Methods and Tools for Bioimage Analysis

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Publisher : Frontiers Media SA
ISBN 13 : 2889764060
Total Pages : 147 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis Methods and Tools for Bioimage Analysis by : Florian Levet

Download or read book Methods and Tools for Bioimage Analysis written by Florian Levet and published by Frontiers Media SA. This book was released on 2022-06-23 with total page 147 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Bioimage Data Analysis Workflows

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Publisher : Springer Nature
ISBN 13 : 3030223868
Total Pages : 178 pages
Book Rating : 4.0/5 (32 download)

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Book Synopsis Bioimage Data Analysis Workflows by : Kota Miura

Download or read book Bioimage Data Analysis Workflows written by Kota Miura and published by Springer Nature. This book was released on 2019-10-17 with total page 178 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Open Access textbook provides students and researchers in the life sciences with essential practical information on how to quantitatively analyze data images. It refrains from focusing on theory, and instead uses practical examples and step-by step protocols to familiarize readers with the most commonly used image processing and analysis platforms such as ImageJ, MatLab and Python. Besides gaining knowhow on algorithm usage, readers will learn how to create an analysis pipeline by scripting language; these skills are important in order to document reproducible image analysis workflows. The textbook is chiefly intended for advanced undergraduates in the life sciences and biomedicine without a theoretical background in data analysis, as well as for postdocs, staff scientists and faculty members who need to perform regular quantitative analyses of microscopy images.

Computational Methods and Tools for Reproducible and Scalable Bioimage Analysis

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Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (13 download)

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Book Synopsis Computational Methods and Tools for Reproducible and Scalable Bioimage Analysis by : Markus Daniel Herrmann

Download or read book Computational Methods and Tools for Reproducible and Scalable Bioimage Analysis written by Markus Daniel Herrmann and published by . This book was released on 2017 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Bioimage Data Analysis Workflows ‒ Advanced Components and Methods

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Publisher : Springer Nature
ISBN 13 : 3030763943
Total Pages : 218 pages
Book Rating : 4.0/5 (37 download)

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Book Synopsis Bioimage Data Analysis Workflows ‒ Advanced Components and Methods by : Kota Miura

Download or read book Bioimage Data Analysis Workflows ‒ Advanced Components and Methods written by Kota Miura and published by Springer Nature. This book was released on 2022-09-28 with total page 218 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access textbook aims at providing detailed explanations on how to design and construct image analysis workflows to successfully conduct bioimage analysis. Addressing the main challenges in image data analysis, where acquisition by powerful imaging devices results in very large amounts of collected image data, the book discusses techniques relying on batch and GPU programming, as well as on powerful deep learning-based algorithms. In addition, downstream data processing techniques are introduced, such as Python libraries for data organization, plotting, and visualizations. Finally, by studying the way individual unique ideas are implemented in the workflows, readers are carefully guided through how the parameters driving biological systems are revealed by analyzing image data. These studies include segmentation of plant tissue epidermis, analysis of the spatial pattern of the eye development in fruit flies, and the analysis of collective cell migration dynamics. The presented content extends the Bioimage Data Analysis Workflows textbook (Miura, Sladoje, 2020), published in this same series, with new contributions and advanced material, while preserving the well-appreciated pedagogical approach adopted and promoted during the training schools for bioimage analysis organized within NEUBIAS – the Network of European Bioimage Analysts. This textbook is intended for advanced students in various fields of the life sciences and biomedicine, as well as staff scientists and faculty members who conduct regular quantitative analyses of microscopy images.

Image Analysis in Biology

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Publisher : CRC Press
ISBN 13 :
Total Pages : 392 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Image Analysis in Biology by : Donat P. Hader

Download or read book Image Analysis in Biology written by Donat P. Hader and published by CRC Press. This book was released on 1992 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: Methods of image analysis. Microscopy and ultramicroscopy. Movement analysis.

Standard and Super-Resolution Bioimaging Data Analysis

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Publisher : John Wiley & Sons
ISBN 13 : 1119096901
Total Pages : 307 pages
Book Rating : 4.1/5 (19 download)

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Book Synopsis Standard and Super-Resolution Bioimaging Data Analysis by : Ann Wheeler

Download or read book Standard and Super-Resolution Bioimaging Data Analysis written by Ann Wheeler and published by John Wiley & Sons. This book was released on 2017-12-26 with total page 307 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive guide to the art and science of bioimaging data acquisition, processing and analysis Standard and Super-Resolution Bioimaging Data Analysis gets newcomers to bioimage data analysis quickly up to speed on the mathematics, statistics, computing hardware and acquisition technologies required to correctly process and document data. The past quarter century has seen remarkable progress in the field of light microscopy for biomedical science, with new imaging technologies coming on the market at an almost annual basis. Most of the data generated by these systems is image-based, and there is a significant increase in the content and throughput of these imaging systems. This, in turn, has resulted in a shift in the literature on biomedical research from descriptive to highly-quantitative. Standard and Super-Resolution Bioimaging Data Analysis satisfies the demand among students and research scientists for introductory guides to the tools for parsing and processing image data. Extremely well illustrated and including numerous examples, it clearly and accessibly explains what image data is and how to process and document it, as well as the current resources and standards in the field. A comprehensive guide to the tools for parsing and processing image data and the resources and industry standards for the biological and biomedical sciences Takes a practical approach to image analysis to assist scientists in ensuring scientific data are robust and reliable Covers fundamental principles in such a way as to give beginners a sound scientific base upon which to build Ideally suited for advanced students having only limited knowledge of the mathematics, statistics and computing required for image data analysis An entry-level text written for students and practitioners in the bioscience community, Standard and Super-Resolution Bioimaging Data Analysis de-mythologises the vast array of image analysis modalities which have come online over the past decade while schooling beginners in bioimaging principles, mathematics, technologies and standards.

Digital Pathology

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Publisher : Springer
ISBN 13 : 3030239373
Total Pages : 192 pages
Book Rating : 4.0/5 (32 download)

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Book Synopsis Digital Pathology by : Constantino Carlos Reyes-Aldasoro

Download or read book Digital Pathology written by Constantino Carlos Reyes-Aldasoro and published by Springer. This book was released on 2019-07-03 with total page 192 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 15th European Congress on Digital Pathology, ECDP 2019, held in Warwick, UK in April 2019. The 21 full papers presented in this volume were carefully reviewed and selected from 30 submissions. The congress theme will be Accelerating Clinical Deployment, with a focus on computational pathology and leveraging the power of big data and artificial intelligence to bridge the gaps between research, development, and clinical uptake.

Computer Optimized Microscopy

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Publisher :
ISBN 13 : 9781493996865
Total Pages : 467 pages
Book Rating : 4.9/5 (968 download)

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Book Synopsis Computer Optimized Microscopy by : Elena Rebollo

Download or read book Computer Optimized Microscopy written by Elena Rebollo and published by . This book was released on 2019 with total page 467 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume explores open-source based image analysis techniques to provide a state-of-the-art collection of workflows covering current bioimage analysis problematics, including colocalization, particle counting, 3D structural analysis, ratio imaging and FRET quantification, particle tracking, high-content screening or machine learning. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and scripts, step-by-step, readily reproducible image analysis protocols, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and cutting-edge, Computer Optimized Microscopy: Methods and Protocols is a valuable resource for both novice and experienced researchers who are interested in learning more about this developing field. .

Biomedical Data Mining for Information Retrieval

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Publisher : John Wiley & Sons
ISBN 13 : 111971124X
Total Pages : 450 pages
Book Rating : 4.1/5 (197 download)

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Book Synopsis Biomedical Data Mining for Information Retrieval by : Sujata Dash

Download or read book Biomedical Data Mining for Information Retrieval written by Sujata Dash and published by John Wiley & Sons. This book was released on 2021-08-24 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: BIOMEDICAL DATA MINING FOR INFORMATION RETRIEVAL This book not only emphasizes traditional computational techniques, but discusses data mining, biomedical image processing, information retrieval with broad coverage of basic scientific applications. Biomedical Data Mining for Information Retrieval comprehensively covers the topic of mining biomedical text, images and visual features towards information retrieval. Biomedical and health informatics is an emerging field of research at the intersection of information science, computer science, and healthcare and brings tremendous opportunities and challenges due to easily available and abundant biomedical data for further analysis. The aim of healthcare informatics is to ensure the high-quality, efficient healthcare, better treatment and quality of life by analyzing biomedical and healthcare data including patient’s data, electronic health records (EHRs) and lifestyle. Previously, it was a common requirement to have a domain expert to develop a model for biomedical or healthcare; however, recent advancements in representation learning algorithms allows us to automatically to develop the model. Biomedical image mining, a novel research area, due to the vast amount of available biomedical images, increasingly generates and stores digitally. These images are mainly in the form of computed tomography (CT), X-ray, nuclear medicine imaging (PET, SPECT), magnetic resonance imaging (MRI) and ultrasound. Patients’ biomedical images can be digitized using data mining techniques and may help in answering several important and critical questions relating to healthcare. Image mining in medicine can help to uncover new relationships between data and reveal new useful information that can be helpful for doctors in treating their patients. Audience Researchers in various fields including computer science, medical informatics, healthcare IOT, artificial intelligence, machine learning, image processing, clinical big data analytics.

Focus on Bio-Image Informatics

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Publisher : Springer
ISBN 13 : 3319285491
Total Pages : 277 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Focus on Bio-Image Informatics by : Winnok H. De Vos

Download or read book Focus on Bio-Image Informatics written by Winnok H. De Vos and published by Springer. This book was released on 2016-05-20 with total page 277 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume of Advances Anatomy Embryology and Cell Biology focuses on the emerging field of bio-image informatics, presenting novel and exciting ways of handling and interpreting large image data sets. A collection of focused reviews written by key players in the field highlights the major directions and provides an excellent reference work for both young and experienced researchers.

Frontiers In Bioimage Informatics Methodology

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Publisher : World Scientific
ISBN 13 : 9811286140
Total Pages : 374 pages
Book Rating : 4.8/5 (112 download)

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Book Synopsis Frontiers In Bioimage Informatics Methodology by : Jie Zhou

Download or read book Frontiers In Bioimage Informatics Methodology written by Jie Zhou and published by World Scientific. This book was released on 2024-03-19 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique compendium provides state-of-the-art computational methodology and applications in bioimage informatics. It covers cutting-edge technology developments in biological image analysis, where images come from new modalities and are often large scale, high throughput and high dimensional. The book reflects advances in intelligent algorithms for tasks such as biological image segmentation, reconstruction, and object tracking.Contributed by world renowned researchers, this useful reference text presents case studies that can potentially help readers find approaches and resources to address their imminent scientific problems.

Bio-Imaging

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Publisher : CRC Press
ISBN 13 : 1466593687
Total Pages : 399 pages
Book Rating : 4.4/5 (665 download)

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Book Synopsis Bio-Imaging by : Rajagopal Vadivambal

Download or read book Bio-Imaging written by Rajagopal Vadivambal and published by CRC Press. This book was released on 2015-08-27 with total page 399 pages. Available in PDF, EPUB and Kindle. Book excerpt: Highlights the Emergence of Image Processing in Food and AgricultureIn addition to uses specifically related to health and other industries, biological imaging is now being used for a variety of applications in food and agriculture. Bio-Imaging: Principles, Techniques, and Applications fully details and outlines the processes of bio-imaging applica

Computational Systems Bioinformatics - Methods And Biomedical Applications

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Publisher : World Scientific Publishing Company
ISBN 13 : 9813106999
Total Pages : 400 pages
Book Rating : 4.8/5 (131 download)

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Book Synopsis Computational Systems Bioinformatics - Methods And Biomedical Applications by : Wong Stephen Tin Chi

Download or read book Computational Systems Bioinformatics - Methods And Biomedical Applications written by Wong Stephen Tin Chi and published by World Scientific Publishing Company. This book was released on 2008-01-02 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational systems biology is a new and rapidly developing field of research, concerned with understanding the structure and processes of biological systems at the molecular, cellular, tissue, and organ levels through computational modeling as well as novel information theoretic data and image analysis methods. By focusing on either information processing of biological data or on modeling physical and chemical processes of biosystems, and in combination with the recent breakthrough in deciphering the human genome, computational systems biology is guaranteed to play a central role in disease prediction and preventive medicine, gene technology and pharmaceuticals, and other biotechnology fields.This book begins by introducing the basic mathematical, statistical, and data mining principles of computational systems biology, and then presents bioinformatics technology in microarray and sequence analysis step-by-step. Offering an insightful look into the effectiveness of the systems approach in computational biology, it focuses on recurrent themes in bioinformatics, biomedical applications, and future directions for research.

Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015

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Publisher : Springer
ISBN 13 : 3319245740
Total Pages : 801 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 by : Nassir Navab

Download or read book Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 written by Nassir Navab and published by Springer. This book was released on 2015-09-28 with total page 801 pages. Available in PDF, EPUB and Kindle. Book excerpt: The three-volume set LNCS 9349, 9350, and 9351 constitutes the refereed proceedings of the 18th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2015, held in Munich, Germany, in October 2015. Based on rigorous peer reviews, the program committee carefully selected 263 revised papers from 810 submissions for presentation in three volumes. The papers have been organized in the following topical sections: quantitative image analysis I: segmentation and measurement; computer-aided diagnosis: machine learning; computer-aided diagnosis: automation; quantitative image analysis II: classification, detection, features, and morphology; advanced MRI: diffusion, fMRI, DCE; quantitative image analysis III: motion, deformation, development and degeneration; quantitative image analysis IV: microscopy, fluorescence and histological imagery; registration: method and advanced applications; reconstruction, image formation, advanced acquisition - computational imaging; modelling and simulation for diagnosis and interventional planning; computer-assisted and image-guided interventions.

Handbook of AI-Based Models in Healthcare and Medicine

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Publisher : CRC Press
ISBN 13 : 1003836275
Total Pages : 477 pages
Book Rating : 4.0/5 (38 download)

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Book Synopsis Handbook of AI-Based Models in Healthcare and Medicine by : Bhanu Chander

Download or read book Handbook of AI-Based Models in Healthcare and Medicine written by Bhanu Chander and published by CRC Press. This book was released on 2024-02-21 with total page 477 pages. Available in PDF, EPUB and Kindle. Book excerpt: This handbook provides thorough, in-depth, and well-focused developments of artificial intelligence (AI), machine learning (ML), deep learning (DL), natural language processing (NLP), cryptography, and blockchain approaches, along with their applications focused on healthcare systems. Handbook of AI-Based Models in Healthcare and Medicine: Approaches, Theories, and Applications highlights different approaches, theories, and applications of intelligent systems from a practical as well as a theoretical view of the healthcare domain. It uses a medically oriented approach in its discussions of human biology, healthcare, and medicine and presents NLP-based medical reports and medicine enhancements. The handbook includes advanced models of ML and DL for the management of healthcare systems and also discusses blockchain-based healthcare management. In addition, the handbook offers use cases where AI, ML, and DL can help solve healthcare complications. Undergraduate and postgraduate students, academicians, researchers, and industry professionals who have an interest in understanding the applications of ML/DL in the healthcare setting will want this reference on their bookshelf.

Unraveling New Frontiers and Advances in Bioinformatics

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Publisher : Springer Nature
ISBN 13 : 9819771234
Total Pages : 440 pages
Book Rating : 4.8/5 (197 download)

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Book Synopsis Unraveling New Frontiers and Advances in Bioinformatics by : Amit Chaudhary

Download or read book Unraveling New Frontiers and Advances in Bioinformatics written by Amit Chaudhary and published by Springer Nature. This book was released on with total page 440 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Image Analysis

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Publisher : CRC Press
ISBN 13 : 9780849302398
Total Pages : 488 pages
Book Rating : 4.3/5 (23 download)

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Book Synopsis Image Analysis by : Donat P. Hader

Download or read book Image Analysis written by Donat P. Hader and published by CRC Press. This book was released on 2000-08-23 with total page 488 pages. Available in PDF, EPUB and Kindle. Book excerpt: Automatic image analysis has become an important tool in many fields of biology, medicine, and other sciences. Since the first edition of Image Analysis: Methods and Applications, the development of both software and hardware technology has undergone quantum leaps. For example, specific mathematical filters have been developed for quality enhancement of original images and for extraction of specific features of interest. Also, more complex programs have been developed for the analysis of object forms in distinguishing cancer cells from normal tissue cells. Just as significant, three-dimensional analysis of proteins, organelles, or macroscopic objects is even more complex. In addition, recent space-based experiments have optimized techniques for the extraction of movement parameters of numerous motile objects. The second edition of Image Analysis: Methods and Applications addresses all these new developments. Moreover, two new chapters have been added. One focuses on images on the internet, and the other discusses microscope image restoration. These chapters add significantly to the existing body of information on Internet communication protocol and environment as well as to that on image file formats considerations. The materials also include a list of internet Web sites that pertain to digital images and software along with those that relate to image processing. With these considerations in mind, Image Analysis: Methods and Application, Second Edition is of incalculable value to professionals, academics, and users of all aspects of image analysis in biology and other areas of science.