Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics

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Publisher : MDPI
ISBN 13 : 3038429759
Total Pages : 295 pages
Book Rating : 4.0/5 (384 download)

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Book Synopsis Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics by : Hyun-Seob Song

Download or read book Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics written by Hyun-Seob Song and published by MDPI. This book was released on 2018-07-04 with total page 295 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a printed edition of the Special Issue "Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics" that was published in Processes

Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics

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Publisher :
ISBN 13 : 9783038429760
Total Pages : 1 pages
Book Rating : 4.4/5 (297 download)

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Book Synopsis Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics by : Hyun-Seob Song

Download or read book Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics written by Hyun-Seob Song and published by . This book was released on 2018 with total page 1 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics.

Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics

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Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (17 download)

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Book Synopsis Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics by : Hyun-Seob Song (Ed.)

Download or read book Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics written by Hyun-Seob Song (Ed.) and published by . This book was released on with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Systems-Level Modelling of Microbial Communities

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Publisher : CRC Press
ISBN 13 : 0429946066
Total Pages : 77 pages
Book Rating : 4.4/5 (299 download)

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Book Synopsis Systems-Level Modelling of Microbial Communities by : Aarthi Ravikrishnan

Download or read book Systems-Level Modelling of Microbial Communities written by Aarthi Ravikrishnan and published by CRC Press. This book was released on 2018-09-06 with total page 77 pages. Available in PDF, EPUB and Kindle. Book excerpt: Systems-Level Modelling of Microbial Communities: Theory and Practice introduces various aspects of modelling microbial communities and presents a detailed overview of the computational methods which have been developed in this area. This book is aimed at researchers in the field of computational/systems biology as well as biologists/experimentalists studying microbial communities, who are keen on embracing the concepts of computational modelling. The primary focus of this book is on methods for modelling interactions between micro-organisms in a community, with special emphasis on constraint-based and network-based modelling techniques. A brief overview of population- and agent-based modelling is also presented. Lastly, it covers the experimental methods to understand microbial communities, and provides an outlook on how the field may evolve in the coming years.

Modeling of Microbial Communities: Theory and Practice

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Publisher : Callisto Reference
ISBN 13 : 9781641167994
Total Pages : 0 pages
Book Rating : 4.1/5 (679 download)

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Book Synopsis Modeling of Microbial Communities: Theory and Practice by : Quinn White

Download or read book Modeling of Microbial Communities: Theory and Practice written by Quinn White and published by Callisto Reference. This book was released on 2023-09-26 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microbial communities are the groups of microorganisms that live together in a given environment. The microbial populations that make up these communities interact in a variety of ways, such as symbiosis, competition and predation. The diversity of microbial communities encompasses the abundance and quantity distribution of various kinds of organisms in a particular ecosystem. These communities consist of a wide range of biodiversity existing on the Earth. They play an important role in ecosystem functioning, including xenobiotic degradation, decomposition of organic matter and biogeochemical cycling of nutrients. Computational models of interacting microbes are used for understanding the functioning and dynamics of microbial communities. Modeling also plays an integral role in connecting biogeochemical processes to specific microbial metabolic pathways. This book unfolds the innovative aspects of microbial community modeling which will be crucial for the prediction of microbial interactions in the future. It aims to equip students and experts with the advanced topics and upcoming concepts in this area of study.

The Social Biology of Microbial Communities

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Publisher : National Academies Press
ISBN 13 : 0309264324
Total Pages : 633 pages
Book Rating : 4.3/5 (92 download)

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Book Synopsis The Social Biology of Microbial Communities by : Institute of Medicine

Download or read book The Social Biology of Microbial Communities written by Institute of Medicine and published by National Academies Press. This book was released on 2013-01-10 with total page 633 pages. Available in PDF, EPUB and Kindle. Book excerpt: Beginning with the germ theory of disease in the 19th century and extending through most of the 20th century, microbes were believed to live their lives as solitary, unicellular, disease-causing organisms . This perception stemmed from the focus of most investigators on organisms that could be grown in the laboratory as cellular monocultures, often dispersed in liquid, and under ambient conditions of temperature, lighting, and humidity. Most such inquiries were designed to identify microbial pathogens by satisfying Koch's postulates.3 This pathogen-centric approach to the study of microorganisms produced a metaphorical "war" against these microbial invaders waged with antibiotic therapies, while simultaneously obscuring the dynamic relationships that exist among and between host organisms and their associated microorganisms-only a tiny fraction of which act as pathogens. Despite their obvious importance, very little is actually known about the processes and factors that influence the assembly, function, and stability of microbial communities. Gaining this knowledge will require a seismic shift away from the study of individual microbes in isolation to inquiries into the nature of diverse and often complex microbial communities, the forces that shape them, and their relationships with other communities and organisms, including their multicellular hosts. On March 6 and 7, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats hosted a public workshop to explore the emerging science of the "social biology" of microbial communities. Workshop presentations and discussions embraced a wide spectrum of topics, experimental systems, and theoretical perspectives representative of the current, multifaceted exploration of the microbial frontier. Participants discussed ecological, evolutionary, and genetic factors contributing to the assembly, function, and stability of microbial communities; how microbial communities adapt and respond to environmental stimuli; theoretical and experimental approaches to advance this nascent field; and potential applications of knowledge gained from the study of microbial communities for the improvement of human, animal, plant, and ecosystem health and toward a deeper understanding of microbial diversity and evolution. The Social Biology of Microbial Communities: Workshop Summary further explains the happenings of the workshop.

Biogeochemical Cycles

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Publisher : John Wiley & Sons
ISBN 13 : 1119413303
Total Pages : 336 pages
Book Rating : 4.1/5 (194 download)

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Book Synopsis Biogeochemical Cycles by : Katerina Dontsova

Download or read book Biogeochemical Cycles written by Katerina Dontsova and published by John Wiley & Sons. This book was released on 2020-04-14 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: Elements move through Earth's critical zone along interconnected pathways that are strongly influenced by fluctuations in water and energy. The biogeochemical cycling of elements is inextricably linked to changes in climate and ecological disturbances, both natural and man-made. Biogeochemical Cycles: Ecological Drivers and Environmental Impact examines the influences and effects of biogeochemical elemental cycles in different ecosystems in the critical zone. Volume highlights include: Impact of global change on the biogeochemical functioning of diverse ecosystems Biological drivers of soil, rock, and mineral weathering Natural elemental sources for improving sustainability of ecosystems Links between natural ecosystems and managed agricultural systems Non-carbon elemental cycles affected by climate change Subsystems particularly vulnerable to global change The American Geophysical Union promotes discovery in Earth and space science for the benefit of humanity. Its publications disseminate scientific knowledge and provide resources for researchers, students, and professionals. Book Review: http://www.elementsmagazine.org/archives/e16_6/e16_6_dep_bookreview.pdf

Self-Organization in Complex Ecosystems. (MPB-42)

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Publisher : Princeton University Press
ISBN 13 : 140084293X
Total Pages : 384 pages
Book Rating : 4.4/5 (8 download)

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Book Synopsis Self-Organization in Complex Ecosystems. (MPB-42) by : Ricard Solé

Download or read book Self-Organization in Complex Ecosystems. (MPB-42) written by Ricard Solé and published by Princeton University Press. This book was released on 2012-01-06 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt: Can physics be an appropriate framework for the understanding of ecological science? Most ecologists would probably agree that there is little relation between the complexity of natural ecosystems and the simplicity of any example derived from Newtonian physics. Though ecologists have long been interested in concepts originally developed by statistical physicists and later applied to explain everything from why stock markets crash to why rivers develop particular branching patterns, applying such concepts to ecosystems has remained a challenge. Self-Organization in Complex Ecosystems is the first book to clearly synthesize what we have learned about the usefulness of tools from statistical physics in ecology. Ricard Solé and Jordi Bascompte provide a comprehensive introduction to complex systems theory, and ask: do universal laws shape the structure of ecosystems, at least at some scales? They offer the most compelling array of theoretical evidence to date of the potential of nonlinear ecological interactions to generate nonrandom, self-organized patterns at all levels. Tackling classic ecological questions--from population dynamics to biodiversity to macroevolution--the book's novel presentation of theories and data shows the power of statistical physics and complexity in ecology. Self-Organization in Complex Ecosystems will be a staple resource for years to come for ecologists interested in complex systems theory as well as mathematicians and physicists interested in ecology.

Microbial Community Analysis

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Publisher : IWA Publishing
ISBN 13 : 9781900222020
Total Pages : 108 pages
Book Rating : 4.2/5 (22 download)

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Book Synopsis Microbial Community Analysis by : Thomas E. Cloete

Download or read book Microbial Community Analysis written by Thomas E. Cloete and published by IWA Publishing. This book was released on 1997-01-01 with total page 108 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microbial Community Analysis surveys the vast amount of theoretical and practical knowledge on the design of biological treatment systems. It describes the different types of biological wastewater systems, the role of microbial diversity in these systems, and how this affects design and operation, methods for studying microbial community dynamics, and mathematical modelling of these systems. Contents Biological methods for the treatment of wastewaters Biodiversity and microbial interactions in the biodegradation of organic compounds Microbial population dynamics in biological wastewater treatment plants Molecular techniques for determining microbial community structures in activated sludge Principles in the modelling of biological wastewater treatment plants Practical considerations for the design of biological wastewater treatment systems Scientific and Technical Report No.5

Systems Biology

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Publisher : Cambridge University Press
ISBN 13 : 1107038855
Total Pages : 551 pages
Book Rating : 4.1/5 (7 download)

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Book Synopsis Systems Biology by : Bernhard Palsson

Download or read book Systems Biology written by Bernhard Palsson and published by Cambridge University Press. This book was released on 2015-01-26 with total page 551 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive single-authored textbook on genome-scale models and the bottom-up approach to systems biology.

Predictive Modeling of Human Microbiota and their Role in Health and Disease

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Publisher : Frontiers Media SA
ISBN 13 : 2889740919
Total Pages : 145 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis Predictive Modeling of Human Microbiota and their Role in Health and Disease by : Hyun-Seob Song

Download or read book Predictive Modeling of Human Microbiota and their Role in Health and Disease written by Hyun-Seob Song and published by Frontiers Media SA. This book was released on 2022-01-19 with total page 145 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Manual of Industrial Microbiology and Biotechnology

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Publisher :
ISBN 13 :
Total Pages : 854 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Manual of Industrial Microbiology and Biotechnology by : Arnold L. Demain

Download or read book Manual of Industrial Microbiology and Biotechnology written by Arnold L. Demain and published by . This book was released on 1999 with total page 854 pages. Available in PDF, EPUB and Kindle. Book excerpt: The editors have enlisted a broad range of experts, including microbial ecologists, physiologists, geneticists, biochemists, molecular biologists, and biochemical engineers, who offer practical experience not found in texts and journals. This comprehensive perspective makes MIMB a valuable "how to" resource, the structure of which resembles the sequence of operation involved in the development of a commercial biological process and product.

Systems biology and ecology of microbial mat communities

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Publisher : Frontiers Media SA
ISBN 13 : 288919793X
Total Pages : 264 pages
Book Rating : 4.8/5 (891 download)

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Book Synopsis Systems biology and ecology of microbial mat communities by : Martin G. Klotz

Download or read book Systems biology and ecology of microbial mat communities written by Martin G. Klotz and published by Frontiers Media SA. This book was released on 2016-04-11 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microbial mat communities consist of dense populations of microorganisms embedded in exopolymers and/or biomineralized solid phases, and are often found in mm-cm thick assemblages, which can be stratified due to environmental gradients such as light, oxygen or sulfide. Microbial mat communities are commonly observed under extreme environmental conditions, deriving energy primarily from light and/or reduced chemicals to drive autotrophic fixation of carbon dioxide. Microbial mat ecosystems are regarded as living analogues of primordial systems on Earth, and they often form perennial structures with conspicuous stratifications of microbial populations that can be studied in situ under stable conditions for many years. Consequently, microbial mat communities are ideal natural laboratories and represent excellent model systems for studying microbial community structure and function, microbial dynamics and interactions, and discovery of new microorganisms with novel metabolic pathways potentially useful in future industrial and/or medical applications. Due to their relative simplicity and organization, microbial mat communities are often excellent testing grounds for new technologies in microbiology including micro-sensor analysis, stable isotope methodology and modern genomics. Integrative studies of microbial mat communities that combine modern biogeochemical and molecular biological methods with traditional microbiology, macro-ecological approaches, and community network modeling will provide new and detailed insights regarding the systems biology of microbial mats and the complex interplay among individual populations and their physicochemical environment. These processes ultimately control the biogeochemical cycling of energy and/or nutrients in microbial systems. Similarities in microbial community function across different types of communities from highly disparate environments may provide a deeper basis for understanding microbial community dynamics and the ecological role of specific microbial populations. Approaches and concepts developed in highly-constrained, relatively stable natural communities may also provide insights useful for studying and understanding more complex microbial communities.

Aquatic Microbial Communities

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Publisher :
ISBN 13 :
Total Pages : 720 pages
Book Rating : 4.:/5 (318 download)

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Book Synopsis Aquatic Microbial Communities by : John Cairns

Download or read book Aquatic Microbial Communities written by John Cairns and published by . This book was released on 1977 with total page 720 pages. Available in PDF, EPUB and Kindle. Book excerpt:

The Spatial Distribution of Microbes in the Environment

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Publisher : Springer Science & Business Media
ISBN 13 : 1402062168
Total Pages : 339 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis The Spatial Distribution of Microbes in the Environment by : Rima Franklin

Download or read book The Spatial Distribution of Microbes in the Environment written by Rima Franklin and published by Springer Science & Business Media. This book was released on 2007-09-04 with total page 339 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume highlights recent advances that have contributed to our understanding of spatial patterns and scale issues in microbial ecology. The book brings together research conducted at a range of spatial scales (from μm to km) and in a variety of different types of environments. These topics are addressed in a quantitative manner, and a primer on statistical methods is included. In soil ecosystems, both bacteria and fungi are discussed.

Methods for Modeling the Dynamics of Microbial Communities

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Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (125 download)

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Book Synopsis Methods for Modeling the Dynamics of Microbial Communities by : Tyler Joseph

Download or read book Methods for Modeling the Dynamics of Microbial Communities written by Tyler Joseph and published by . This book was released on 2021 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in DNA sequencing of microbial communities have revealed a complex relationship between the human microbiome and our health. Community dynamics, host-microbe interactions, and changing environmental pressures create a dynamic ecosystem that is just beginning to be understood. In this work, we develop methods for investigating the dynamics of the microbiome. First, we develop a model for describing community dynamics. We show that the proposed approaches accurately describes community trajectories over time. Next, we develop a method for modeling and eliminating technical noise from longitudinal data. We demonstrate that the method can accurately reconstruct microbial trajectories from noisy data. Finally, we develop a method for estimating bacterial growth rates from metagenomic sequencing. Using a case-control cohort of individuals with irritable bowel disease, we show how growth rates can be associated with disease status, community states, and metabolites. Altogether, these models can be used to help uncover the relationship between microbial dynamics, human health, and disease.

Microbiomes of the Built Environment

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Publisher : National Academies Press
ISBN 13 : 0309449839
Total Pages : 318 pages
Book Rating : 4.3/5 (94 download)

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Book Synopsis Microbiomes of the Built Environment by : National Academies of Sciences, Engineering, and Medicine

Download or read book Microbiomes of the Built Environment written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2017-10-06 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: People's desire to understand the environments in which they live is a natural one. People spend most of their time in spaces and structures designed, built, and managed by humans, and it is estimated that people in developed countries now spend 90 percent of their lives indoors. As people move from homes to workplaces, traveling in cars and on transit systems, microorganisms are continually with and around them. The human-associated microbes that are shed, along with the human behaviors that affect their transport and removal, make significant contributions to the diversity of the indoor microbiome. The characteristics of "healthy" indoor environments cannot yet be defined, nor do microbial, clinical, and building researchers yet understand how to modify features of indoor environmentsâ€"such as building ventilation systems and the chemistry of building materialsâ€"in ways that would have predictable impacts on microbial communities to promote health and prevent disease. The factors that affect the environments within buildings, the ways in which building characteristics influence the composition and function of indoor microbial communities, and the ways in which these microbial communities relate to human health and well-being are extraordinarily complex and can be explored only as a dynamic, interconnected ecosystem by engaging the fields of microbial biology and ecology, chemistry, building science, and human physiology. This report reviews what is known about the intersection of these disciplines, and how new tools may facilitate advances in understanding the ecosystem of built environments, indoor microbiomes, and effects on human health and well-being. It offers a research agenda to generate the information needed so that stakeholders with an interest in understanding the impacts of built environments will be able to make more informed decisions.