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Author : Mark D. LeBlanc
Publisher : Oxford University Press, USA
ISBN 13 :
Total Pages : 296 pages
Book Rating : 4.F/5 ( download)
Download or read book Perl for Exploring DNA written by Mark D. LeBlanc and published by Oxford University Press, USA. This book was released on 2007 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: Publisher description
Author : James Tisdall
Publisher : "O'Reilly Media, Inc."
ISBN 13 : 0596550472
Total Pages : 388 pages
Book Rating : 4.5/5 (965 download)
Download or read book Beginning Perl for Bioinformatics written by James Tisdall and published by "O'Reilly Media, Inc.". This book was released on 2001-10-22 with total page 388 pages. Available in PDF, EPUB and Kindle. Book excerpt: With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challenge. Many biologists have a difficult time learning how to apply the language to bioinformatics. The most popular Perl programming books are often too theoretical and too focused on computer science for a non-programming biologist who needs to solve very specific problems.Beginning Perl for Bioinformatics is designed to get you quickly over the Perl language barrier by approaching programming as an important new laboratory skill, revealing Perl programs and techniques that are immediately useful in the lab. Each chapter focuses on solving a particular bioinformatics problem or class of problems, starting with the simplest and increasing in complexity as the book progresses. Each chapter includes programming exercises and teaches bioinformatics by showing and modifying programs that deal with various kinds of practical biological problems. By the end of the book you'll have a solid understanding of Perl basics, a collection of programs for such tasks as parsing BLAST and GenBank, and the skills to take on more advanced bioinformatics programming. Some of the later chapters focus in greater detail on specific bioinformatics topics. This book is suitable for use as a classroom textbook, for self-study, and as a reference.The book covers: Programming basics and working with DNA sequences and strings Debugging your code Simulating gene mutations using random number generators Regular expressions and finding motifs in data Arrays, hashes, and relational databases Regular expressions and restriction maps Using Perl to parse PDB records, annotations in GenBank, and BLAST output
Author : Rex A. Dwyer
Publisher : Cambridge University Press
ISBN 13 : 9780521801775
Total Pages : 360 pages
Book Rating : 4.8/5 (17 download)
Download or read book Genomic Perl written by Rex A. Dwyer and published by Cambridge University Press. This book was released on 2003 with total page 360 pages. Available in PDF, EPUB and Kindle. Book excerpt: This introduction to computational molecular biology will help programmers and biologists learn the skills needed to start work in this important, expanding field. The author explains many of the basic computational problems and gives concise, working programs to solve them in the Perl programming language. With minimal prerequisites, the author explains the biological background for each problem, develops a model for the solution, then introduces the Perl concepts needed to implement the solution. The book covers pairwise and multiple sequence alignment, fast database searches for homologous sequences, protein motif identification, genome rearrangement, physical mapping, phylogeny reconstruction, satellite identification, sequence assembly, gene finding, and RNA secondary structure. The concrete examples and step-by-step approach make it easy to grasp the computational and statistical methods, including dynamic programming, branch-and-bound optimization, greedy methods, maximum likelihood methods, substitution matrices, BLAST searching, and Karlin-Altschul statistics. Perl code is provided on the accompanying CD.
Author : Roger Bilisoly
Publisher : John Wiley & Sons
ISBN 13 : 1118210506
Total Pages : 306 pages
Book Rating : 4.1/5 (182 download)
Download or read book Practical Text Mining with Perl written by Roger Bilisoly and published by John Wiley & Sons. This book was released on 2011-09-20 with total page 306 pages. Available in PDF, EPUB and Kindle. Book excerpt: Provides readers with the methods, algorithms, and means to perform text mining tasks This book is devoted to the fundamentals of text mining using Perl, an open-source programming tool that is freely available via the Internet (www.perl.org). It covers mining ideas from several perspectives--statistics, data mining, linguistics, and information retrieval--and provides readers with the means to successfully complete text mining tasks on their own. The book begins with an introduction to regular expressions, a text pattern methodology, and quantitative text summaries, all of which are fundamental tools of analyzing text. Then, it builds upon this foundation to explore: Probability and texts, including the bag-of-words model Information retrieval techniques such as the TF-IDF similarity measure Concordance lines and corpus linguistics Multivariate techniques such as correlation, principal components analysis, and clustering Perl modules, German, and permutation tests Each chapter is devoted to a single key topic, and the author carefully and thoughtfully introduces mathematical concepts as they arise, allowing readers to learn as they go without having to refer to additional books. The inclusion of numerous exercises and worked-out examples further complements the book's student-friendly format. Practical Text Mining with Perl is ideal as a textbook for undergraduate and graduate courses in text mining and as a reference for a variety of professionals who are interested in extracting information from text documents.
Author : Caroline St. Clair
Publisher : Jones & Bartlett Learning
ISBN 13 : 1284066002
Total Pages : 377 pages
Book Rating : 4.2/5 (84 download)
Download or read book Exploring Bioinformatics: A Project-Based Approach written by Caroline St. Clair and published by Jones & Bartlett Learning. This book was released on 2013-12-12 with total page 377 pages. Available in PDF, EPUB and Kindle. Book excerpt: Thoroughly revised and updated, Exploring Bioinformatics: A Project-Based Approach, Second Edition is intended for an introductory course in bioinformatics at the undergraduate level. Through hands-on projects, students are introduced to current biological problems and then explore and develop bioinformatic solutions to these issues. Each chapter presents a key problem, provides basic biological concepts, introduces computational techniques to address the problem, and guides students through the use of existing web-based tools and software solutions. This progression prepares students to tackle the On-Your-Own Project, where they develop their own software solutions. Topics such as antibiotic resistance, genetic disease, and genome sequencing provide context and relevance to capture student interest.
Author : D. Curtis Jamison
Publisher : John Wiley & Sons
ISBN 13 : 9780471430599
Total Pages : 206 pages
Book Rating : 4.4/5 (35 download)
Download or read book Perl Programming for Biologists written by D. Curtis Jamison and published by John Wiley & Sons. This book was released on 2003-07-14 with total page 206 pages. Available in PDF, EPUB and Kindle. Book excerpt: Working on the assumption that the reader has no formal training in programming, Perl Programming for Biologists demonstrates how Perl is used to solve biological problems. Each chapter opens with a set of learning objectives, provides numerous review questions and self-study exercises, and concludes with a bulleted summary of key points. The author incorporates numerous real-life examples throughout the text. Upon completing the book, readers are able to quickly perform such tasks as correcting recurring errors in spreadsheets, scanning a Fasta sequence for every occurrence of an EcoRI site, adapting other writers' scripts to one's own purposes, and most important, writing reusable and maintainable scripts that spare the rote repetition of code.
Author : Sandra Porter (Ph. D.)
Publisher :
ISBN 13 : 9780976384618
Total Pages : 79 pages
Book Rating : 4.3/5 (846 download)
Download or read book Exploring DNA Structure written by Sandra Porter (Ph. D.) and published by . This book was released on 2005 with total page 79 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Diahan Southard
Publisher :
ISBN 13 : 9781734613902
Total Pages : 250 pages
Book Rating : 4.6/5 (139 download)
Download or read book Your DNA Guide - the Book written by Diahan Southard and published by . This book was released on 2020-02-26 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: You don't have to learn everything about genetic genealogy before asking specific questions of your DNA! That's the premise of Diahan Southard's brand new book, Your DNA Guide - the Book, now available for pre-order at a special sale price. Your DNA Guide - the Book is like no other genetic genealogy book on the market. Instead of learning more-than-you-need-to-know in textbook style, you'll choose a specific DNA question to start exploring right away. You'll follow concrete step-by-step plans, learning important DNA concepts--in plain English--as you go. Do you want to learn who your 2X great grandmother is? Turn to page 23. Do you want to know how you are related to one of your DNA matches? Page 37. As you proceed, you check your progress and get new guidance based on your specific results at each stage. (Including troubleshooting, like when your matches just aren't responding or your great-grandparents turn out to be first cousins.) This powerful, hands-on approach is based on Diahan's 20 years of experience in the genetic genealogy industry and especially in the past five years, as she helps clients one-on-one make DNA discoveries. It became clear to her that while each client's situation may be unique, there are patterns in how you can find solutions that you can apply yourself. Your DNA Guide - the Book is for anyone who has taken a DNA test or may want to. It helps genealogists reconstruct family trees. It helps adoptees identify biological relatives. It can help you identify a specific DNA match. In short, it helps anyone explore what their DNA--and their DNA matches--can tell them about their origins.
Author : John Smith
Publisher : Independently Published
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.3/5 (241 download)
Download or read book Mastering Perl for Bioinformatics written by John Smith and published by Independently Published. This book was released on 2024-04-27 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Mastering Perl for Bioinformatics" is an essential resource designed to equip researchers, professionals, and students with the Perl programming skills required to tackle the computational challenges of modern biology. Covering fundamental to advanced techniques, this book provides a detailed exploration of how Perl can be employed in the analysis of DNA and RNA, protein sequences, and genomic data, as well as in systems biology and bioinformatics algorithms. Through practical examples, tutorials, and case studies, readers will learn to handle vast biological datasets, develop their own bioinformatics tools, and perform complex analyses. Each chapter dives deep into different aspects of bioinformatics, from basic syntax to the integration of external tools and databases, ensuring that readers can progress from foundational techniques to sophisticated applications seamlessly. Whether you're starting out in computational biology or looking to enhance your data analysis skills, "Mastering Perl for Bioinformatics" offers the comprehensive and accessible guidance necessary to master the tools and methodologies of this crucial science. Gain the Perl expertise to advance your research and unlock new possibilities in biological discovery.
Author : Gabriel Valiente
Publisher : CRC Press
ISBN 13 : 1420069748
Total Pages : 370 pages
Book Rating : 4.4/5 (2 download)
Download or read book Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R written by Gabriel Valiente and published by CRC Press. This book was released on 2009-04-08 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic
Author : Caroline St. Clair
Publisher : Jones & Bartlett Publishers
ISBN 13 : 128402346X
Total Pages : 309 pages
Book Rating : 4.2/5 (84 download)
Download or read book Exploring Bioinformatics written by Caroline St. Clair and published by Jones & Bartlett Publishers. This book was released on 2013-12-12 with total page 309 pages. Available in PDF, EPUB and Kindle. Book excerpt: Thoroughly revised and updated, Exploring Bioinformatics: A Project-Based Approach, Second Edition is intended for an introductory course in bioinformatics at the undergraduate level. Through hands-on projects, students are introduced to current biological problems and then explore and develop bioinformatic solutions to these issues. Each chapter presents a key problem, provides basic biological concepts, introduces computational techniques to address the problem, and guides students through the use of existing web-based tools and software solutions. This progression prepares students to tackle the On-Your-Own Project, where they develop their own software solutions. Topics such as antibiotic resistance, genetic disease, and genome sequencing provide context and relevance to capture student interest.
Author : Lorne T. Kirby
Publisher : Springer
ISBN 13 : 1349120405
Total Pages : 369 pages
Book Rating : 4.3/5 (491 download)
Download or read book DNA Fingerprinting written by Lorne T. Kirby and published by Springer. This book was released on 1990-06-18 with total page 369 pages. Available in PDF, EPUB and Kindle. Book excerpt: DNA fingerprinting is a revolutionary technique that enables law enforcement agencies, diagnostic laboratories and research scientists to identify minute pieces of tissue, to determine parentage and other biological family relationships. This is a study of its applications.
Author : brian d foy
Publisher : "O'Reilly Media, Inc."
ISBN 13 : 1449364977
Total Pages : 397 pages
Book Rating : 4.4/5 (493 download)
Download or read book Mastering Perl written by brian d foy and published by "O'Reilly Media, Inc.". This book was released on 2014-01-09 with total page 397 pages. Available in PDF, EPUB and Kindle. Book excerpt: Take the next step toward Perl mastery with advanced concepts that make coding easier, maintenance simpler, and execution faster. Mastering Perl isn't a collection of clever tricks, but a way of thinking about Perl programming for solving debugging, configuration, and many other real-world problems you’ll encounter as a working programmer. The third in O’Reilly’s series of landmark Perl tutorials (after Learning Perl and Intermediate Perl), this fully upated edition pulls everything together and helps you bend Perl to your will. Explore advanced regular expressions features Avoid common problems when writing secure programs Profile and benchmark Perl programs to see where they need work Wrangle Perl code to make it more presentable and readable Understand how Perl keeps track of package variables Define subroutines on the fly Jury-rig modules to fix code without editing the original source Use bit operations and bit vectors to store large data efficiently Learn how to detect errors that Perl doesn’t report Dive into logging, data persistence, and the magic of tied variables
Author : David Scott
Publisher : Lulu.com
ISBN 13 : 1300607211
Total Pages : 288 pages
Book Rating : 4.3/5 (6 download)
Download or read book Perl for Bio Informatics I written by David Scott and published by Lulu.com. This book was released on 2013-01-07 with total page 288 pages. Available in PDF, EPUB and Kindle. Book excerpt: Go from scripts to functions to programs. Learn bio programming with the Perl development paradigm. Learn to write tested, documented, object oriented code the Perl way.
Author : Steen Knudsen
Publisher : John Wiley & Sons
ISBN 13 : 0471461180
Total Pages : 148 pages
Book Rating : 4.4/5 (714 download)
Download or read book A Biologist's Guide to Analysis of DNA Microarray Data written by Steen Knudsen and published by John Wiley & Sons. This book was released on 2011-09-23 with total page 148 pages. Available in PDF, EPUB and Kindle. Book excerpt: A great introductory book that details reliable approaches to problems met in standard microarray data analyses. It provides examples of established approaches such as cluster analysis, function prediction, and principle component analysis. Discover real examples to illustrate the key concepts of data analysis. Written for those without any advanced background in math, statistics, or computer sciences, this book is essential for anyone interested in harnessing the immense potential of microarrays in biology and medicine.
Author : Graham S. Holton
Publisher : Pen and Sword
ISBN 13 : 1526733102
Total Pages : 299 pages
Book Rating : 4.5/5 (267 download)
Download or read book Tracing Your Ancestors Using DNA written by Graham S. Holton and published by Pen and Sword. This book was released on 2019-02-28 with total page 299 pages. Available in PDF, EPUB and Kindle. Book excerpt: An easy-to-use, straightforward guide for British family historians looking to trace their ancestry using DNA testing. DNA research is one of the most rapidly advancing areas in modern science, and the practical use of DNA testing in genealogy is one of its most exciting applications. Yet there is no recent British publication in this field. That is why this accessible, wide-ranging introduction is so valuable. It offers a clear, practical way into the subject, explaining the scientific discoveries and techniques and illustrating with case studies how it can be used by genealogists to gain an insight into their ancestry. The subject is complex and perhaps difficult for traditional genealogists to understand but, with the aid of this book, novices who are keen to take advantage of it will be able to interpret test results and use them to help answer genealogical questions which cannot be answered by documentary evidence alone. It will also appeal to those with some experience in the field because it places the practical application of genetic genealogy within a wider context, highlighting its role as a genealogical tool and suggesting how it can be made more effective.
Author : Jean-Michel Claverie
Publisher : John Wiley & Sons
ISBN 13 : 1118051106
Total Pages : 475 pages
Book Rating : 4.1/5 (18 download)
Download or read book Bioinformatics For Dummies written by Jean-Michel Claverie and published by John Wiley & Sons. This book was released on 2011-02-10 with total page 475 pages. Available in PDF, EPUB and Kindle. Book excerpt: Were you always curious about biology but were afraid to sit through long hours of dense reading? Did you like the subject when you were in high school but had other plans after you graduated? Now you can explore the human genome and analyze DNA without ever leaving your desktop! Bioinformatics For Dummies is packed with valuable information that introduces you to this exciting new discipline. This easy-to-follow guide leads you step by step through every bioinformatics task that can be done over the Internet. Forget long equations, computer-geek gibberish, and installing bulky programs that slow down your computer. You’ll be amazed at all the things you can accomplish just by logging on and following these trusty directions. You get the tools you need to: Analyze all types of sequences Use all types of databases Work with DNA and protein sequences Conduct similarity searches Build a multiple sequence alignment Edit and publish alignments Visualize protein 3-D structures Construct phylogenetic trees This up-to-date second edition includes newly created and popular databases and Internet programs as well as multiple new genomes. It provides tips for using servers and places to seek resources to find out about what’s going on in the bioinformatics world. Bioinformatics For Dummies will show you how to get the most out of your PC and the right Web tools so you'll be searching databases and analyzing sequences like a pro!
