The Burrows Wheeler Transform

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The Burrows-Wheeler Transform:

Author : Donald Adjeroh
Publisher : Springer Science & Business Media
ISBN 13 : 038778909X
Total Pages : 353 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis The Burrows-Wheeler Transform: by : Donald Adjeroh

Download or read book The Burrows-Wheeler Transform: written by Donald Adjeroh and published by Springer Science & Business Media. This book was released on 2008-06-17 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Burrows-Wheeler Transform is one of the best lossless compression me- ods available. It is an intriguing — even puzzling — approach to squeezing redundancy out of data, it has an interesting history, and it has applications well beyond its original purpose as a compression method. It is a relatively late addition to the compression canon, and hence our motivation to write this book, looking at the method in detail, bringing together the threads that led to its discovery and development, and speculating on what future ideas might grow out of it. The book is aimed at a wide audience, ranging from those interested in learning a little more than the short descriptions of the BWT given in st- dard texts, through to those whose research is building on what we know about compression and pattern matching. The ?rst few chapters are a careful description suitable for readers with an elementary computer science ba- ground (and these chapters have been used in undergraduate courses), but later chapters collect a wide range of detailed developments, some of which are built on advanced concepts from a range of computer science topics (for example, some of the advanced material has been used in a graduate c- puter science course in string algorithms). Some of the later explanations require some mathematical sophistication, but most should be accessible to those with a broad background in computer science.

Genome-Scale Algorithm Design

Author : Veli Mäkinen
Publisher : Cambridge University Press
ISBN 13 : 1009341219
Total Pages : 470 pages
Book Rating : 4.0/5 (93 download)

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Book Synopsis Genome-Scale Algorithm Design by : Veli Mäkinen

Download or read book Genome-Scale Algorithm Design written by Veli Mäkinen and published by Cambridge University Press. This book was released on 2023-10-12 with total page 470 pages. Available in PDF, EPUB and Kindle. Book excerpt: Guided by standard bioscience workflows in high-throughput sequencing analysis, this book for graduate students, researchers, and professionals in bioinformatics and computer science offers a unified presentation of genome-scale algorithms. This new edition covers the use of minimizers and other advanced data structures in pangenomics approaches.

Understanding Compression

Author : Colt McAnlis
Publisher : "O'Reilly Media, Inc."
ISBN 13 : 1491961503
Total Pages : 241 pages
Book Rating : 4.4/5 (919 download)

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Book Synopsis Understanding Compression by : Colt McAnlis

Download or read book Understanding Compression written by Colt McAnlis and published by "O'Reilly Media, Inc.". This book was released on 2016-07-13 with total page 241 pages. Available in PDF, EPUB and Kindle. Book excerpt: If you want to attract and retain users in the booming mobile services market, you need a quick-loading app that won’t churn through their data plans. The key is to compress multimedia and other data into smaller files, but finding the right method is tricky. This witty book helps you understand how data compression algorithms work—in theory and practice—so you can choose the best solution among all the available compression tools. With tables, diagrams, games, and as little math as possible, authors Colt McAnlis and Aleks Haecky neatly explain the fundamentals. Learn how compressed files are better, cheaper, and faster to distribute and consume, and how they’ll give you a competitive edge. Learn why compression has become crucial as data production continues to skyrocket Know your data, circumstances, and algorithm options when choosing compression tools Explore variable-length codes, statistical compression, arithmetic numerical coding, dictionary encodings, and context modeling Examine tradeoffs between file size and quality when choosing image compressors Learn ways to compress client- and server-generated data objects Meet the inventors and visionaries who created data compression algorithms

Bioinformatics Algorithms

Author : Enno Ohlebusch
Publisher :
ISBN 13 : 9783000413162
Total Pages : 604 pages
Book Rating : 4.4/5 (131 download)

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Book Synopsis Bioinformatics Algorithms by : Enno Ohlebusch

Download or read book Bioinformatics Algorithms written by Enno Ohlebusch and published by . This book was released on 2013 with total page 604 pages. Available in PDF, EPUB and Kindle. Book excerpt:

A Concise Introduction to Data Compression

Author : David Salomon
Publisher : Springer Science & Business Media
ISBN 13 : 1848000723
Total Pages : 318 pages
Book Rating : 4.8/5 (48 download)

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Book Synopsis A Concise Introduction to Data Compression by : David Salomon

Download or read book A Concise Introduction to Data Compression written by David Salomon and published by Springer Science & Business Media. This book was released on 2007-12-18 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: This clearly written book offers readers a succinct foundation to the most important topics in the field of data compression. Part I presents the basic approaches to data compression and describes a few popular techniques and methods that are commonly used to compress data. The reader will discover essential concepts. Part II concentrates on advanced techniques, such as arithmetic coding, orthogonal transforms, subband transforms and Burrows-Wheeler transform. This book is the perfect reference for advanced undergraduates in computer science and requires a minimum of mathematics. An author-maintained website provides errata and auxiliary material.

Introduction to Data Compression

Author : Khalid Sayood
Publisher : Elsevier
ISBN 13 : 012620862X
Total Pages : 704 pages
Book Rating : 4.1/5 (262 download)

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Book Synopsis Introduction to Data Compression by : Khalid Sayood

Download or read book Introduction to Data Compression written by Khalid Sayood and published by Elsevier. This book was released on 2006 with total page 704 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Khalid Sayood provides an extensive introduction to the theory underlying today's compression techniques with detailed instruction for their applications using several examples to explain the concepts. Encompassing the entire field of data compression Introduction to Data Compression, includes lossless and lossy compression, Huffman coding, arithmetic coding, dictionary techniques, context based compression, scalar and vector quantization. Khalid Sayood provides a working knowledge of data compression, giving the reader the tools to develop a complete and concise compression package upon completion of his book."--BOOK JACKET.

Algorithm Theory - SWAT 2004

Author : Torben Hagerup
Publisher : Springer Science & Business Media
ISBN 13 : 3540223398
Total Pages : 517 pages
Book Rating : 4.5/5 (42 download)

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Book Synopsis Algorithm Theory - SWAT 2004 by : Torben Hagerup

Download or read book Algorithm Theory - SWAT 2004 written by Torben Hagerup and published by Springer Science & Business Media. This book was released on 2004-06-22 with total page 517 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 9th Scandinavian Workshop on Algorithm Theory, SWAT 2004, held in Humlebaek, Denmark in July 2004. The 40 revised full papers presented together with an invited paper and the abstract of an invited talk were carefully reviewed and selected from 121 submissions. The papers span the entire range of theoretical algorithmics and applications in various fields including graph algorithms, computational geometry, scheduling, approximation algorithms, network algorithms, data storage and manipulation, bioinformatics, combinatorics, sorting, searching, online algorithms, optimization, etc.

Text Compression

Author : Timothy C. Bell
Publisher : Englewood Cliffs, N.J. : Prentice Hall
ISBN 13 :
Total Pages : 344 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Text Compression by : Timothy C. Bell

Download or read book Text Compression written by Timothy C. Bell and published by Englewood Cliffs, N.J. : Prentice Hall. This book was released on 1990 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: M->CREATED

String Processing and Information Retrieval

Author : Alberto Apostolico
Publisher : Springer Science & Business Media
ISBN 13 : 3540232109
Total Pages : 345 pages
Book Rating : 4.5/5 (42 download)

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Book Synopsis String Processing and Information Retrieval by : Alberto Apostolico

Download or read book String Processing and Information Retrieval written by Alberto Apostolico and published by Springer Science & Business Media. This book was released on 2004-09-23 with total page 345 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 11th International Conference on String Processing and Information Retrieval, SPIRE 2004, held in Padova, Italy, in October 2004. The 28 revised full papers and 16 revised short papers presented were carefully reviewed and selected from 123 submissions. The papers address current issues in string pattern searching and matching, string discovery, data compression, data mining, text mining, machine learning, information retrieval, digital libraries, and applications in various fields, such as bioinformatics, speech and natural language processing, Web links and communities, and multilingual data.

Introduction to Information Theory and Data Compression, Second Edition

Author : D.C. Hankerson
Publisher : CRC Press
ISBN 13 : 9781584883135
Total Pages : 394 pages
Book Rating : 4.8/5 (831 download)

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Book Synopsis Introduction to Information Theory and Data Compression, Second Edition by : D.C. Hankerson

Download or read book Introduction to Information Theory and Data Compression, Second Edition written by D.C. Hankerson and published by CRC Press. This book was released on 2003-02-26 with total page 394 pages. Available in PDF, EPUB and Kindle. Book excerpt: An effective blend of carefully explained theory and practical applications, this text imparts the fundamentals of both information theory and data compression. Although the two topics are related, this unique text allows either topic to be presented independently, and it was specifically designed so that the data compression section requires no prior knowledge of information theory. The treatment of information theory, while theoretical and abstract, is quite elementary, making this text less daunting than many others. After presenting the fundamental definitions and results of the theory, the authors then apply the theory to memoryless, discrete channels with zeroth-order, one-state sources. The chapters on data compression acquaint students with a myriad of lossless compression methods and then introduce two lossy compression methods. Students emerge from this study competent in a wide range of techniques. The authors' presentation is highly practical but includes some important proofs, either in the text or in the exercises, so instructors can, if they choose, place more emphasis on the mathematics. Introduction to Information Theory and Data Compression, Second Edition is ideally suited for an upper-level or graduate course for students in mathematics, engineering, and computer science. Features: Expanded discussion of the historical and theoretical basis of information theory that builds a firm, intuitive grasp of the subject Reorganization of theoretical results along with new exercises, ranging from the routine to the more difficult, that reinforce students' ability to apply the definitions and results in specific situations. Simplified treatment of the algorithm(s) of Gallager and Knuth Discussion of the information rate of a code and the trade-off between error correction and information rate Treatment of probabilistic finite state source automata, including basic results, examples, references, and exercises Octave and MATLAB image compression codes included in an appendix for use with the exercises and projects involving transform methods Supplementary materials, including software, available for download from the authors' Web site at www.dms.auburn.edu/compression

Pearls of Functional Algorithm Design

Author : Richard Bird
Publisher : Cambridge University Press
ISBN 13 : 1139490605
Total Pages : pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Pearls of Functional Algorithm Design by : Richard Bird

Download or read book Pearls of Functional Algorithm Design written by Richard Bird and published by Cambridge University Press. This book was released on 2010-09-16 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Richard Bird takes a radical approach to algorithm design, namely, design by calculation. These 30 short chapters each deal with a particular programming problem drawn from sources as diverse as games and puzzles, intriguing combinatorial tasks, and more familiar areas such as data compression and string matching. Each pearl starts with the statement of the problem expressed using the functional programming language Haskell, a powerful yet succinct language for capturing algorithmic ideas clearly and simply. The novel aspect of the book is that each solution is calculated from an initial formulation of the problem in Haskell by appealing to the laws of functional programming. Pearls of Functional Algorithm Design will appeal to the aspiring functional programmer, students and teachers interested in the principles of algorithm design, and anyone seeking to master the techniques of reasoning about programs in an equational style.

Data Compression

Author : David Salomon
Publisher : Springer Science & Business Media
ISBN 13 : 0387218327
Total Pages : 912 pages
Book Rating : 4.3/5 (872 download)

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Book Synopsis Data Compression by : David Salomon

Download or read book Data Compression written by David Salomon and published by Springer Science & Business Media. This book was released on 2006-05-09 with total page 912 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive reference for the many different types and methods of compression, including a detailed and helpful taxonomy, an analysis of the most common methods, and discussions on their use and comparative benefits. The presentation is organized into the main branches of the field: run length encoding, statistical methods, dictionary-based methods, image compression, audio compression, and video compression. Detailed descriptions and explanations of the most well- known and frequently used methods are covered in a self-contained fashion, with an accessible style and technical level for specialists and nonspecialists. In short, the book provides an invaluable reference and guide for all computer scientists, computer engineers, electrical engineers, signal/image processing engineers and other scientists needing a comprehensive compilation for a broad range of compression methods.

Clever Algorithms

Author : Jason Brownlee
Publisher : Jason Brownlee
ISBN 13 : 1446785068
Total Pages : 437 pages
Book Rating : 4.4/5 (467 download)

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Book Synopsis Clever Algorithms by : Jason Brownlee

Download or read book Clever Algorithms written by Jason Brownlee and published by Jason Brownlee. This book was released on 2011 with total page 437 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a handbook of algorithmic recipes from the fields of Metaheuristics, Biologically Inspired Computation and Computational Intelligence that have been described in a complete, consistent, and centralized manner. These standardized descriptions were carefully designed to be accessible, usable, and understandable. Most of the algorithms described in this book were originally inspired by biological and natural systems, such as the adaptive capabilities of genetic evolution and the acquired immune system, and the foraging behaviors of birds, bees, ants and bacteria. An encyclopedic algorithm reference, this book is intended for research scientists, engineers, students, and interested amateurs. Each algorithm description provides a working code example in the Ruby Programming Language.

Fundamental Data Compression

Author : Ida Mengyi Pu
Publisher : Butterworth-Heinemann
ISBN 13 : 0080530265
Total Pages : 269 pages
Book Rating : 4.0/5 (85 download)

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Book Synopsis Fundamental Data Compression by : Ida Mengyi Pu

Download or read book Fundamental Data Compression written by Ida Mengyi Pu and published by Butterworth-Heinemann. This book was released on 2005-11-03 with total page 269 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fundamental Data Compression provides all the information students need to be able to use this essential technology in their future careers. A huge, active research field, and a part of many people's everyday lives, compression technology is an essential part of today's Computer Science and Electronic Engineering courses. With the help of this book, students can gain a thorough understanding of the underlying theory and algorithms, as well as specific techniques used in a range of scenarios, including the application of compression techniques to text, still images, video and audio. Practical exercises, projects and exam questions reinforce learning, along with suggestions for further reading.* Dedicated data compression textbook for use on undergraduate courses* Provides essential knowledge for today's web/multimedia applications* Accessible, well structured text backed up by extensive exercises and sample exam questions

Bioinformatics Algorithms

Author : Phillip Compeau
Publisher :
ISBN 13 : 9780990374633
Total Pages : pages
Book Rating : 4.3/5 (746 download)

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Book Synopsis Bioinformatics Algorithms by : Phillip Compeau

Download or read book Bioinformatics Algorithms written by Phillip Compeau and published by . This book was released on 1986-06 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics Algorithms: an Active Learning Approach is one of the first textbooks to emerge from the recent Massive Online Open Course (MOOC) revolution. A light-hearted and analogy-filled companion to the authors' acclaimed online course (http://coursera.org/course/bioinformatics), this book presents students with a dynamic approach to learning bioinformatics. It strikes a unique balance between practical challenges in modern biology and fundamental algorithmic ideas, thus capturing the interest of students of biology and computer science students alike.Each chapter begins with a central biological question, such as "Are There Fragile Regions in the Human Genome?" or "Which DNA Patterns Play the Role of Molecular Clocks?" and then steadily develops the algorithmic sophistication required to answer this question. Hundreds of exercises are incorporated directly into the text as soon as they are needed; readers can test their knowledge through automated coding challenges on Rosalind (http://rosalind.info), an online platform for learning bioinformatics.The textbook website (http://bioinformaticsalgorithms.org) directs readers toward additional educational materials, including video lectures and PowerPoint slides.

125 Problems in Text Algorithms

Author : Maxime Crochemore
Publisher : Cambridge University Press
ISBN 13 : 110883583X
Total Pages : 345 pages
Book Rating : 4.1/5 (88 download)

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Book Synopsis 125 Problems in Text Algorithms by : Maxime Crochemore

Download or read book 125 Problems in Text Algorithms written by Maxime Crochemore and published by Cambridge University Press. This book was released on 2021-07 with total page 345 pages. Available in PDF, EPUB and Kindle. Book excerpt: Worked problems offer an interesting way to learn and practice with key concepts of string algorithms and combinatorics on words.

Managing Gigabytes

Author : Ian H. Witten
Publisher : Morgan Kaufmann
ISBN 13 : 9781558605701
Total Pages : 572 pages
Book Rating : 4.6/5 (57 download)

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Book Synopsis Managing Gigabytes by : Ian H. Witten

Download or read book Managing Gigabytes written by Ian H. Witten and published by Morgan Kaufmann. This book was released on 1999-05-03 with total page 572 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This book is the Bible for anyone who needs to manage large data collections. It's required reading for our search gurus at Infoseek. The authors have done an outstanding job of incorporating and describing the most significant new research in information retrieval over the past five years into this second edition." Steve Kirsch, Cofounder, Infoseek Corporation "The new edition of Witten, Moffat, and Bell not only has newer and better text search algorithms but much material on image analysis and joint image/text processing. If you care about search engines, you need this book: it is the only one with full details of how they work. The book is both detailed and enjoyable; the authors have combined elegant writing with top-grade programming." Michael Lesk, National Science Foundation "The coverage of compression, file organizations, and indexing techniques for full text and document management systems is unsurpassed. Students, researchers, and practitioners will all benefit from reading this book." Bruce Croft, Director, Center for Intelligent Information Retrieval at the University of Massachusetts In this fully updated second edition of the highly acclaimed Managing Gigabytes, authors Witten, Moffat, and Bell continue to provide unparalleled coverage of state-of-the-art techniques for compressing and indexing data. Whatever your field, if you work with large quantities of information, this book is essential reading--an authoritative theoretical resource and a practical guide to meeting the toughest storage and access challenges. It covers the latest developments in compression and indexing and their application on the Web and in digital libraries. It also details dozens of powerful techniques supported by mg, the authors' own system for compressing, storing, and retrieving text, images, and textual images. mg's source code is freely available on the Web.