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Understanding The Tripartite Approach To Bayesian Divergence Time Estimation
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Book Synopsis Understanding the Tripartite Approach to Bayesian Divergence Time Estimation by : Rachel C. M. Warnock
Download or read book Understanding the Tripartite Approach to Bayesian Divergence Time Estimation written by Rachel C. M. Warnock and published by Cambridge University Press. This book was released on 2021-02-04 with total page 80 pages. Available in PDF, EPUB and Kindle. Book excerpt: Placing evolutionary events in the context of geological time is a fundamental goal in paleobiology and macroevolution. In this Element we describe the tripartite model used for Bayesian estimation of time calibrated phylogenetic trees. The model can be readily separated into its component models: the substitution model, the clock model and the tree model. We provide an overview of the most widely used models for each component and highlight the advantages of implementing the tripartite model within a Bayesian framework.
Book Synopsis Phylogenetic Comparative Methods: A User's Guide for Paleontologists by : Laura C. Soul
Download or read book Phylogenetic Comparative Methods: A User's Guide for Paleontologists written by Laura C. Soul and published by Cambridge University Press. This book was released on 2021-05-27 with total page 77 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent advances in statistical approaches called phylogenetic comparative methods (PCMs) have provided paleontologists with a powerful set of analytical tools for investigating evolutionary tempo and mode in fossil lineages. However, attempts to integrate PCMs with fossil data often present workers with practical challenges or unfamiliar literature. This Element presents guides to the theory behind and the application of PCMs with fossil taxa. Based on an empirical dataset of Paleozoic crinoids, example analyses are presented to illustrate common applications of PCMs to fossil data, including investigating patterns of correlated trait evolution and macroevolutionary models of morphological change. The authors emphasize the importance of accounting for sources of uncertainty and discuss how to evaluate model fit and adequacy. Finally, the authors discuss several promising methods for modeling heterogeneous evolutionary dynamics with fossil phylogenies. Integrating phylogeny-based approaches with the fossil record provides a rigorous, quantitative perspective on understanding key patterns in the history of life.
Book Synopsis Testing Character Evolution Models in Phylogenetic Paleobiology by : April Wright
Download or read book Testing Character Evolution Models in Phylogenetic Paleobiology written by April Wright and published by Cambridge University Press. This book was released on 2021-08-26 with total page 80 pages. Available in PDF, EPUB and Kindle. Book excerpt: Macroevolutionary inference has historically been treated as a two-step process, involving the inference of a tree, and then inference of a macroevolutionary model using that tree. Newer models blend the two steps. These methods make more complete use of fossils than the previous generation of Bayesian phylogenetic models. They also involve many more parameters than prior models, including parameters about which empiricists may have little intuition. In this Element, we set forth a framework for fitting complex, hierarchical models. The authors ultimately fit and use a joint tree and diversification model to estimate a dated phylogeny of the Cincta (Echinodermata), a morphologically distinct group of Cambrian echinoderms that lack the fivefold radial symmetry characteristic of extant members of the phylum. Although the phylogeny of cinctans remains poorly supported in places, this Element shows how models of character change and diversification contribute to understanding patterns of phylogenetic relatedness and testing macroevolutionary hypotheses.
Book Synopsis Disarticulation and Preservation of Fossil Echinoderms: Recognition of Ecological-Time Information in the Echinoderm Fossil Record by : William I. Ausich
Download or read book Disarticulation and Preservation of Fossil Echinoderms: Recognition of Ecological-Time Information in the Echinoderm Fossil Record written by William I. Ausich and published by Cambridge University Press. This book was released on 2021-02-11 with total page 79 pages. Available in PDF, EPUB and Kindle. Book excerpt: The history of life on earth is largely reconstructed from time-averaged accumulations of fossils. A glimpse at ecologic-time attributes and processes is relatively rare. However, the time-sensitive and predictability of echinoderm disarticulation makes them model organisms to determine post-mortem transportation and allows recognition of ecological-time data within paleocommunity accumulations. Unlike many other fossil groups, this has allowed research on many aspects of echinoderms and their paleocommunities, such as the distribution of soft tissues, assessment of the amount of fossil transportation prior to burial, determination of intraspecific variation, paleocommunity composition, estimation of relative abundance of taxa in paleocommunities, determination of attributes of niche differentiation, etc. Crinoids and echinoids have received the most amount of taphonomic research, and the patterns present in these two groups can be used to develop a more thorough understanding of all echinoderm clades.
Book Synopsis Expanded Sampling Across Ontogeny in Deltasuchus motherali (Neosuchia, Crocodyliformes) by : Stephanie K. Drumheller
Download or read book Expanded Sampling Across Ontogeny in Deltasuchus motherali (Neosuchia, Crocodyliformes) written by Stephanie K. Drumheller and published by Cambridge University Press. This book was released on 2021-06-03 with total page 75 pages. Available in PDF, EPUB and Kindle. Book excerpt: New material attributable to Deltasuchus motherali, a neosuchian from the Cenomanian of Texas, provides sampling across much of the ontogeny of this species. Detailed descriptions provide information about the paleobiology of this species, particularly with regards to how growth and development affected diet. Overall snout shape became progressively wider and more robust with age, suggesting that dietary shifts from juvenile to adult were not only a matter of size change, but of functional performance as well. These newly described elements provide additional characters upon which to base more robust phylogenetic analyses. The authors provide a revised diagnosis of this species, describing the new material and discussing incidents of apparent ontogenetic variation across the sampled population. The results of the ensuing phylogenetic analyses both situate Deltasuchus within an endemic clade of Appalachian crocodyliforms, separate and diagnosable from goniopholidids and pholidosaurs, herein referred to as Paluxysuchidae. This title is also available as Open Access on Cambridge Core.
Book Synopsis Elements of Paleontology: Crinoid Feeding Strategies: New Insights from Subsea Video and Time-Lapse by : Meyer, David L.
Download or read book Elements of Paleontology: Crinoid Feeding Strategies: New Insights from Subsea Video and Time-Lapse written by Meyer, David L. and published by . This book was released on with total page 34 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Follow the Fossils by : Samantha B. Ocon
Download or read book Follow the Fossils written by Samantha B. Ocon and published by Cambridge University Press. This book was released on 2021-12-09 with total page 51 pages. Available in PDF, EPUB and Kindle. Book excerpt: The ability for people to connect, learn, and communicate about science has been enhanced through the Internet, specifically through social media platforms. Facebook and Twitter are well-studied, while Instagram is understudied. This Element provides insight into using Instagram as a science education platform by pioneering a set of calculated metrics, using a paleontology-focused account as a case study. Framed by the theory of affinity spaces, the authors conducted year-long analyses of 455 posts and 139 stories that were created as part of an informal science learning project. They found that team activity updates and posts outside of their other categories perform better than their defined categories. For Instagram stories, the data show that fewer slides per story hold viewers' attention longer, and stories using the poll tool garnered the most interaction. This Element provides a baseline to assess the success of Instagram content for science communicators and natural science institutions.
Book Synopsis The Taphonomy of Echinoids by : James H. Nebelsick
Download or read book The Taphonomy of Echinoids written by James H. Nebelsick and published by Cambridge University Press. This book was released on 2021-10-21 with total page 80 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of echinoid evolution, diversity, and ecology has always suffered from the fact that they are represented by taxa showing widely differing architectural designs of their multi-plated skeletons, inhabiting a large range of marine paleoenvironments, which result in highly varying taphonomic biases dictating their presence and recognition. This Element addresses the taphonomy of echinoids and includes: a general introduction to the morphological features of echinoids that play a role in their preservation; a review of processes which play an important role in the differential preservation of both regular and irregular echinoids including predation and transport; a summary of taphonomic pathways included in actualistic studies for recent sea urchins and then reconstructed for fossil taxa; and finally, a case study of the variation of echinoid taphonomy across a shelf gradient using the rich Miocene echinoid fauna of Sardinia.
Book Synopsis Virtual Paleontology by : Jennifer E. Bauer
Download or read book Virtual Paleontology written by Jennifer E. Bauer and published by Cambridge University Press. This book was released on 2021-11-11 with total page 67 pages. Available in PDF, EPUB and Kindle. Book excerpt: Imaging and visualizing fossils in three dimensions with tomography is a powerful approach in paleontology. Here, the authors introduce select destructive and non-destructive tomographic techniques that are routinely applied to fossils and review how this work has improved our understanding of the anatomy, function, taphonomy, and phylogeny of fossil echinoderms. Building on this, this Element discusses how new imaging and computational methods have great promise for addressing long-standing paleobiological questions. Future efforts to improve the accessibility of the data underlying this work will be key for realizing the potential of this virtual world of paleontology.
Book Synopsis Elements of Paleontology: The Stratigraphic Paleobiology of Nonmarine Systems by : Holland, Steven
Download or read book Elements of Paleontology: The Stratigraphic Paleobiology of Nonmarine Systems written by Holland, Steven and published by Cambridge University Press. This book was released on 2021-04-02 with total page 137 pages. Available in PDF, EPUB and Kindle. Book excerpt: The principles of stratigraphic paleobiology can be readily applied to the nonmarine fossil record. Consistent spatial and temporal patterns of accommodation and sedimentation in sedimentary basins are an important control on stratigraphic architecture. Temperature and precipitation covary with elevation, causing significant variation in community composition, and changes in base level cause elevation to undergo predictable changes. These principles lead to eight sets of hypotheses about the nonmarine fossil record. Three relate to long-term and cyclical patterns in the preservation of major fossil groups and their taphonomy, as well as the occurrence of fossil concentrations. The remaining hypotheses relate to the widespread occurrence of elevation-correlated gradients in community composition, long-term and cyclical trends in these communities, and the stratigraphic position of abrupt changes in community composition. Testing of these hypotheses makes the stratigraphic paleobiology of nonmarine systems a promising area of investigation.
Book Synopsis Computational Fluid Dynamics and its Applications in Echinoderm Palaeobiology by : Imran A. Rahman
Download or read book Computational Fluid Dynamics and its Applications in Echinoderm Palaeobiology written by Imran A. Rahman and published by Cambridge University Press. This book was released on 2020-11-19 with total page 46 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational fluid dynamics (CFD), which involves using computers to simulate fluid flow, is emerging as a powerful approach for elucidating the palaeobiology of ancient organisms. Here, Imran A. Rahman describes its applications for studying fossil echinoderms. When properly configured, CFD simulations can be used to test functional hypotheses in extinct species, informing on aspects such as feeding and stability. They also show great promise for addressing ecological questions related to the interaction between organisms and their environment. CFD has the potential to become an important tool in echinoderm palaeobiology over the coming years.
Book Synopsis Echinoderm Morphological Disparity: Methods, Patterns, and Possibilities by : Bradley Deline
Download or read book Echinoderm Morphological Disparity: Methods, Patterns, and Possibilities written by Bradley Deline and published by Cambridge University Press. This book was released on 2021-02-11 with total page 79 pages. Available in PDF, EPUB and Kindle. Book excerpt: The quantification of morphology through time is a vital tool in elucidating macroevolutionary patterns. Studies of disparity require intense effort but can provide insights beyond those gained using other methodologies. Over the last several decades, studies of disparity have proliferated, often using echinoderms as a model organism. Echinoderms have been used to study the methodology of disparity analyses and potential biases as well as documenting the morphological patterns observed in clades through time. Combining morphological studies with phylogenetic analyses or other disparate data sets allows for the testing of detailed and far-reaching evolutionary hypotheses.
Book Synopsis A Bayesian Method for Divergence Time Estimation from Mitochondrial and Homologous Numt Sequences with Application to African Gorilla Phylogeography by : Joungyoun Kim
Download or read book A Bayesian Method for Divergence Time Estimation from Mitochondrial and Homologous Numt Sequences with Application to African Gorilla Phylogeography written by Joungyoun Kim and published by . This book was released on 2008 with total page 182 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Bayesian Phylogenetics by : Ming-Hui Chen
Download or read book Bayesian Phylogenetics written by Ming-Hui Chen and published by CRC Press. This book was released on 2014-05-27 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: Offering a rich diversity of models, Bayesian phylogenetics allows evolutionary biologists, systematists, ecologists, and epidemiologists to obtain answers to very detailed phylogenetic questions. Suitable for graduate-level researchers in statistics and biology, Bayesian Phylogenetics: Methods, Algorithms, and Applications presents a snapshot of c
Download or read book Proceedings written by and published by . This book was released on 2009 with total page 630 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Current Index to Statistics, Applications, Methods and Theory by :
Download or read book Current Index to Statistics, Applications, Methods and Theory written by and published by . This book was released on 1999 with total page 948 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Current Index to Statistics (CIS) is a bibliographic index of publications in statistics, probability, and related fields.
Book Synopsis Bioinformatics and Molecular Evolution by : Paul G. Higgs
Download or read book Bioinformatics and Molecular Evolution written by Paul G. Higgs and published by John Wiley & Sons. This book was released on 2013-04-30 with total page 532 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the current era of complete genome sequencing, Bioinformatics and Molecular Evolution provides an up-to-date and comprehensive introduction to bioinformatics in the context of evolutionary biology. This accessible text: provides a thorough examination of sequence analysis, biological databases, pattern recognition, and applications to genomics, microarrays, and proteomics emphasizes the theoretical and statistical methods used in bioinformatics programs in a way that is accessible to biological science students places bioinformatics in the context of evolutionary biology, including population genetics, molecular evolution, molecular phylogenetics, and their applications features end-of-chapter problems and self-tests to help students synthesize the materials and apply their understanding is accompanied by a dedicated website - www.blackwellpublishing.com/higgs - containing downloadable sequences, links to web resources, answers to self-test questions, and all artwork in downloadable format (artwork also available to instructors on CD-ROM). This important textbook will equip readers with a thorough understanding of the quantitative methods used in the analysis of molecular evolution, and will be essential reading for advanced undergraduates, graduates, and researchers in molecular biology, genetics, genomics, computational biology, and bioinformatics courses.
