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Author : Paul E. Dunne
Publisher :
ISBN 13 :
Total Pages : 526 pages
Book Rating : 4.3/5 (91 download)
Download or read book The Complexity of Boolean Networks written by Paul E. Dunne and published by . This book was released on 1988 with total page 526 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Ilya Shmulevich
Publisher : SIAM
ISBN 13 : 0898716926
Total Pages : 276 pages
Book Rating : 4.8/5 (987 download)
Download or read book Probabilistic Boolean Networks written by Ilya Shmulevich and published by SIAM. This book was released on 2010-01-21 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Author : Ingo Wegener
Publisher :
ISBN 13 :
Total Pages : 502 pages
Book Rating : 4.F/5 ( download)
Download or read book The Complexity of Boolean Functions written by Ingo Wegener and published by . This book was released on 1987 with total page 502 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Ilya Shmulevich
Publisher : SIAM
ISBN 13 : 0898717639
Total Pages : 277 pages
Book Rating : 4.8/5 (987 download)
Download or read book Probabilistic Boolean Networks written by Ilya Shmulevich and published by SIAM. This book was released on 2010-01-01 with total page 277 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first comprehensive treatment of probabilistic Boolean networks (PBNs), an important model class for studying genetic regulatory networks. This book covers basic model properties, including the relationships between network structure and dynamics, steady-state analysis, and relationships to other model classes." "Researchers in mathematics, computer science, and engineering are exposed to important applications in systems biology and presented with ample opportunities for developing new approaches and methods. The book is also appropriate for advanced undergraduates, graduate students, and scientists working in the fields of computational biology, genomic signal processing, control and systems theory, and computer science.
Author : Tatsuya Akutsu
Publisher : World Scientific
ISBN 13 : 9813233443
Total Pages : 227 pages
Book Rating : 4.8/5 (132 download)
Download or read book Algorithms For Analysis, Inference, And Control Of Boolean Networks written by Tatsuya Akutsu and published by World Scientific. This book was released on 2018-02-14 with total page 227 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Boolean network (BN) is a mathematical model of genetic networks and other biological networks. Although extensive studies have been done on BNs from a viewpoint of complex systems, not so many studies have been undertaken from a computational viewpoint. This book presents rigorous algorithmic results on important computational problems on BNs, which include inference of a BN, detection of singleton and periodic attractors in a BN, and control of a BN. This book also presents algorithmic results on fundamental computational problems on probabilistic Boolean networks and a Boolean model of metabolic networks. Although most contents of the book are based on the work by the author and collaborators, other important computational results and techniques are also reviewed or explained.
Author : Gianfranco Bilardi
Publisher :
ISBN 13 :
Total Pages : 15 pages
Book Rating : 4.:/5 (163 download)
Download or read book Size-time Complexity of Boolean Networks for Prefix Computations written by Gianfranco Bilardi and published by . This book was released on 1987 with total page 15 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Alberto Fuente
Publisher : Springer Science & Business Media
ISBN 13 : 3642451616
Total Pages : 135 pages
Book Rating : 4.6/5 (424 download)
Download or read book Gene Network Inference written by Alberto Fuente and published by Springer Science & Business Media. This book was released on 2014-01-03 with total page 135 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents recent methods for Systems Genetics (SG) data analysis, applying them to a suite of simulated SG benchmark datasets. Each of the chapter authors received the same datasets to evaluate the performance of their method to better understand which algorithms are most useful for obtaining reliable models from SG datasets. The knowledge gained from this benchmarking study will ultimately allow these algorithms to be used with confidence for SG studies e.g. of complex human diseases or food crop improvement. The book is primarily intended for researchers with a background in the life sciences, not for computer scientists or statisticians.
Author : David P. Rosin
Publisher : Springer
ISBN 13 : 3319135783
Total Pages : 208 pages
Book Rating : 4.3/5 (191 download)
Download or read book Dynamics of Complex Autonomous Boolean Networks written by David P. Rosin and published by Springer. This book was released on 2014-12-31 with total page 208 pages. Available in PDF, EPUB and Kindle. Book excerpt: This thesis focuses on the dynamics of autonomous Boolean networks, on the basis of Boolean logic functions in continuous time without external clocking. These networks are realized with integrated circuits on an electronic chip as a field programmable gate array (FPGA) with roughly 100,000 logic gates, offering an extremely flexible model system. It allows fast and cheap design cycles and large networks with arbitrary topologies and coupling delays. The author presents pioneering results on theoretical modeling, experimental realization, and selected applications. In this regard, three classes of novel dynamic behavior are investigated: (i) Chaotic Boolean networks are proposed as high-speed physical random number generators with high bit rates. (ii) Networks of periodic Boolean oscillators are home to long-living transient chimera states, i.e., novel patterns of coexisting domains of spatially coherent (synchronized) and incoherent (desynchronized) dynamics. (iii) Excitable networks exhibit cluster synchronization and can be used as fast artificial Boolean neurons whose spiking patterns can be controlled. This work presents the first experimental platform for large complex networks, which will facilitate exciting future developments.
Author : Ingo Wegener
Publisher :
ISBN 13 :
Total Pages : 5 pages
Book Rating : 4.:/5 (747 download)
Download or read book An improved complexity hierarchy on the Boolean network complexity and formula size of Boolean functions written by Ingo Wegener and published by . This book was released on 1984 with total page 5 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Katsuhisa Horimoto
Publisher : Springer Science & Business Media
ISBN 13 : 3540851003
Total Pages : 256 pages
Book Rating : 4.5/5 (48 download)
Download or read book Algebraic Biology written by Katsuhisa Horimoto and published by Springer Science & Business Media. This book was released on 2008-07-18 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.
Author : Stefano Boccaletti
Publisher : World Scientific
ISBN 13 : 9812838791
Total Pages : 465 pages
Book Rating : 4.8/5 (128 download)
Download or read book Handbook on Biological Networks written by Stefano Boccaletti and published by World Scientific. This book was released on 2010 with total page 465 pages. Available in PDF, EPUB and Kindle. Book excerpt: Networked systems are all around us. The accumulated evidence of systems as complex as a cell cannot be fully understood by studying only their isolated constituents, giving rise to a new area of interest in research ? the study of complex networks. In a broad sense, biological networks have been one of the most studied networks, and the field has benefited from many important contributions. By understanding and modeling the structure of a biological network, a better perception of its dynamical and functional behavior is to be expected. This unique book compiles the most relevant results and novel insights provided by network theory in the biological sciences, ranging from the structure and dynamics of the brain to cellular and protein networks and to population-level biology.
Author : Samuli Niiranen
Publisher : Springer Science & Business Media
ISBN 13 : 3642196217
Total Pages : 234 pages
Book Rating : 4.6/5 (421 download)
Download or read book Information Processing and Biological Systems written by Samuli Niiranen and published by Springer Science & Business Media. This book was released on 2011-03-10 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt: Living beings require constant information processing for survival. In cells, information is being processed and propagated at various levels, from the gene regulatory network to chemical pathways, to the interaction with the environment. How this is achieved and how information is coded is still poorly understood. For example, what a cell interprets as information in the temporal level of an mRNA and what is interpreted as noise remains an open question. Recently, information theoretical methods and other tools, developed in the context of engineering and natural sciences, have been applied to study diverse biological processes. This book covers the latest findings on how information is processed in various biological processes, ranging from information processing and propagation in gene regulatory networks to information processing in natural language. An overview is presented of the state-of-the-art in information processing in biological systems and the opinion of current leaders in this research field on future research directions.
Author : Daizhan Cheng
Publisher : Springer Science & Business Media
ISBN 13 : 0857290975
Total Pages : 474 pages
Book Rating : 4.8/5 (572 download)
Download or read book Analysis and Control of Boolean Networks written by Daizhan Cheng and published by Springer Science & Business Media. This book was released on 2010-11-23 with total page 474 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology – fixed points, cycles, transient times and basins of attractors – can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.
Author : Yves Crama
Publisher : Cambridge University Press
ISBN 13 : 1139498630
Total Pages : 711 pages
Book Rating : 4.1/5 (394 download)
Download or read book Boolean Functions written by Yves Crama and published by Cambridge University Press. This book was released on 2011-05-16 with total page 711 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written by prominent experts in the field, this monograph provides the first comprehensive, unified presentation of the structural, algorithmic and applied aspects of the theory of Boolean functions. The book focuses on algebraic representations of Boolean functions, especially disjunctive and conjunctive normal form representations. This framework looks at the fundamental elements of the theory (Boolean equations and satisfiability problems, prime implicants and associated short representations, dualization), an in-depth study of special classes of Boolean functions (quadratic, Horn, shellable, regular, threshold, read-once functions and their characterization by functional equations) and two fruitful generalizations of the concept of Boolean functions (partially defined functions and pseudo-Boolean functions). Several topics are presented here in book form for the first time. Because of the depth and breadth and its emphasis on algorithms and applications, this monograph will have special appeal for researchers and graduate students in discrete mathematics, operations research, computer science, engineering and economics.
Author : Yves Crama
Publisher : Cambridge University Press
ISBN 13 : 0521847524
Total Pages : 781 pages
Book Rating : 4.5/5 (218 download)
Download or read book Boolean Models and Methods in Mathematics, Computer Science, and Engineering written by Yves Crama and published by Cambridge University Press. This book was released on 2010-06-28 with total page 781 pages. Available in PDF, EPUB and Kindle. Book excerpt: A collection of papers written by prominent experts that examine a variety of advanced topics related to Boolean functions and expressions.
Author : Cornell University. Department of Computer Science
Publisher :
ISBN 13 :
Total Pages : 15 pages
Book Rating : 4.:/5 (271 download)
Download or read book Size-time Complexity of Boolean Networks for Prefix Computation written by Cornell University. Department of Computer Science and published by . This book was released on 1987 with total page 15 pages. Available in PDF, EPUB and Kindle. Book excerpt: The prefix problem consists of computing all the products $x_{0}x_{1}\ldots x_{j} (j=0,\ldots,N-1)$, given a sequence $X = (x_{0},x_{1},\ldots,x_{N-1})$ of elements in a semigroup. In this paper we completely characterize the size-time complexity of computing prefixes with boolean networks, which are synchronized interconnections of boolean gates and one-bit storage devices. This complexity crucially depends upon a property of the underlying semigroup, which we call cycle-freedom (no cycle of length greater than one in the Cayley graph of the semigroup). Denoting by $S$ and $T$ size and computation time, respectively, we have $S = \Theta((N/T) \log(N/T))$, for non-cycle-free semigroups, and $S = \Theta((N/T)$, for cycle-free semigroups. In both cases, $T \in [\Omega(\logN),O(N)]$.
Author : Dai-Zhan Cheng
Publisher : World Scientific
ISBN 13 : 9814374695
Total Pages : 610 pages
Book Rating : 4.8/5 (143 download)
Download or read book An Introduction to Semi-tensor Product of Matrices and Its Applications written by Dai-Zhan Cheng and published by World Scientific. This book was released on 2012 with total page 610 pages. Available in PDF, EPUB and Kindle. Book excerpt: A generalization of Conventional Matrix Product (CMP), called the Semi-Tensor Product (STP), is proposed. It extends the CMP to two arbitrary matrices and maintains all fundamental properties of CMP. In addition, it has a pseudo-commutative property, which makes it more superior to CMP. The STP was proposed by the authors to deal with higher-dimensional data as well as multilinear mappings. After over a decade of development, STP has been proven to be a powerful tool in dealing with nonlinear and logical calculations.This book is a comprehensive introduction to the theory of STP and its various applications, including logical function, fuzzy control, Boolean networks, analysis and control of nonlinear systems, amongst others.
