn by doing. By working through this book, students will gain a solid foundation in these methods and develop the skills they need to interpret patterns in the tree of life. Covers every major method of modern phylogenetic comparative analysis in R Explains the basics of R and discusses topics such as trait evolution, diversification, trait-dependent diversification, biogeography, and visualization Features a wealth of exercises and challenge problems Serves as an invaluable resource for students and researchers, with applications in ecology, evolution, anthropology, disease transmission, conservation biology, and a host of other areas Written by two of today’s leading developers of phylogenetic comparative methods

Phylogenetic Comparative Methods

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Publisher :
ISBN 13 : 9781719584463
Total Pages : 286 pages
Book Rating : 4.5/5 (844 download)

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Book Synopsis Phylogenetic Comparative Methods by : Luke J. Harmon

Download or read book Phylogenetic Comparative Methods written by Luke J. Harmon and published by . This book was released on 2018-05-23 with total page 286 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to statistical analyses of phylogenetic trees using comparative methods.

Analysis of Phylogenetics and Evolution with R

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Publisher : Springer Science & Business Media
ISBN 13 : 0387351000
Total Pages : 221 pages
Book Rating : 4.3/5 (873 download)

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Book Synopsis Analysis of Phylogenetics and Evolution with R by : Emmanuel Paradis

Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis and published by Springer Science & Business Media. This book was released on 2006-11-25 with total page 221 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

New Approaches to Speciation in the Fossil Record

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Publisher : Columbia University Press
ISBN 13 : 9780231082488
Total Pages : 542 pages
Book Rating : 4.0/5 (824 download)

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Book Synopsis New Approaches to Speciation in the Fossil Record by : Douglas H. Erwin

Download or read book New Approaches to Speciation in the Fossil Record written by Douglas H. Erwin and published by Columbia University Press. This book was released on 1995 with total page 542 pages. Available in PDF, EPUB and Kindle. Book excerpt: A collection of case studies that seeks to reexamine the understanding of the speciation patterns that appear in the fossil record through an analysis of the patterns and their presumed processes. In each case, the rigorous techniques of morphological analysis, quantitative genetic analysis, phylogenetic analysis, and sedimentary completeness have been employed.

Mammalian Evolutionary Morphology

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Publisher : Springer Science & Business Media
ISBN 13 : 1402069979
Total Pages : 453 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Mammalian Evolutionary Morphology by : Eric J. Sargis

Download or read book Mammalian Evolutionary Morphology written by Eric J. Sargis and published by Springer Science & Business Media. This book was released on 2008-05-21 with total page 453 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book celebrates the contributions of Dr. Frederick S. Szalay to the field of Mammalian Evolutionary Morphology. Professor Szalay is a strong advocate for biologically and evolutionarily meaningful character analysis. He has published about 200 articles, six monographs, and six books on this subject. This book features subjects such as the evolution and adaptation of mammals and provides up-to-date articles on the evolutionary morphology of a wide range of mammalian groups.

Handbook of Trait-Based Ecology

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Publisher : Cambridge University Press
ISBN 13 : 1108472915
Total Pages : 311 pages
Book Rating : 4.1/5 (84 download)

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Book Synopsis Handbook of Trait-Based Ecology by : Francesco de Bello

Download or read book Handbook of Trait-Based Ecology written by Francesco de Bello and published by Cambridge University Press. This book was released on 2021-03-11 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: Trait-based ecology is rapidly expanding. This comprehensive and accessible guide covers the main concepts and tools in functional ecology.

Evolution of Biological Diversity

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Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (841 download)

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Book Synopsis Evolution of Biological Diversity by :

Download or read book Evolution of Biological Diversity written by and published by . This book was released on 1998 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Biodiversity Conservation and Phylogenetic Systematics

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Publisher : Springer
ISBN 13 : 3319224611
Total Pages : 396 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Biodiversity Conservation and Phylogenetic Systematics by : Roseli Pellens

Download or read book Biodiversity Conservation and Phylogenetic Systematics written by Roseli Pellens and published by Springer. This book was released on 2016-02-24 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is about phylogenetic diversity as an approach to reduce biodiversity losses in this period of mass extinction. Chapters in the first section deal with questions such as the way we value phylogenetic diversity among other criteria for biodiversity conservation; the choice of measures; the loss of phylogenetic diversity with extinction; the importance of organisms that are deeply branched in the tree of life, and the role of relict species. The second section is composed by contributions exploring methodological aspects, such as how to deal with abundance, sampling effort, or conflicting trees in analysis of phylogenetic diversity. The last section is devoted to applications, showing how phylogenetic diversity can be integrated in systematic conservation planning, in EDGE and HEDGE evaluations. This wide coverage makes the book a reference for academics, policy makers and stakeholders dealing with biodiversity conservation.

The Comparative Approach in Evolutionary Anthropology and Biology

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Publisher : University of Chicago Press
ISBN 13 : 0226608980
Total Pages : 392 pages
Book Rating : 4.2/5 (266 download)

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Book Synopsis The Comparative Approach in Evolutionary Anthropology and Biology by : Charles L. Nunn

Download or read book The Comparative Approach in Evolutionary Anthropology and Biology written by Charles L. Nunn and published by University of Chicago Press. This book was released on 2011-11-30 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: And when new fossils are found, such as those of the tiny humans of Flores, scientists compare these remains to other fossils and contemporary humans.

ORIGIN EARLY DIVERS LAND PLANT PB

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Publisher : Smithsonian Institution Scholarly Press
ISBN 13 :
Total Pages : 462 pages
Book Rating : 4.4/5 (91 download)

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Book Synopsis ORIGIN EARLY DIVERS LAND PLANT PB by : KENRICK PAUL

Download or read book ORIGIN EARLY DIVERS LAND PLANT PB written by KENRICK PAUL and published by Smithsonian Institution Scholarly Press. This book was released on 1997-08-17 with total page 462 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive application of cladistics to the massive body of data on both living and fossil plants, this book clarifies phylogenetic patterns within and among basal groups of land plants. In its analysis of the patterns and processes underlying the origin of land plants, the book sheds light on central questions surrounding the initial assembly of terrestrial ecosystems.

Neotropical Diversification: Patterns and Processes

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Publisher : Springer Nature
ISBN 13 : 3030311678
Total Pages : 816 pages
Book Rating : 4.0/5 (33 download)

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Book Synopsis Neotropical Diversification: Patterns and Processes by : Valentí Rull

Download or read book Neotropical Diversification: Patterns and Processes written by Valentí Rull and published by Springer Nature. This book was released on 2020-03-30 with total page 816 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a comprehensive overview of the patterns of biodiversity in various neotropical ecosystems, as well as a discussion on their historical biogeographies and underlying diversification processes. All chapters were written by prominent researchers in the fields of tropical biology, molecular ecology, climatology, paleoecology, and geography, producing an outstanding collection of essays, synthetic analyses, and novel investigations that describe and improve our understanding of the biodiversity of this unique region. With chapters on the Amazon and Caribbean forests, the Atlantic rainforests, the Andes, the Cerrado savannahs, the Caatinga drylands, the Chaco, and Mesoamerica – along with broad taxonomic coverage – this book summarizes a wide range of hypotheses, views, and methods concerning the processes and mechanisms of neotropical diversification. The range of perspectives presented makes the book a truly comprehensive, state-of-the-art publication on the topic, which will fascinate both scientists and general readers alike.

Parasite Diversity and Diversification

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Publisher : Cambridge University Press
ISBN 13 : 1107037654
Total Pages : 503 pages
Book Rating : 4.1/5 (7 download)

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Book Synopsis Parasite Diversity and Diversification by : Serge Morand

Download or read book Parasite Diversity and Diversification written by Serge Morand and published by Cambridge University Press. This book was released on 2015-02-26 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: By joining phylogenetics and evolutionary ecology, this book explores the patterns of parasite diversity while revealing diversification processes.

Phylogenetic Comparative Methods in R

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Publisher : Princeton University Press
ISBN 13 : 0691219036
Total Pages : 440 pages
Book Rating : 4.6/5 (912 download)

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Book Synopsis Phylogenetic Comparative Methods in R by : Liam J. Revell

Download or read book Phylogenetic Comparative Methods in R written by Liam J. Revell and published by Princeton University Press. This book was released on 2022-09-06 with total page 440 pages. Available in PDF, EPUB and Kindle. Book excerpt: An authoritative introduction to the latest comparative methods in evolutionary biology Phylogenetic comparative methods are a suite of statistical approaches that enable biologists to analyze and better understand the evolutionary tree of life, and shed vital new light on patterns of divergence and common ancestry among all species on Earth. This textbook shows how to carry out phylogenetic comparative analyses in the R statistical computing environment. Liam Revell and Luke Harmon provide an incisive conceptual overview of each method along with worked examples using real data and challenge problems that encourage students to learn by doing. By working through this book, students will gain a solid foundation in these methods and develop the skills they need to interpret patterns in the tree of life. Covers every major method of modern phylogenetic comparative analysis in RExplains the basics of R and discusses topics such as trait evolution, diversification, trait-dependent diversification, biogeography, and visualizationFeatures a wealth of exercises and challenge problemsServes as an invaluable resource for students and researchers, with applications in ecology, evolution, anthropology, disease transmission, conservation biology, and a host of other areasWritten by two of today’s leading developers of phylogenetic comparative methods

Historical Biogeography

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Publisher : Harvard University Press
ISBN 13 : 0674030044
Total Pages : 263 pages
Book Rating : 4.6/5 (74 download)

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Book Synopsis Historical Biogeography by : Jorge CRISCI

Download or read book Historical Biogeography written by Jorge CRISCI and published by Harvard University Press. This book was released on 2009-06-30 with total page 263 pages. Available in PDF, EPUB and Kindle. Book excerpt: Though biogeography may be simply defined--the study of the geographic distributions of organisms--the subject itself is extraordinarily complex, involving a range of scientific disciplines and a bewildering diversity of approaches. For convenience, biogeographers have recognized two research traditions: ecological biogeography and historical biogeography. This book makes sense of the profound revolution that historical biogeography has undergone in the last two decades, and of the resulting confusion over its foundations, basic concepts, methods, and relationships to other disciplines of comparative biology. Using case studies, the authors explain and illustrate the fundamentals and the most frequently used methods of this discipline. They show the reader how to tell when a historical biogeographic approach is called for, how to decide what kind of data to collect, how to choose the best method for the problem at hand, how to perform the necessary calculations, how to choose and apply a computer program, and how to interpret results.

Phylogeny, Ecology, and Behavior

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Publisher : University of Chicago Press
ISBN 13 : 9780226075716
Total Pages : 456 pages
Book Rating : 4.0/5 (757 download)

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Book Synopsis Phylogeny, Ecology, and Behavior by : Daniel R. Brooks

Download or read book Phylogeny, Ecology, and Behavior written by Daniel R. Brooks and published by University of Chicago Press. This book was released on 1991 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The merits of this work are many. A rigorous integration of phylogenetic hypotheses into studies of adaptation, adaptive radiation, and coevolution is absolutely necessary and can change dramatically our collective 'gestalt' about much in evolutionary biology. The authors advance and illustrate this thesis beautifully. The writing is often lucid, the examples are plentiful and diverse, and the juxtaposition of examples from different biological systems argues forcefully for the validity of the thesis. Many new insights are offered here, and the work is usually accessible to both the practiced phylogeneticist and the naive ecologist."—Joseph Travis, Florida State University "[Phylogeny, Ecology, and Behavior] presents its arguments forcefully and cogently, with ample . . .support. Brooks and McLennan conclude as they began, with the comment that evolution is a result, not a process, and that it is the result of an interaction of a variety of processes, environmental and historical. Evolutionary explanations must consider all these components, else they are incomplete. As Darwin's explanations of descent with modification integrated genealogical and ecological information, so must workers now incorporate historical and nonhistorical, and biological and nonbiological, processes in their evolutionary perspective."—Marvalee H. Wake, Bioscience "This book is well-written and thought-provoking, and should be read by those of us who do not routinely turn to phylogenetic analysis when investigating adaptation, evolutionary ecology and co-evolution."—Mark R. MacNair, Journal of Natural History

Evolutionary Patterns and Processes

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Publisher : Academic Press
ISBN 13 :
Total Pages : 346 pages
Book Rating : 4.:/5 (318 download)

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Book Synopsis Evolutionary Patterns and Processes by : D. R. Lees

Download or read book Evolutionary Patterns and Processes written by D. R. Lees and published by Academic Press. This book was released on 1993 with total page 346 pages. Available in PDF, EPUB and Kindle. Book excerpt: Evolution is the central theme of all biology. Researcarcch in the many branches of evolutionary study continues to flourish. This book, based on a symposium of the Linnean Society, discusses the diversity in currentevolutionary research. It approaches the subject ambitiously and from several angles, bringing ttogether eminent authors from a variety of disciplines paleontologists traditionally with a macroevolutionary bias, neontologists concentrating on microevolutionary processes, and those studying the very essence ofsses and those studying the very essence of evolution the process of speciation in living organisms. Evolutionary Patterns and Processes will appeal to a broad spectrum of professional biologistsworking in such fields as paleontology, population biology, and evolutionary genetics. Biologists will enjoy chapters by Stephen J. Gould, discovering in the much earlier work of Hugo de Vries parallels with his ideas on punctuational evolution; Guy Bush,considering why there are so many small animals; Peter Sheldon, examining detailed fossil trilobite sequences for evidence of microevolutionary processes and considering models of speciation; as well as others dealing with cytological, ecological, and behavioral processes leading to the evolution of new species. None