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Statistical Physics In Biology
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Book Synopsis Statistical Physics for Biological Matter by : Wokyung Sung
Download or read book Statistical Physics for Biological Matter written by Wokyung Sung and published by Springer. This book was released on 2018-10-19 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to cover a broad range of topics in statistical physics, including statistical mechanics (equilibrium and non-equilibrium), soft matter and fluid physics, for applications to biological phenomena at both cellular and macromolecular levels. It is intended to be a graduate level textbook, but can also be addressed to the interested senior level undergraduate. The book is written also for those involved in research on biological systems or soft matter based on physics, particularly on statistical physics. Typical statistical physics courses cover ideal gases (classical and quantum) and interacting units of simple structures. In contrast, even simple biological fluids are solutions of macromolecules, the structures of which are very complex. The goal of this book to fill this wide gap by providing appropriate content as well as by explaining the theoretical method that typifies good modeling, namely, the method of coarse-grained descriptions that extract the most salient features emerging at mesoscopic scales. The major topics covered in this book include thermodynamics, equilibrium statistical mechanics, soft matter physics of polymers and membranes, non-equilibrium statistical physics covering stochastic processes, transport phenomena and hydrodynamics. Generic methods and theories are described with detailed derivations, followed by applications and examples in biology. The book aims to help the readers build, systematically and coherently through basic principles, their own understanding of nonspecific concepts and theoretical methods, which they may be able to apply to a broader class of biological problems.
Book Synopsis Computational Biology by : Ralf Blossey
Download or read book Computational Biology written by Ralf Blossey and published by CRC Press. This book was released on 2006-05-25 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative methods have a particular knack for improving any field they touch. For biology, computational techniques have led to enormous strides in our understanding of biological systems, but there is still vast territory to cover. Statistical physics especially holds great potential for elucidating the structural-functional relationships in bi
Book Synopsis Statistical Physics of Biomolecules by : Daniel M. Zuckerman
Download or read book Statistical Physics of Biomolecules written by Daniel M. Zuckerman and published by CRC Press. This book was released on 2010-06-02 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: From the hydrophobic effect to protein-ligand binding, statistical physics is relevant in almost all areas of molecular biophysics and biochemistry, making it essential for modern students of molecular behavior. But traditional presentations of this material are often difficult to penetrate. Statistical Physics of Biomolecules: An Introduction brin
Book Synopsis Molecular Driving Forces by : Ken Dill
Download or read book Molecular Driving Forces written by Ken Dill and published by Garland Science. This book was released on 2010-10-21 with total page 784 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular Driving Forces, Second Edition E-book is an introductory statistical thermodynamics text that describes the principles and forces that drive chemical and biological processes. It demonstrates how the complex behaviors of molecules can result from a few simple physical processes, and how simple models provide surprisingly accurate insights into the workings of the molecular world. Widely adopted in its First Edition, Molecular Driving Forces is regarded by teachers and students as an accessible textbook that illuminates underlying principles and concepts. The Second Edition includes two brand new chapters: (1) "Microscopic Dynamics" introduces single molecule experiments; and (2) "Molecular Machines" considers how nanoscale machines and engines work. "The Logic of Thermodynamics" has been expanded to its own chapter and now covers heat, work, processes, pathways, and cycles. New practical applications, examples, and end-of-chapter questions are integrated throughout the revised and updated text, exploring topics in biology, environmental and energy science, and nanotechnology. Written in a clear and reader-friendly style, the book provides an excellent introduction to the subject for novices while remaining a valuable resource for experts.
Book Synopsis Statistical Physics of Fields by : Mehran Kardar
Download or read book Statistical Physics of Fields written by Mehran Kardar and published by Cambridge University Press. This book was released on 2007-06-07 with total page 376 pages. Available in PDF, EPUB and Kindle. Book excerpt: While many scientists are familiar with fractals, fewer are familiar with scale-invariance and universality which underlie the ubiquity of their shapes. These properties may emerge from the collective behaviour of simple fundamental constituents, and are studied using statistical field theories. Initial chapters connect the particulate perspective developed in the companion volume, to the coarse grained statistical fields studied here. Based on lectures taught by Professor Kardar at MIT, this textbook demonstrates how such theories are formulated and studied. Perturbation theory, exact solutions, renormalization groups, and other tools are employed to demonstrate the emergence of scale invariance and universality, and the non-equilibrium dynamics of interfaces and directed paths in random media are discussed. Ideal for advanced graduate courses in statistical physics, it contains an integrated set of problems, with solutions to selected problems at the end of the book and a complete set available to lecturers at www.cambridge.org/9780521873413.
Book Synopsis Lectures On Statistical Physics And Protein Folding by : Kerson Huang
Download or read book Lectures On Statistical Physics And Protein Folding written by Kerson Huang and published by World Scientific. This book was released on 2005-05-30 with total page 159 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book introduces an approach to protein folding from the point of view of kinetic theory. There is an abundance of data on protein folding, but few proposals are available on the mechanism driving the process. Here, presented for the first time, are suggestions on possible research directions, as developed by the author in collaboration with C C Lin.The first half of this invaluable book contains a concise but relatively complete review of relevant topics in statistical mechanics and kinetic theory. It includes standard topics such as thermodynamics, the Maxwell-Boltzmann distribution, and ensemble theory. Special discussions include the dynamics of phase transitions, and Brownian motion as an illustration of stochastic processes.The second half develops topics in molecular biology and protein structure, with a view to discovering mechanisms underlying protein folding. Attention is focused on the energy flow through the protein in its folded state. A mathematical model, based on the Brownian motion of coupled harmonic oscillators, is worked out in the appendix.
Book Synopsis Physics in Molecular Biology by : Kim Sneppen
Download or read book Physics in Molecular Biology written by Kim Sneppen and published by Cambridge University Press. This book was released on 2005-08-25 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book, first published in 2005, is a discussion for advanced physics students of how to use physics to model biological systems.
Book Synopsis New Trends in Statistical Physics by : Alfredo Mac¡as
Download or read book New Trends in Statistical Physics written by Alfredo Mac¡as and published by World Scientific. This book was released on 2010 with total page 373 pages. Available in PDF, EPUB and Kindle. Book excerpt: Prof Leopoldo Garcia-Colin will become 80 years old in 2010, therefore we are interested in the publication of a Festschrift (book) to honor him. Prof Garcia-Colin has worked in many different fields of statistical physics, and has applied it to biological physics, solid state physics, relativity and cosmology. We are planning a 500 pages book with original and peer-reviewed articles from his friends and former students. We may buy about 100 copies of it.
Book Synopsis Physics With Illustrative Examples From Medicine and Biology by : George B. Benedek
Download or read book Physics With Illustrative Examples From Medicine and Biology written by George B. Benedek and published by Springer. This book was released on 2000-06-09 with total page 549 pages. Available in PDF, EPUB and Kindle. Book excerpt: A reissue of a classic book, intended for undergraduate courses in biophysics, biological physics, physiology, medical physics, and biomedical engineering. This is an introduction to mechanics, with examples and problems from the medical and biological sciences, covering standard topics of kinematics, dynamics, statics, momentum, and feedback, control and stability but with the emphasis on physical and biological systems. The book can be used as a supplement to standard introductory physics courses, as well as for medical schools, medical physics courses, and biology departments. The three volumes combined present all the major topics in physics. Originally published in 1974 from the authors typescript, this reissue will be edited, corrected, typeset, the art redrawn, and an index added, plus a solutions manual will also be available.
Book Synopsis Gibbs Measures In Biology And Physics: The Potts Model by : Utkir A Rozikov
Download or read book Gibbs Measures In Biology And Physics: The Potts Model written by Utkir A Rozikov and published by World Scientific. This book was released on 2022-07-28 with total page 367 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents recently obtained mathematical results on Gibbs measures of the q-state Potts model on the integer lattice and on Cayley trees. It also illustrates many applications of the Potts model to real-world situations in biology, physics, financial engineering, medicine, and sociology, as well as in some examples of alloy behavior, cell sorting, flocking birds, flowing foams, and image segmentation.Gibbs measure is one of the important measures in various problems of probability theory and statistical mechanics. It is a measure associated with the Hamiltonian of a biological or physical system. Each Gibbs measure gives a state of the system.The main problem for a given Hamiltonian on a countable lattice is to describe all of its possible Gibbs measures. The existence of some values of parameters at which the uniqueness of Gibbs measure switches to non-uniqueness is interpreted as a phase transition.This book informs the reader about what has been (mathematically) done in the theory of Gibbs measures of the Potts model and the numerous applications of the Potts model. The main aim is to facilitate the readers (in mathematical biology, statistical physics, applied mathematics, probability and measure theory) to progress into an in-depth understanding by giving a systematic review of the theory of Gibbs measures of the Potts model and its applications.
Book Synopsis Foundations of Complex-system Theories by : Sunny Y. Auyang
Download or read book Foundations of Complex-system Theories written by Sunny Y. Auyang and published by Cambridge University Press. This book was released on 1998 with total page 422 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analyzes approaches to the study of complexity in the physical, biological, and social sciences.
Book Synopsis Statistical Physics of Particles by : Mehran Kardar
Download or read book Statistical Physics of Particles written by Mehran Kardar and published by Cambridge University Press. This book was released on 2007-06-07 with total page 211 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical physics has its origins in attempts to describe the thermal properties of matter in terms of its constituent particles, and has played a fundamental role in the development of quantum mechanics. Based on lectures taught by Professor Kardar at MIT, this textbook introduces the central concepts and tools of statistical physics. It contains a chapter on probability and related issues such as the central limit theorem and information theory, and covers interacting particles, with an extensive description of the van der Waals equation and its derivation by mean field approximation. It also contains an integrated set of problems, with solutions to selected problems at the end of the book and a complete set of solutions is available to lecturers on a password protected website at www.cambridge.org/9780521873420. A companion volume, Statistical Physics of Fields, discusses non-mean field aspects of scaling and critical phenomena, through the perspective of renormalization group.
Book Synopsis Thermodynamics and Statistical Mechanics of Macromolecular Systems by : Michael Bachmann
Download or read book Thermodynamics and Statistical Mechanics of Macromolecular Systems written by Michael Bachmann and published by Cambridge University Press. This book was released on 2014-04-24 with total page 359 pages. Available in PDF, EPUB and Kindle. Book excerpt: The structural mechanics of proteins that fold into functional shapes, polymers that aggregate and form clusters, and organic macromolecules that bind to inorganic matter can only be understood through statistical physics and thermodynamics. This book reviews the statistical mechanics concepts and tools necessary for the study of structure formation processes in macromolecular systems that are essentially influenced by finite-size and surface effects. Readers are introduced to molecular modeling approaches, advanced Monte Carlo simulation techniques, and systematic statistical analyses of numerical data. Applications to folding, aggregation, and substrate adsorption processes of polymers and proteins are discussed in great detail. Particular emphasis is placed on the reduction of complexity by coarse-grained modeling, which allows for the efficient, systematic investigation of structural phases and transitions. Providing insight into modern research at this interface between physics, chemistry, biology, and nanotechnology, this book is an excellent reference for graduate students and researchers.
Book Synopsis Computational Biology by : Ralf Blossey
Download or read book Computational Biology written by Ralf Blossey and published by CRC Press. This book was released on 2019-06-11 with total page 277 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational biology has developed rapidly during the last two decades following the genomic revolution which culminated in the sequencing of the human genome. More than ever it has developed into a field which embraces computational methods from different branches of the exact sciences: pure and applied mathematics, computer science, theoretical physics. This Second Edition provides a solid introduction to the techniques of statistical mechanics for graduate students and researchers in computational biology and biophysics. Material has been reorganized to clarify equilbrium and nonequilibrium aspects of biomolecular systems Content has been expanded, in particular in the treatment of the electrostatic interactions of biomolecules and the application of non-equilibrium statistical mechanics to biomolecules New network-based approaches for the study of proteins are presented. All treated topics are put firmly in the context of the current research literature, allowing the reader to easily follow an individual path into a specific research field. Exercises and Tasks accompany the presentations of the topics with the intention of enabling the readers to test their comprehension of the developed basic concepts.
Book Synopsis A Concise Introduction to the Statistical Physics of Complex Systems by : Eric Bertin
Download or read book A Concise Introduction to the Statistical Physics of Complex Systems written by Eric Bertin and published by Springer Science & Business Media. This book was released on 2011-09-28 with total page 85 pages. Available in PDF, EPUB and Kindle. Book excerpt: This concise primer (based on lectures given at summer schools on complex systems and on a masters degree course in complex systems modeling) will provide graduate students and newcomers to the field with the basic knowledge of the concepts and methods of statistical physics and its potential for application to interdisciplinary topics. Indeed, in recent years, statistical physics has begun to attract the interest of a broad community of researchers in the field of complex system sciences, ranging from biology to the social sciences, economics and computer science. More generally, a growing number of graduate students and researchers feel the need to learn some basic concepts and questions originating in other disciplines without necessarily having to master all of the corresponding technicalities and jargon. Generally speaking, the goals of statistical physics may be summarized as follows: on the one hand to study systems composed of a large number of interacting ‘entities’, and on the other to predict the macroscopic (or collective) behavior of the system considered from the microscopic laws ruling the dynamics of the individual ‘entities’. These two goals are, to some extent, also shared by what is nowadays called ‘complex systems science’ and for these reasons, systems studied in the framework of statistical physics may be considered as among the simplest examples of complex systems—allowing in addition a rather well developed mathematical treatment.
Book Synopsis Statistical Mechanics in a Nutshell, Second Edition by : Luca Peliti
Download or read book Statistical Mechanics in a Nutshell, Second Edition written by Luca Peliti and published by Princeton University Press. This book was released on 2024-08-06 with total page 577 pages. Available in PDF, EPUB and Kindle. Book excerpt: The essential introduction to modern statistical mechanics—now completely updated and expanded Statistical mechanics is one of the most exciting areas of physics today and has applications to subjects ranging from economics and social behavior to algorithmic theory and evolutionary biology. Statistical Mechanics in a Nutshell provides a self-contained introduction to this rapidly developing field. Starting with the basics of kinetic theory and requiring only a background in elementary calculus and mechanics, this concise book discusses the most important developments of recent decades and guides readers to the very threshold of today’s cutting-edge research. Features a new chapter on stochastic thermodynamics with an introduction to the thermodynamics of information—the first treatment of its kind in an introductory textbook Offers a more detailed account of numerical simulations, including simulated annealing and other accelerated Monte Carlo methods The chapter on complex systems now features an accessible introduction to the replica theory of spin glasses and the Hopfield theory of neural networks, with an emphasis on applications Provides a new discussion of defect-mediated transitions and their implications for two-dimensional melting An invaluable resource for graduate students and advanced undergraduates seeking a compact primer on the core ideas of statistical mechanics Solutions manual (available only to instructors)
Book Synopsis Statistical Mechanics: Theory and Molecular Simulation by : Mark Tuckerman
Download or read book Statistical Mechanics: Theory and Molecular Simulation written by Mark Tuckerman and published by OUP Oxford. This book was released on 2010-02-11 with total page 719 pages. Available in PDF, EPUB and Kindle. Book excerpt: Complex systems that bridge the traditional disciplines of physics, chemistry, biology, and materials science can be studied at an unprecedented level of detail using increasingly sophisticated theoretical methodology and high-speed computers. The aim of this book is to prepare burgeoning users and developers to become active participants in this exciting and rapidly advancing research area by uniting for the first time, in one monograph, the basic concepts of equilibrium and time-dependent statistical mechanics with the modern techniques used to solve the complex problems that arise in real-world applications. The book contains a detailed review of classical and quantum mechanics, in-depth discussions of the most commonly used ensembles simultaneously with modern computational techniques such as molecular dynamics and Monte Carlo, and important topics including free-energy calculations, linear-response theory, harmonic baths and the generalized Langevin equation, critical phenomena, and advanced conformational sampling methods. Burgeoning users and developers are thus provided firm grounding to become active participants in this exciting and rapidly advancing research area, while experienced practitioners will find the book to be a useful reference tool for the field.
