Omics And Its Integration A Systems Biology Approach To Understanding Plant Physiology

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Omics and its Integration: A Systems Biology Approach to Understanding Plant Physiology

Author : Kashif Ali
Publisher : Frontiers Media SA
ISBN 13 : 2832539785
Total Pages : 155 pages
Book Rating : 4.8/5 (325 download)

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Book Synopsis Omics and its Integration: A Systems Biology Approach to Understanding Plant Physiology by : Kashif Ali

Download or read book Omics and its Integration: A Systems Biology Approach to Understanding Plant Physiology written by Kashif Ali and published by Frontiers Media SA. This book was released on 2023-11-27 with total page 155 pages. Available in PDF, EPUB and Kindle. Book excerpt: Due to the complexity and interconnectivity of many biological processes, an integrative systems biology approach is required to better understand them. The integration of various omics data (including genomics, proteomics, transcriptomics, and metabolomics data) will provide a holistic view that highlights the relationship among the various biomolecules and their functions in plant growth, resistance, quality, and many other important traits. Recent advances in analytical power and in the ability to process large data sets has enabled researchers to integrate multi-omics data and have a much deeper knowledge of the cell, tissue, organ, or even an entire organism being studied. The goal of this Research Topic is not only to publish high-quality and reliable omics data but also to answer the bigger question of how to integrate and correlate different data sets from multiple omics studies. Can one omics data set be used as a primary data set for the design and execution of another omics study? If so, then how it can be done? What are its pre-requisites? How can we plan research involving multi-omics approach to reach a meaningful conclusion? These are the questions that need our attention and their answers are critical for the future of omics-based research. For this Research Topic, we welcome contributors to submit manuscripts related to the following themes: • Studies on plant-based genomics, transcriptomics, proteomics, and metabolomics; • Development of new analytical methods for omics utilizing in plants; • Advancements in the current analytical methods for utilizing omics in plants; • Integration of multi-omics data sets; • Development of new statistical methods for data analysis.

Advances in Plant Omics and Systems Biology Approaches

Author : Flavia Vischi Winck
Publisher : Springer Nature
ISBN 13 : 303080352X
Total Pages : 220 pages
Book Rating : 4.0/5 (38 download)

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Book Synopsis Advances in Plant Omics and Systems Biology Approaches by : Flavia Vischi Winck

Download or read book Advances in Plant Omics and Systems Biology Approaches written by Flavia Vischi Winck and published by Springer Nature. This book was released on 2022-02-03 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the post-genomic era, several plant species have been sequenced and massive genomic information is now available which contributed to expand the development of novel technical strategies for the study of additional levels of biological information of plant species. This book focuses on the “omics” approaches together with systems analysis of several different plant species, which have revealed very interesting variations on the cellular responses at the protein, transcript and metabolite levels in response to changes environmental conditions. The volume covers recent technological advances in the area of “omics” and synthesizes recent findings of the field of plant “omics” and systems biology together along with techniques that can be applied for such studies.

Integrative Omics

Author : Manish Kumar Gupta
Publisher : Elsevier
ISBN 13 : 0443160937
Total Pages : 434 pages
Book Rating : 4.4/5 (431 download)

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Book Synopsis Integrative Omics by : Manish Kumar Gupta

Download or read book Integrative Omics written by Manish Kumar Gupta and published by Elsevier. This book was released on 2024-05-10 with total page 434 pages. Available in PDF, EPUB and Kindle. Book excerpt: Integrative Omics: Concepts, Methodology and Applications provides a holistic and integrated view of defining and applying network approaches, integrative tools, and methods to solve problems for the rationalization of genotype to phenotype relationships. The reference includes a range of chapters in a systemic ‘step by step’ manner, which begins with the basic concepts from Omic to Multi Integrative Omics approaches, followed by their full range of approaches, applications, emerging trends, and future trends. All key areas of Omics are covered including biological databases, sequence alignment, pharmacogenomics, nutrigenomics and microbial omics, integrated omics for Food Science and Identification of genes associated with disease, clinical data integration and data warehousing, translational omics as well as omics technology policy and society research. Integrative Omics: Concepts, Methodology and Applications highlights the recent concepts, methodologies, advancements in technologies and is also well-suited for researchers from both academic and industry background, undergraduate and graduate students who are mainly working in the area of computational systems biology, integrative omics and translational science. The book bridges the gap between biological sciences, physical sciences, computer science, statistics, data science, information technology and mathematics by presenting content specifically dedicated to mathematical models of biological systems. Provides a holistic, integrated view of a defining and applying network approach, integrative tools, and methods to solve problems for rationalization of genotype to phenotype relationships Offers an interdisciplinary approach to Databases, data analytics techniques, biological tools, network construction, analysis, modeling, prediction and simulation of biological systems leading to ‘translational research’, i.e., drug discovery, drug target prediction, and precision medicine Covers worldwide methods, concepts, databases, and tools used in the construction of integrated pathways

PlantOmics: The Omics of Plant Science

Author : Debmalya Barh
Publisher : Springer
ISBN 13 : 8132221729
Total Pages : 839 pages
Book Rating : 4.1/5 (322 download)

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Book Synopsis PlantOmics: The Omics of Plant Science by : Debmalya Barh

Download or read book PlantOmics: The Omics of Plant Science written by Debmalya Barh and published by Springer. This book was released on 2015-03-18 with total page 839 pages. Available in PDF, EPUB and Kindle. Book excerpt: PlantOmics: The Omics of Plant Science provides a comprehensive account of the latest trends and developments of omics technologies or approaches and their applications in plant science. Thirty chapters written by 90 experts from 15 countries are included in this state-of-the-art book. Each chapter describes one topic/omics such as: omics in model plants, spectroscopy for plants, next generation sequencing, functional genomics, cyto-metagenomics, epigenomics, miRNAomics, proteomics, metabolomics, glycomics, lipidomics, secretomics, phenomics, cytomics, physiomics, signalomics, thiolomics, organelle omics, micro morphomics, microbiomics, cryobionomics, nanotechnology, pharmacogenomics, and computational systems biology for plants. It provides up to date information, technologies, and their applications that can be adopted and applied easily for deeper understanding plant biology and therefore will be helpful in developing the strategy for generating cost-effective superior plants for various purposes. In the last chapter, the editors have proposed several new areas in plant omics that may be explored in order to develop an integrated meta-omics strategy to ensure the world and earth’s health and related issues. This book will be a valuable resource to students and researchers in the field of cutting-edge plant omics.

Omics in Plant Breeding

Author : Aluízio Borém
Publisher : John Wiley & Sons
ISBN 13 : 1118820843
Total Pages : 253 pages
Book Rating : 4.1/5 (188 download)

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Book Synopsis Omics in Plant Breeding by : Aluízio Borém

Download or read book Omics in Plant Breeding written by Aluízio Borém and published by John Wiley & Sons. This book was released on 2014-06-03 with total page 253 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational and high-throughput methods, such as genomics, proteomics, and transcriptomics, known collectively as “-omics,” have been used to study plant biology for well over a decade now. As these technologies mature, plant and crop scientists have started using these methods to improve crop varieties. Omics in Plant Breeding provides a timely introduction to key omicsbased methods and their application in plant breeding. Omics in Plant Breeding is a practical and accessible overview of specific omics-based methods ranging from metabolomics to phenomics. Covering a single methodology within each chapter, this book provides thorough coverage that ensures a strong understanding of each methodology both in its application to, and improvement of, plant breeding. Accessible to advanced students, researchers, and professionals, Omics in Plant Breeding will be an essential entry point into this innovative and exciting field. • A valuable overview of high-throughput, genomics-based technologies and their applications to plant breeding • Each chapter explores a single methodology, allowing for detailed and thorough coverage • Coverage ranges from well-established methodologies, such as genomics and proteomics, to emerging technologies, including phenomics and physionomics Aluízio Borém is a Professor of Plant Breeding at the University of Viçosa in Brazil. Roberto Fritsche-Neto is a Professor of Genetics and Plant Breeding at the University of São Paulo in Brazil.

Current Omics Advancement in Plant Abiotic Stress Biology

Author : Deepesh Bhatt
Publisher : Elsevier
ISBN 13 : 044321624X
Total Pages : 489 pages
Book Rating : 4.4/5 (432 download)

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Book Synopsis Current Omics Advancement in Plant Abiotic Stress Biology by : Deepesh Bhatt

Download or read book Current Omics Advancement in Plant Abiotic Stress Biology written by Deepesh Bhatt and published by Elsevier. This book was released on 2024-05-07 with total page 489 pages. Available in PDF, EPUB and Kindle. Book excerpt: Applied Biotechnology Strategies to Combat Plant Abiotic Stress investigates the causal molecular factors underlying the respective mechanisms orchestrated by plants to help alleviate abiotic stress in which Although knowledge of abiotic stresses in crop plants and high throughput tools and biotechnologies is avaiable, in this book, a systematic effort has been made for integrating omics interventions across major sorts of abiotic stresses with special emphasis to major food crops infused with detailed mechanistic understanding, which would furthermore help contribute in dissecting the interdisciplinary areas of omics-driven plant abiotic stress biology in a much better manner. In 32 chapters Applied Biotechnology Strategies to Combat Plant Abiotic Stress focuses on the integration of multi-OMICS biotechnologies in deciphering molecular intricacies of plant abiotic stress namely drought, salt, cold, heat, heavy metals, in major C3 and C4 food crops. Together with this, the book provides updated knowledge of common and unique set of molecular intricacies playing a vital role in coping up severe abiotic stresses in plants deploying multi-OMICS approaches This book is a valuable resource for early researchers, senior academicians, and scientists in the field of biotechnology, biochemistry, molecular biology, researchers in agriculture and, crops for human foods, and all those who wish to broaden their knowledge in the allied field. Describes biotechnological strategies to combat plant abiotic stress Covers the latest evidence based multipronged approaches in understanding omics perspective of stress tolerance Focuses on the integration of multi-OMICS technologies in deciphering molecular intricacies of plant abiotic stress

MALDI Mass Spectrometry Imaging

Author : Tiffany Siegel Porta
Publisher : Royal Society of Chemistry
ISBN 13 : 1839162414
Total Pages : 541 pages
Book Rating : 4.8/5 (391 download)

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Book Synopsis MALDI Mass Spectrometry Imaging by : Tiffany Siegel Porta

Download or read book MALDI Mass Spectrometry Imaging written by Tiffany Siegel Porta and published by Royal Society of Chemistry. This book was released on 2021-12-03 with total page 541 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book gathers knowledge about matrix-assisted laser desorption ionisation (MALDI) mass spectrometry imaging for postgraduate and professional researchers in academia and in industry where it has direct application to clinical research.

Plant Systems Biology

Author : Sacha Baginsky
Publisher : Springer Science & Business Media
ISBN 13 : 376437439X
Total Pages : 362 pages
Book Rating : 4.7/5 (643 download)

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Book Synopsis Plant Systems Biology by : Sacha Baginsky

Download or read book Plant Systems Biology written by Sacha Baginsky and published by Springer Science & Business Media. This book was released on 2007-06-25 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume aims to provide a timely view of the state-of-the-art in systems biology. The editors take the opportunity to define systems biology as they and the contributing authors see it, and this will lay the groundwork for future studies. The volume is well-suited to both students and researchers interested in the methods of systems biology. Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism.

Computational Approaches in Aid of Advancing Understanding in Plant Physiology

Author : Alisdair Fernie
Publisher : Frontiers E-books
ISBN 13 : 288919017X
Total Pages : 164 pages
Book Rating : 4.8/5 (891 download)

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Book Synopsis Computational Approaches in Aid of Advancing Understanding in Plant Physiology by : Alisdair Fernie

Download or read book Computational Approaches in Aid of Advancing Understanding in Plant Physiology written by Alisdair Fernie and published by Frontiers E-books. This book was released on 2012-02-02 with total page 164 pages. Available in PDF, EPUB and Kindle. Book excerpt: The recent data flood has required greater and greater reliance on computational usage in plant biology. This Research Topic will focus on the utility of computational approaches across the breadth of modern plant biology with particular focus on the following areas: (i) Comparative genomics- gene family size in the green lineage (ii) Adaptive evolution - specifics of development (iii) Adaptive evolution - specifics of secondary metabolism (iv) Translational biology- co-response analysis from arabidopsis outwards (v) Conserved(and differential) transcriptional response to stress (vi) Transcriptomics databases (vii) Translatomics (ix) Proteomics- abundance (x) Proteomics- location, (xi) Proteomics- interactions (xii) Proteomics databases (xiii) he activome (xiv)Metabolite-abundance (xv) metabolite- location (xvi) Experimental flux calculations, (xvii)dvanced metabolomic technologies (xviii) metabolite databases (xix) Genome wide metabolic modelling

Abiotic Stress Response in Plants

Author : Narendra Tuteja
Publisher : John Wiley & Sons
ISBN 13 : 3527694587
Total Pages : 456 pages
Book Rating : 4.5/5 (276 download)

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Book Synopsis Abiotic Stress Response in Plants by : Narendra Tuteja

Download or read book Abiotic Stress Response in Plants written by Narendra Tuteja and published by John Wiley & Sons. This book was released on 2016-01-08 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: Understanding abiotic stress responses in plants is critical for the development of new varieties of crops, which are better adapted to harsh climate conditions. The new book by the well-known editor team Narendra Tuteja and Sarvajeet Gill provides a comprehensive overview on the molecular basis of plant responses to external stress like drought or heavy metals, to aid in the engineering of stress resistant crops. After a general introduction into the topic, the following sections deal with specific signaling pathways mediating plant stress response. The last part covers translational plant physiology, describing several examples of the development of more stress-resistant crop varieties.

Plant Omics: Trends and Applications

Author : Khalid Rehman Hakeem
Publisher : Springer
ISBN 13 : 3319317032
Total Pages : 522 pages
Book Rating : 4.3/5 (193 download)

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Book Synopsis Plant Omics: Trends and Applications by : Khalid Rehman Hakeem

Download or read book Plant Omics: Trends and Applications written by Khalid Rehman Hakeem and published by Springer. This book was released on 2016-08-23 with total page 522 pages. Available in PDF, EPUB and Kindle. Book excerpt: To comprehend the organizational principle of cellular functions at diff erent levels, an integrative approach with large-scale experiments, the so-called ‘omics’ data including genomics, transcriptomics, proteomics, and metabolomics, is needed. Omics aims at the collective characterization and quantifi cation of pools of biological molecules that translate into the structure, function, and dynamics of an organism or organisms. Currently, omics is an essential tool to understand the molecular systems that underlie various plant functions. Furthermore, in several plant species, the development of omicsresources has progressed to address the particular biological properties of individual species. Integration of knowledge from omics-based research is an emerging issue as researchers seek to identify significance, gain biological insights and promote translational research. From these perspectives, we intend to provide the emerging aspects of plant systems research based on omics and bioinformatics analyses together with their associated resources and technological advances. Th e present book covers a wide range of omics topics, and discusses the latest trends and application area of plant sciences. In this volume, we have highlighted the working solutions as well as open problems and future challenges in plant omics studies. We believe that this book will initiate and introduce readers to state-of-the-art developments and trends in omics-driven research.

Plant Omics

Author : Hajime Ohyanagi
Publisher : CABI
ISBN 13 : 1789247519
Total Pages : 311 pages
Book Rating : 4.7/5 (892 download)

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Book Synopsis Plant Omics by : Hajime Ohyanagi

Download or read book Plant Omics written by Hajime Ohyanagi and published by CABI. This book was released on 2022-12-14 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a comprehensive overview of plant omics and big data in the fields of plant and crop biology. It discusses each omics layer individually, including genomics, transcriptomics, proteomics, and covers model and non-model species. In a section on advanced topics, it considers developments in each specialized domain, including genome editing and enhanced breeding strategies (such as genomic selection and high-throughput phenotyping), with the aim of providing tools to help tackle global food security issues. The importance of online resources in big data biology are highlighted in a section summarizing both wet- and dry-biological portals. This section introduces biological resources, datasets, online bioinformatics tools and approaches that are in the public domain. This book is for students, engineers, researchers and academics in plant biology, genetics, biotechnology and bioinformatics.

Genomics of Plant–Pathogen Interaction and the Stress Response

Author : Ashutosh Mani
Publisher : CRC Press
ISBN 13 : 1000952452
Total Pages : 217 pages
Book Rating : 4.0/5 (9 download)

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Book Synopsis Genomics of Plant–Pathogen Interaction and the Stress Response by : Ashutosh Mani

Download or read book Genomics of Plant–Pathogen Interaction and the Stress Response written by Ashutosh Mani and published by CRC Press. This book was released on 2023-09-25 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plants are an indispensable part of human and animal lives for nutrition and health. But pests, diseases and abiotic stress adversely affect crop yield, which ultimately places significant pressure on society to provide food to an increasing population. Moreover, it also encourages increased chemical/pesticide usage on crops, which we see in the biomagnification of toxic and hazardous compounds polluting water bodies, soil and the environment. This condition will continue to worsen in the future due to the resistance-acquiring ability of pathogens against plant defense and chemical treatments. In addition, environmental disturbances and consumer health issues are being reported more promptly than before due to intensive use of pesticides in food production. Plant diseases affect our daily lives, as the use of insecticides and pesticides has become part of our food chain. As a result, precise disease diagnosis and management is crucial in order to avoid huge losses in plant production and related commodities. Accurate detection, precise diagnosis and proper management can play a significant role in keeping plants free from pathogens. In this book, scientists, researchers and scholars share their research knowledge, offering a valuable resource for understanding plant diseases, pathogen interaction and responses to stress through an omics perspective, contributing to further advancements in the field Diseases in plants may be caused by various factors, such as viruses, bacteria, fungi and abiotic stress. Disease causes low crop yield, production of poor-quality fruits and grains, and deficiency of nutrients, which have a direct impact on human and animal health. A genomics-based approach can be applied to disease diagnosis; disease outbreak; evolution of plant and pathogen genome for disease outbreak in relation to climate change; and development of long-term strategies for plant health and defense. This book presents an overview of omics technologies and approaches used to understand: 1) the relation between plants and their environment in terms of diseases 2) responses to abiotic stress 3) the genomics of plant–pathogen interaction 4) herbicide-resistance mechanisms 5) the epigenetics of plant–pathogen interaction 6) gene regulation during abiotic stress response 7) the oxidative stress response

Omics and System Biology Approaches for Delivering Better Cereals

Author : Dinesh Kumar Saini
Publisher : CRC Press
ISBN 13 : 104017678X
Total Pages : 612 pages
Book Rating : 4.0/5 (41 download)

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Book Synopsis Omics and System Biology Approaches for Delivering Better Cereals by : Dinesh Kumar Saini

Download or read book Omics and System Biology Approaches for Delivering Better Cereals written by Dinesh Kumar Saini and published by CRC Press. This book was released on 2024-11-08 with total page 612 pages. Available in PDF, EPUB and Kindle. Book excerpt: Cereals like wheat, rice, maize, and barley have long been the dominant crops in agriculture, providing a significant portion of our food supply. Plant breeders and geneticists have always been interested in improving the yield and quality of cereals. The primary challenges in cereal breeding lie in adapting to climate change and enhancing yield and stress tolerance. In recent years, omics approaches such as genomics, transcriptomics, proteomics, and metabolomics have emerged as valuable tools to understand the genetic and molecular basis of cereal development under optimum and stress conditions. However, studying individual datasets for different cereals has limited our comprehensive understanding of complex traits and biological networks. To overcome this limitation, a systems biology approach is necessary. Systems biology integrates multiple omics data, modeling, and cell activity prediction to gain a holistic understanding of biological processes. By considering the whole system and its interactions, rather than isolated components, researchers can develop predictive models and even re-engineer cells. In the context of cereal improvement, systems biology can play a crucial role in identifying and introducing desirable traits such as yield, quality, and stress tolerance. It may help researchers uncover the molecular underpinnings of complex traits and offer insights for enhancing cereals on a national and international scale. The book explores available omics resources, the integration of multi-omics data, and systems biology methods, focusing on their applications in cereals breeding and research. It highlights current and innovative strategies to understand complex traits, improve yield, and enhance resistance to biotic and abiotic stresses. It also addresses the challenges and opportunities associated with modeling multi-omics data and analyzing systems-level information. By leveraging systems biology and integrated omics research, this book aims to redefine the future research agenda for cereal improvement.

Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield

Author : Ganesh K. Agrawal
Publisher : Springer Science & Business Media
ISBN 13 : 9400747497
Total Pages : 592 pages
Book Rating : 4.4/5 (7 download)

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Book Synopsis Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield by : Ganesh K. Agrawal

Download or read book Seed Development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield written by Ganesh K. Agrawal and published by Springer Science & Business Media. This book was released on 2012-12-09 with total page 592 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book is about the seed development in the model and crop plants. Seed development is a key step of the plant life cycle that determines the nutrient value of seeds – the life for human civilization, growth, and development. The nutrient value of seeds is mainly due to storage reserve products such as carbohydrates, lipids (triacylglycerols), and proteins. The book primarily focuses on application of the 21st century high-throughput technologies transcriptomics, proteomics, metabolomics, and systems biology in near complete understanding of the various processes involved in seed development in different crop plants. The book reveals how such technologies have revolutionized our understanding of the multilayer processes and regulations involved therein by generating large-scale datasets. Accumulated datasets provide basic knowledge to develop integrated strategies to eventually improve the nutritional value of plant seed and crop yield, a critical goal in food security issues around the globe.

Plant Growth Regulators: Resilience for Sustainable Agriculture

Author : Mohammad Faizan
Publisher : Springer Nature
ISBN 13 : 9819729181
Total Pages : 294 pages
Book Rating : 4.8/5 (197 download)

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Book Synopsis Plant Growth Regulators: Resilience for Sustainable Agriculture by : Mohammad Faizan

Download or read book Plant Growth Regulators: Resilience for Sustainable Agriculture written by Mohammad Faizan and published by Springer Nature. This book was released on with total page 294 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Omics Analysis of Plants under Abiotic Stress

Author : Tariq Aftab
Publisher : CRC Press
ISBN 13 : 1000574733
Total Pages : 313 pages
Book Rating : 4.0/5 (5 download)

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Book Synopsis Omics Analysis of Plants under Abiotic Stress by : Tariq Aftab

Download or read book Omics Analysis of Plants under Abiotic Stress written by Tariq Aftab and published by CRC Press. This book was released on 2022-11-30 with total page 313 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new volume highlights the various emerging techniques and molecular applications that are currently being used in plant abiotic stress physiology. It provides a thorough overview of omics approaches in response to stressors such as low water accessibility (drought), excess water (flooding/waterlogging), extremes of temperatures (cold, chill, frost, and heat), salinity, mineral deficiency, and heavy metal toxicity-many of which are the result of climate change. The book, with chapters contributed by specialists in the field, emphasizes the broad variety of themes using an omics analysis of plants under abiotic stress factors at the cellular and molecular levels. The chapter authors explore a variety of approaches to address plant abiotic stress, including proteomic approaches, genome editing applications, and system biology approaches. The volume takes into consideration, from omics perspective, how to use the plant-microbe interaction to make plants more resilient to changing climates. It also looks at the role of ionomics (the study of complete mineral nutrient and trace elemental composition of a plant species) and osmoprotectants to address multiple abiotic stress tolerance in plants. Omics Analysis of Plants under Abiotic Stress provides the fundamental information for all who are working in or have interest in this specific field. Unquestionably, this volume will be beneficial for common use of research students, teachers, and persons who have interest in plant abiotic stress physiology.