Repetitive Structures In Biological Sequences Algorithms And Applications

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Repetitive Structures in Biological Sequences: Algorithms and Applications

Author : Marco Pellegrini
Publisher : Frontiers Media SA
ISBN 13 : 288945018X
Total Pages : 95 pages
Book Rating : 4.8/5 (894 download)

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Book Synopsis Repetitive Structures in Biological Sequences: Algorithms and Applications by : Marco Pellegrini

Download or read book Repetitive Structures in Biological Sequences: Algorithms and Applications written by Marco Pellegrini and published by Frontiers Media SA. This book was released on 2016-10-27 with total page 95 pages. Available in PDF, EPUB and Kindle. Book excerpt: Repetitive structures in biological sequences are emerging as an active focus of research and the unifying concept of "repeatome" (the ensemble of knowledge associated with repeating structures in genomic/proteomic sequences) has been recently proposed in order to highlight several converging trends. One main trend is the ongoing discovery that genomic repetitions are linked to many biological significant events and functions. Diseases (e.g. Huntington's disease) have been causally linked with abnormal expansion of certain repeating sequences in the human genome. Deletions or multiple copy duplications of genes (Copy Number Variations) are important in the aetiology of cancer, Alzheimer, and Parkinson diseases. A second converging trend has been the emergence of many different models and algorithms for detecting non-obvious repeating patterns in strings with applications to in genomic data. Borrowing methodologies from combinatorial pattern, matching, string algorithms, data structures, data mining and machine learning these new approaches break the limitations of the current approaches and offer a new way to design better trans-disciplinary research. The articles collected in this book provides a glance into the rich emerging area of repeatome research, addressing some of its pressing challenges. We believe that these contributions are valuable resources for repeatome research and will stimulate further research from bioinformatic, statistical, and biological points of view.

Algorithms on Strings, Trees, and Sequences

Author : Dan Gusfield
Publisher : Cambridge University Press
ISBN 13 : 1139811002
Total Pages : 556 pages
Book Rating : 4.1/5 (398 download)

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Book Synopsis Algorithms on Strings, Trees, and Sequences by : Dan Gusfield

Download or read book Algorithms on Strings, Trees, and Sequences written by Dan Gusfield and published by Cambridge University Press. This book was released on 1997-05-28 with total page 556 pages. Available in PDF, EPUB and Kindle. Book excerpt: String algorithms are a traditional area of study in computer science. In recent years their importance has grown dramatically with the huge increase of electronically stored text and of molecular sequence data (DNA or protein sequences) produced by various genome projects. This book is a general text on computer algorithms for string processing. In addition to pure computer science, the book contains extensive discussions on biological problems that are cast as string problems, and on methods developed to solve them. It emphasises the fundamental ideas and techniques central to today's applications. New approaches to this complex material simplify methods that up to now have been for the specialist alone. With over 400 exercises to reinforce the material and develop additional topics, the book is suitable as a text for graduate or advanced undergraduate students in computer science, computational biology, or bio-informatics. Its discussion of current algorithms and techniques also makes it a reference for professionals.

Biological Sequence Analysis

Author : Richard Durbin
Publisher : Cambridge University Press
ISBN 13 : 113945739X
Total Pages : 372 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Biological Sequence Analysis by : Richard Durbin

Download or read book Biological Sequence Analysis written by Richard Durbin and published by Cambridge University Press. This book was released on 1998-04-23 with total page 372 pages. Available in PDF, EPUB and Kindle. Book excerpt: Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and probabilistic evolutionary models for inferring phylogenies of sequences from different organisms. This book gives a unified, up-to-date and self-contained account, with a Bayesian slant, of such methods, and more generally to probabilistic methods of sequence analysis. Written by an interdisciplinary team of authors, it aims to be accessible to molecular biologists, computer scientists, and mathematicians with no formal knowledge of the other fields, and at the same time present the state-of-the-art in this new and highly important field.

Field Programmable Logic and Application

Author : Jürgen Becker
Publisher : Springer Science & Business Media
ISBN 13 : 3540229892
Total Pages : 1226 pages
Book Rating : 4.5/5 (42 download)

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Book Synopsis Field Programmable Logic and Application by : Jürgen Becker

Download or read book Field Programmable Logic and Application written by Jürgen Becker and published by Springer Science & Business Media. This book was released on 2004-08-19 with total page 1226 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 14th International Conference on Field-Programmable Logic, FPL 2003, held in Leuven, Belgium in August/September 2004. The 78 revised full papers, 45 revised short papers, and 29 poster abstracts presented together with 3 keynote contributions and 3 tutorial summaries were carefully reviewed and selected from 285 papers submitted. The papers are organized in topical sections on organic and biologic computing, security and cryptography, platform-based design, algorithms and architectures, acceleration application, architecture, physical design, arithmetic, multitasking, circuit technology, network processing, testing, applications, signal processing, computational models and compiler, dynamic reconfiguration, networks and optimisation algorithms, system-on-chip, high-speed design, image processing, network-on-chip, power-aware design, IP-based design, co-processing architectures, system level design, physical interconnect, computational models, cryptography and compression, network applications and architecture, and debugging and test.

Bioinformatics

Author : Andrzej Polanski
Publisher : Springer Science & Business Media
ISBN 13 : 3540241663
Total Pages : 386 pages
Book Rating : 4.5/5 (42 download)

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Book Synopsis Bioinformatics by : Andrzej Polanski

Download or read book Bioinformatics written by Andrzej Polanski and published by Springer Science & Business Media. This book was released on 2007-04-19 with total page 386 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook presents mathematical models in bioinformatics and describes biological problems that inspire the computer science tools used to manage the enormous data sets involved. The first part of the book covers mathematical and computational methods, with practical applications presented in the second part. The mathematical presentation avoids unnecessary formalism, while remaining clear and precise. The book closes with a thorough bibliography, reaching from classic research results to very recent findings. This volume is suited for a senior undergraduate or graduate course on bioinformatics, with a strong focus on mathematical and computer science background.

Algorithms in Computational Molecular Biology

Author : Mourad Elloumi
Publisher : John Wiley & Sons
ISBN 13 : 1118101987
Total Pages : 1027 pages
Book Rating : 4.1/5 (181 download)

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Book Synopsis Algorithms in Computational Molecular Biology by : Mourad Elloumi

Download or read book Algorithms in Computational Molecular Biology written by Mourad Elloumi and published by John Wiley & Sons. This book was released on 2011-04-04 with total page 1027 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book represents the most comprehensive and up-to-date collection of information on the topic of computational molecular biology. Bringing the most recent research into the forefront of discussion, Algorithms in Computational Molecular Biology studies the most important and useful algorithms currently being used in the field, and provides related problems. It also succeeds where other titles have failed, in offering a wide range of information from the introductory fundamentals right up to the latest, most advanced levels of study.

Soft Computing: Theories and Applications

Author : Tarun K. Sharma
Publisher : Springer Nature
ISBN 13 : 9811616965
Total Pages : 572 pages
Book Rating : 4.8/5 (116 download)

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Book Synopsis Soft Computing: Theories and Applications by : Tarun K. Sharma

Download or read book Soft Computing: Theories and Applications written by Tarun K. Sharma and published by Springer Nature. This book was released on 2021-06-26 with total page 572 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on soft computing and how it can be applied to solve real-world problems arising in various domains, ranging from medicine and healthcare, to supply chain management, image processing and cryptanalysis. It gathers high-quality papers presented at the International Conference on Soft Computing: Theories and Applications (SoCTA 2020), organized online. The book is divided into two volumes and offers valuable insights into soft computing for teachers and researchers alike; the book will inspire further research in this dynamic field.

7th International Conference on Practical Applications of Computational Biology & Bioinformatics

Author : Mohd Saberi Mohamad
Publisher : Springer Science & Business Media
ISBN 13 : 3319005782
Total Pages : 160 pages
Book Rating : 4.3/5 (19 download)

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Book Synopsis 7th International Conference on Practical Applications of Computational Biology & Bioinformatics by : Mohd Saberi Mohamad

Download or read book 7th International Conference on Practical Applications of Computational Biology & Bioinformatics written by Mohd Saberi Mohamad and published by Springer Science & Business Media. This book was released on 2013-04-19 with total page 160 pages. Available in PDF, EPUB and Kindle. Book excerpt: The growth in the Bioinformatics and Computational Biology fields over the last few years has been remarkable and the trend is to increase its pace. In fact, the need for computational techniques that can efficiently handle the huge amounts of data produced by the new experimental techniques in Biology is still increasing driven by new advances in Next Generation Sequencing, several types of the so called omics data and image acquisition, just to name a few. The analysis of the datasets that produces and its integration call for new algorithms and approaches from fields such as Databases, Statistics, Data Mining, Machine Learning, Optimization, Computer Science and Artificial Intelligence. Within this scenario of increasing data availability, Systems Biology has also been emerging as an alternative to the reductionist view that dominated biological research in the last decades. Indeed, Biology is more and more a science of information requiring tools from the computational sciences. In the last few years, we have seen the surge of a new generation of interdisciplinary scientists that have a strong background in the biological and computational sciences. In this context, the interaction of researchers from different scientific fields is, more than ever, of foremost importance boosting the research efforts in the field and contributing to the education of a new generation of Bioinformatics scientists. PACBB‘13 hopes to contribute to this effort promoting this fruitful interaction. PACBB'13 technical program included 19 papers from a submission pool of 32 papers spanning many different sub-fields in Bioinformatics and Computational Biology. Therefore, the conference will certainly have promoted the interaction of scientists from diverse research groups and with a distinct background (computer scientists, mathematicians, biologists). The scientific content will certainly be challenging and will promote the improvement of the work that is being developed by each of the participants.

Bioinformatics Research and Applications

Author : Leonidas Bleris
Publisher : Springer
ISBN 13 : 3642301916
Total Pages : 344 pages
Book Rating : 4.6/5 (423 download)

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Book Synopsis Bioinformatics Research and Applications by : Leonidas Bleris

Download or read book Bioinformatics Research and Applications written by Leonidas Bleris and published by Springer. This book was released on 2012-05-10 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the International Symposium on Bioinformatics Research and Applications, ISBRA 2012, held in Dallas, Texas, USA, in May 2012. The 26 revised full papers presented together with five invited talks were carefully reviewed and selected from 66 submissions. The papers address issues on various aspects of bioinformatics and computational biology and their applications.

Distributed Computing -- IWDC 2004

Author : Nabanita Das
Publisher : Springer
ISBN 13 : 354030536X
Total Pages : 564 pages
Book Rating : 4.5/5 (43 download)

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Book Synopsis Distributed Computing -- IWDC 2004 by : Nabanita Das

Download or read book Distributed Computing -- IWDC 2004 written by Nabanita Das and published by Springer. This book was released on 2004-12-07 with total page 564 pages. Available in PDF, EPUB and Kindle. Book excerpt: Last, but not least, thanks to all the participants and authors. We hope that they enjoyed the workshop as much as the wonderful and culturally vibrant city of Kolkata! Bhabani P. Sinha Indian Statistical Institute, Kolkata, India December 2004 Sajal K. Das University of Texas, Arlington, USA December 2004 Program Chairs’ Message On behalf of the Technical Program Committee of the 6th International Wo- shop on Distributed Computing, IWDC 2004, it was our great pleasure to w- come the attendees to Kolkata, India. Over the last few years, IWDC has emerged as an internationally renowned forum for interaction among researchers from academia and industries around the world. A clear indicator of this fact is the large number of high-quality submissions of technical papers received by the workshop this year. The workshop program consisted of 12 technical sessions with 54 contributed papers, two keynote addresses, four tutorials, a panel, a poster session and the Prof.A.K.ChoudhuryMemorialLecture.TheIWDCProgramCommittee,c- prising 38 distinguished members, worked hard to organize the technical p- gram. Following a rigorous review process, out of 157 submissions only 54 - pers were accepted for presentation in the technical sessions; 27 of the accepted papers were classi?ed as regular papers and the remaining 27 as short papers. Another 11 papers were accepted for presentation in the poster session, each with a one-page abstract appearing in the proceedings.

Bioinformatics Research and Development

Author : Mourad Elloumi
Publisher : Springer Science & Business Media
ISBN 13 : 3540706003
Total Pages : 613 pages
Book Rating : 4.5/5 (47 download)

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Book Synopsis Bioinformatics Research and Development by : Mourad Elloumi

Download or read book Bioinformatics Research and Development written by Mourad Elloumi and published by Springer Science & Business Media. This book was released on 2008-08-31 with total page 613 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the papers which were selected for presentation at the second Bio- formatics Research and Development (BIRD) conference held in Vienna, Austria during July 7–9, 2008. BIRD covers a wide range of topics related to bioinformatics. This year sequence analysis and alignment, pathways, networks, systems biology, protein and RNA structure and function, gene expression/regulation and microarrays, databases and data integration, machine learning and data analysis were the subjects of main interest. The decisions of the Program Committee are based on the recommendations of at least three, up to five, reviews for each paper. As a result, 30 of the 61 submitted c- tributions could be accepted for the conference. We were happy to have three invited talks presented by experienced researchers providing visitors with a good overview but also some very important insights into the fascinating domain of bioinformatics. Abstracts and more information on these talks are provided in the conference program as well as at the conference site. In the second part of this volume the selected contributions of the two workshops which were held in parallel to the main conference are presented: Workshop on - namical Aspects of Perturbation, Intervention and Transition in Biological Systems – PETRIN 2008 and Workshop on Algorithms in Molecular Biology – ALBIO 2008 Poster presentations of the BIRD conference are in the companion proceedings published by the Trauner Verlag, Linz.

Bioinformatics Methods and Protocols

Author : Stephen Misener
Publisher : Springer Science & Business Media
ISBN 13 : 1592591922
Total Pages : 495 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Bioinformatics Methods and Protocols by : Stephen Misener

Download or read book Bioinformatics Methods and Protocols written by Stephen Misener and published by Springer Science & Business Media. This book was released on 2008-02-02 with total page 495 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computers have become an essential component of modern biology. They help to manage the vast and increasing amount of biological data and continue to play an integral role in the discovery of new biological relationships. This in silico approach to biology has helped to reshape the modern biological sciences. With the biological revolution now among us, it is imperative that each scientist develop and hone today’s bioinformatics skills, if only at a rudimentary level. Bioinformatics Methods and Protocols was conceived as part of the Methods in Molecular Biology series to meet this challenge and to provide the experienced user with useful tips and an up-to-date overview of current developments. It builds upon the foundation that was provided in the two-volume set published in 1994 entitled Computer Analysis of Sequence Data. We divided Bioinformatics Methods and Protocols into five parts, including a thorough survey of the basic sequence analysis software packages that are available at most institutions, as well as the design and implemen- tion of an essential introductory Bioinformatics course. In addition, we included sections describing specialized noncommercial software, databases, and other resources available as part of the World Wide Web and a stimul- ing discussion of some of the computational challenges biologists now face and likely future solutions.

Computational Methods In Sciences And Engineering - Proceedings Of The International Conference (Iccmse 2003)

Author : Theodore E Simos
Publisher : World Scientific
ISBN 13 : 9814485098
Total Pages : 719 pages
Book Rating : 4.8/5 (144 download)

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Book Synopsis Computational Methods In Sciences And Engineering - Proceedings Of The International Conference (Iccmse 2003) by : Theodore E Simos

Download or read book Computational Methods In Sciences And Engineering - Proceedings Of The International Conference (Iccmse 2003) written by Theodore E Simos and published by World Scientific. This book was released on 2003-08-26 with total page 719 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the past few decades, many significant insights have been gained into several areas of computational methods in sciences and engineering. New problems and methodologies have appeared in some areas of sciences and engineering. There is always a need in these fields for the advancement of information exchange.The aim of this book is to facilitate the sharing of ideas, problems and methodologies between computational scientists and engineers in several disciplines. Extended abstracts of papers on the recent advances regarding computational methods in sciences and engineering are provided. The book briefly describes new methods in numerical analysis, computational mathematics, computational and theoretical physics, computational and theoretical chemistry, computational biology, computational mechanics, computational engineering, computational medicine, high performance computing, etc.

Association Analysis Techniques and Applications in Bioinformatics

Author : Qingfeng Chen
Publisher : Springer Nature
ISBN 13 : 9819982510
Total Pages : 396 pages
Book Rating : 4.8/5 (199 download)

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Book Synopsis Association Analysis Techniques and Applications in Bioinformatics by : Qingfeng Chen

Download or read book Association Analysis Techniques and Applications in Bioinformatics written by Qingfeng Chen and published by Springer Nature. This book was released on with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Biocomputing '99 - Proceedings Of The Pacific Symposium

Author : Russ B Altman
Publisher : World Scientific
ISBN 13 : 9814583022
Total Pages : 618 pages
Book Rating : 4.8/5 (145 download)

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Book Synopsis Biocomputing '99 - Proceedings Of The Pacific Symposium by : Russ B Altman

Download or read book Biocomputing '99 - Proceedings Of The Pacific Symposium written by Russ B Altman and published by World Scientific. This book was released on 1998-12-18 with total page 618 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Pacific Symposium on Biocomputing brings together key researchers from the international biocomputing community. It is designed to be maximally responsive to the need for critical mass in subdisciplines within biocomputing. These proceedings contain peer-reviewed articles in computational biology and bioinformatics.

Introduction to Computational Biology

Author : Michael S. Waterman
Publisher : CRC Press
ISBN 13 : 1351437089
Total Pages : 456 pages
Book Rating : 4.3/5 (514 download)

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Book Synopsis Introduction to Computational Biology by : Michael S. Waterman

Download or read book Introduction to Computational Biology written by Michael S. Waterman and published by CRC Press. This book was released on 2018-05-02 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biology is in the midst of a era yielding many significant discoveries and promising many more. Unique to this era is the exponential growth in the size of information-packed databases. Inspired by a pressing need to analyze that data, Introduction to Computational Biology explores a new area of expertise that emerged from this fertile field- the combination of biological and information sciences. This introduction describes the mathematical structure of biological data, especially from sequences and chromosomes. After a brief survey of molecular biology, it studies restriction maps of DNA, rough landmark maps of the underlying sequences, and clones and clone maps. It examines problems associated with reading DNA sequences and comparing sequences to finding common patterns. The author then considers that statistics of pattern counts in sequences, RNA secondary structure, and the inference of evolutionary history of related sequences. Introduction to Computational Biology exposes the reader to the fascinating structure of biological data and explains how to treat related combinatorial and statistical problems. Written to describe mathematical formulation and development, this book helps set the stage for even more, truly interdisciplinary work in biology.

Analyzing Network Data in Biology and Medicine

Author : Nataša Pržulj
Publisher : Cambridge University Press
ISBN 13 : 1108386245
Total Pages : 647 pages
Book Rating : 4.1/5 (83 download)

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Book Synopsis Analyzing Network Data in Biology and Medicine by : Nataša Pržulj

Download or read book Analyzing Network Data in Biology and Medicine written by Nataša Pržulj and published by Cambridge University Press. This book was released on 2019-03-28 with total page 647 pages. Available in PDF, EPUB and Kindle. Book excerpt: The increased and widespread availability of large network data resources in recent years has resulted in a growing need for effective methods for their analysis. The challenge is to detect patterns that provide a better understanding of the data. However, this is not a straightforward task because of the size of the data sets and the computer power required for the analysis. The solution is to devise methods for approximately answering the questions posed, and these methods will vary depending on the data sets under scrutiny. This cutting-edge text introduces biological concepts and biotechnologies producing the data, graph and network theory, cluster analysis and machine learning, before discussing the thought processes and creativity involved in the analysis of large-scale biological and medical data sets, using a wide range of real-life examples. Bringing together leading experts, this text provides an ideal introduction to and insight into the interdisciplinary field of network data analysis in biomedicine.