Leveraging High Throughput Datasets For Studies Of Gene Regulation

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Effective Techniques for Bioinformatic Exploration

Author : Fazendeiro, Paulo
Publisher : IGI Global
ISBN 13 :
Total Pages : 374 pages
Book Rating : 4.3/5 (693 download)

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Book Synopsis Effective Techniques for Bioinformatic Exploration by : Fazendeiro, Paulo

Download or read book Effective Techniques for Bioinformatic Exploration written by Fazendeiro, Paulo and published by IGI Global. This book was released on 2024-11-01 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: The field of biology and technology is constantly changing and growing. However, the abundance and intricacy of biological data present significant challenges for researchers, educators, and students. Deciphering this vast sea of information to extract meaningful insights can be difficult. Traditional approaches often fail to provide comprehensive solutions to these intricate problems, leaving many struggling to navigate the complexities of bioinformatics. Effective Techniques for Bioinformatic Exploration brings new clarity to the world of bioinformatics, offering a comprehensive solution to the challenges scholars face. Through its meticulously crafted chapters, this book provides a structured approach to understanding and applying bioinformatics principles. Bridging the gap between theory and practice equips readers with the tools needed to tackle complex biological problems effectively. Whether delving into genomics, proteomics, or machine learning models, this book offers a roadmap for success. This book empowers readers to overcome challenges and make meaningful contributions to the field by embracing the scientific method and showcasing the practical application of bioinformatics techniques.

Leveraging Biomedical and Healthcare Data

Author : Firas Kobeissy
Publisher : Academic Press
ISBN 13 : 012809561X
Total Pages : 228 pages
Book Rating : 4.1/5 (28 download)

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Book Synopsis Leveraging Biomedical and Healthcare Data by : Firas Kobeissy

Download or read book Leveraging Biomedical and Healthcare Data written by Firas Kobeissy and published by Academic Press. This book was released on 2018-11-23 with total page 228 pages. Available in PDF, EPUB and Kindle. Book excerpt: Leveraging Biomedical and Healthcare Data: Semantics, Analytics and Knowledge provides an overview of the approaches used in semantic systems biology, introduces novel areas of its application, and describes step-wise protocols for transforming heterogeneous data into useful knowledge that can influence healthcare and biomedical research. Given the astronomical increase in the number of published reports, papers, and datasets over the last few decades, the ability to curate this data has become a new field of biomedical and healthcare research. This book discusses big data text-based mining to better understand the molecular architecture of diseases and to guide health care decision. It will be a valuable resource for bioinformaticians and members of several areas of the biomedical field who are interested in understanding more about how to process and apply great amounts of data to improve their research. Includes at each section resource pages containing a list of available curated raw and processed data that can be used by researchers in the field Provides demonstrative and relevant examples that serve as a general tutorial Presents a list of algorithm names and computational tools available for basic and clinical researchers

Revolutions in Human Biospecimen Study: Leveraging new technologies to explore the pathology, therapeutics and biomarkers for atherosclerotic disease

Download Revolutions in Human Biospecimen Study: Leveraging new technologies to explore the pathology, therapeutics and biomarkers for atherosclerotic disease PDF Online Free

Author : Ying Wang
Publisher : Frontiers Media SA
ISBN 13 : 2832539351
Total Pages : 141 pages
Book Rating : 4.8/5 (325 download)

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Book Synopsis Revolutions in Human Biospecimen Study: Leveraging new technologies to explore the pathology, therapeutics and biomarkers for atherosclerotic disease by : Ying Wang

Download or read book Revolutions in Human Biospecimen Study: Leveraging new technologies to explore the pathology, therapeutics and biomarkers for atherosclerotic disease written by Ying Wang and published by Frontiers Media SA. This book was released on 2023-11-20 with total page 141 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the last few years, new high-throughput biotechnologies are revolutionizing our ways to utilize human biospecimens for understanding atherosclerotic disease. These recent advances allow deep profiling of individual cells at the genomics, epigenomics, transcriptomics and proteomics levels, or even simultaneous detection of various combinations of ‘Omics’ in the same cell. Additionally, novel methods to integrate data at different levels from tissue sections and dissociated tissues are the emerging trends in large and institutional biobank studies. Growing literature has shown the value of such sequencing and bioinformatic strategies in shedding light on (1) how risk genes, as identified by the Genome-Wide Association Study, contribute to atherogenesis (genotype to phenotype), and (2) how features of atherosclerotic lesions affect patient response in clinical trials (phenotype to the clinical outcome). The hybrid of cutting-edge biotechnologies and bioinformatic approaches helps us maximize biobank resources to accelerate bench-to-bedside research.

Long Non Coding RNA Biology

Author : M.R.S. Rao
Publisher : Springer
ISBN 13 : 9811052034
Total Pages : 336 pages
Book Rating : 4.8/5 (11 download)

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Book Synopsis Long Non Coding RNA Biology by : M.R.S. Rao

Download or read book Long Non Coding RNA Biology written by M.R.S. Rao and published by Springer. This book was released on 2017-08-16 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: This contributed volume offers a comprehensive and detailed overview of the various aspects of long non-coding RNAs and discusses their emerging significance. Written by leading experts in the field, it motivates young researchers around the globe, and offers graduate and postgraduate students fascinating insights into genes and their regulation in eukaryotes and higher organisms.

Blossoming Expertise: Mastering the Art of Botany

Author : Dominic Front
Publisher : Richards Education
ISBN 13 :
Total Pages : 191 pages
Book Rating : 4./5 ( download)

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Book Synopsis Blossoming Expertise: Mastering the Art of Botany by : Dominic Front

Download or read book Blossoming Expertise: Mastering the Art of Botany written by Dominic Front and published by Richards Education. This book was released on with total page 191 pages. Available in PDF, EPUB and Kindle. Book excerpt: Embark on a botanical journey like no other with "Blossoming Expertise: Mastering the Art of Botany." This comprehensive guide invites readers into the captivating world of plants, offering a rich tapestry of knowledge spanning ten chapters. From the fundamental principles of botany to advanced research techniques, each chapter explores a diverse array of topics, including plant structure and function, ecology, biogeography, ethnobotany, and cutting-edge botanical research. Delve into the cultural significance of plants, uncover traditional knowledge systems, and learn about the latest advances shaping the field. With over 100 sections packed with fascinating insights, practical applications, and captivating illustrations, this book is an indispensable resource for botany enthusiasts, students, educators, and professionals alike. Whether you're a budding botanist or a seasoned researcher, "Blossoming Expertise" will inspire you to cultivate a deeper understanding of the plant kingdom and its myriad wonders.

Systems Biology and Livestock Science

Author : Marinus te Pas
Publisher : John Wiley & Sons
ISBN 13 : 0470962968
Total Pages : 340 pages
Book Rating : 4.4/5 (79 download)

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Book Synopsis Systems Biology and Livestock Science by : Marinus te Pas

Download or read book Systems Biology and Livestock Science written by Marinus te Pas and published by John Wiley & Sons. This book was released on 2011-09-23 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt: Systems Biology is an interdisciplinary approach to the study of life made possible through the explosion of molecular data made available through the genome revolution and the simultaneous development of computational technologies that allow us to interpret these large data sets. Systems Biology has changed the way biological science views and studies life and has been implemented in research efforts across the biological sciences. Systems Biology and Livestock Science will be the first book to review the latest advances using this research methodology in efforts to improve the efficiency, health, and quality of livestock production. Systems Biology and Livestock Science opens with useful introductory chapters explaining key systems biology principles. The chapters then progress to look at specific advances in fields across livestock science. Coverage includes, but is not limited to, chapters on systems biology approaches to animal nutrition, reproduction, health and disease, and animal physiology. Written by leading researchers in the field, Systems Biology and Livestock Science, will be an invaluable resource to researchers, professionals, and advance students working in this rapidly developing discipline.

Gene Expression Analysis

Author : Nalini Raghavachari
Publisher : Humana
ISBN 13 : 9781493978335
Total Pages : 0 pages
Book Rating : 4.9/5 (783 download)

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Book Synopsis Gene Expression Analysis by : Nalini Raghavachari

Download or read book Gene Expression Analysis written by Nalini Raghavachari and published by Humana. This book was released on 2018-05-17 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides experimental and bioinformatics approaches related to different aspects of gene expression analysis. Divided in three sections chapters detail wet-lab protocols, bioinformatics approaches, single-cell gene expression, highly multiplexed amplicon sequencing, multi-omics techniques, and targeted sequencing. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Gene Expression Analysis: Methods and Protocols aims provide useful information to researchers worldwide.

Machine Learning and Knowledge Discovery in Databases

Author : Wray Buntine
Publisher : Springer Science & Business Media
ISBN 13 : 3642041736
Total Pages : 787 pages
Book Rating : 4.6/5 (42 download)

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Book Synopsis Machine Learning and Knowledge Discovery in Databases by : Wray Buntine

Download or read book Machine Learning and Knowledge Discovery in Databases written by Wray Buntine and published by Springer Science & Business Media. This book was released on 2009-09-03 with total page 787 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the joint conference on Machine Learning and Knowledge Discovery in Databases: ECML PKDD 2009, held in Bled, Slovenia, in September 2009. The 106 papers presented in two volumes, together with 5 invited talks, were carefully reviewed and selected from 422 paper submissions. In addition to the regular papers the volume contains 14 abstracts of papers appearing in full version in the Machine Learning Journal and the Knowledge Discovery and Databases Journal of Springer. The conference intends to provide an international forum for the discussion of the latest high quality research results in all areas related to machine learning and knowledge discovery in databases. The topics addressed are application of machine learning and data mining methods to real-world problems, particularly exploratory research that describes novel learning and mining tasks and applications requiring non-standard techniques.

OMICs-based Techniques for Global Food Security

Author : Sajid Fiaz
Publisher : John Wiley & Sons
ISBN 13 : 1394209142
Total Pages : 324 pages
Book Rating : 4.3/5 (942 download)

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Book Synopsis OMICs-based Techniques for Global Food Security by : Sajid Fiaz

Download or read book OMICs-based Techniques for Global Food Security written by Sajid Fiaz and published by John Wiley & Sons. This book was released on 2024-03-20 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: OMICs-based Techniques for Global Food Security Forward-thinking resource discussing how to integrate OMICs and novel genome editing technologies for sustainable crop production OMICS-based Techniques for Global Food Security provides an in-depth understanding of the mechanisms of OMICs techniques for crop improvement, details how OMICs techniques can contribute to identifying genes and traits with economic benefits, and explains how to develop crop plants with improved yield, quality, and resistance to stresses through genome editing technologies, providing evidence on the developments of climate resilient crops via applications of genome editing techniques throughout. The text covers the application of OMICs in crop plants, the integration of bioinformatics and multi-OMICs for precision breeding, de-novo domestication, CRISPR/Cas system for crop improvement, hybrid seed production, transgene free breeding, regulation for genome edit crops, bioinformatics and genome editing, and other topics related to OMICs and genome editing. The text also includes a chapter on global regulations for genome edited crops, and explains how these regulations influence novel plant breeding techniques in their adopted countries. Edited by two highly qualified academics, OMICs-based Techniques for Global Food Security covers topics such as: Crops genome sequencing and their application for crop improvement, and functional characterization of cereal genome The role of OMICs-based technologies in plant sciences and utilization of different multi-OMICs approaches for crop improvement Genomic database and genetic resource of cereals, speed breeding for rapid crop improvement, and evolution of genome editing technologies CRISPR system discovery, history, and future perspective, and CRISPR/Cas system for biotic and abiotic stress resistance in cereals Providing a collection of recent literature focusing on developments and applications of OMICs-based technologies for crop improvement, OMICs-based Techniques for Global Food Security is an important read for plant breeders, molecular biologists, researchers, postdoctoral fellows, and students in disciplines for developing crops with high yield and nutritional potential.

Pacific Symposium on Biocomputing 2013

Author : Russ Altman
Publisher : World Scientific
ISBN 13 : 9814447978
Total Pages : 470 pages
Book Rating : 4.8/5 (144 download)

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Book Synopsis Pacific Symposium on Biocomputing 2013 by : Russ Altman

Download or read book Pacific Symposium on Biocomputing 2013 written by Russ Altman and published by World Scientific. This book was released on 2013 with total page 470 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Pacific Symposium on Biocomputing (PSB) 2013 is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. Presentations are rigorously peer reviewed and are published in an archival proceedings volume. PSB 2013 will be held on January 3 OCo 7, 2013 in Kohala Coast, Hawaii. Tutorials and workshops will be offered prior to the start of the conference.PSB 2013 will bring together top researchers from the US, the Asian Pacific nations, and around the world to exchange research results and address open issues in all aspects of computational biology. It is a forum for the presentation of work in databases, algorithms, interfaces, visualization, modeling, and other computational methods, as applied to biological problems, with emphasis on applications in data-rich areas of molecular biology.The PSB has been designed to be responsive to the need for critical mass in sub-disciplines within biocomputing. For that reason, it is the only meeting whose sessions are defined dynamically each year in response to specific proposals. PSB sessions are organized by leaders of research in biocomputing's OC hot topics.OCO In this way, the meeting provides an early forum for serious examination of emerging methods and approaches in this rapidly changing field."

Evolution of Translational Omics

Author : Institute of Medicine
Publisher : National Academies Press
ISBN 13 : 0309224187
Total Pages : 354 pages
Book Rating : 4.3/5 (92 download)

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Book Synopsis Evolution of Translational Omics by : Institute of Medicine

Download or read book Evolution of Translational Omics written by Institute of Medicine and published by National Academies Press. This book was released on 2012-09-13 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Technologies collectively called omics enable simultaneous measurement of an enormous number of biomolecules; for example, genomics investigates thousands of DNA sequences, and proteomics examines large numbers of proteins. Scientists are using these technologies to develop innovative tests to detect disease and to predict a patient's likelihood of responding to specific drugs. Following a recent case involving premature use of omics-based tests in cancer clinical trials at Duke University, the NCI requested that the IOM establish a committee to recommend ways to strengthen omics-based test development and evaluation. This report identifies best practices to enhance development, evaluation, and translation of omics-based tests while simultaneously reinforcing steps to ensure that these tests are appropriately assessed for scientific validity before they are used to guide patient treatment in clinical trials.

Application of Bioinformatics in Cancers

Author : Chad Brenner
Publisher : MDPI
ISBN 13 : 3039217887
Total Pages : 418 pages
Book Rating : 4.0/5 (392 download)

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Book Synopsis Application of Bioinformatics in Cancers by : Chad Brenner

Download or read book Application of Bioinformatics in Cancers written by Chad Brenner and published by MDPI. This book was released on 2019-11-20 with total page 418 pages. Available in PDF, EPUB and Kindle. Book excerpt: This collection of 25 research papers comprised of 22 original articles and 3 reviews is brought together from international leaders in bioinformatics and biostatistics. The collection highlights recent computational advances that improve the ability to analyze highly complex data sets to identify factors critical to cancer biology. Novel deep learning algorithms represent an emerging and highly valuable approach for collecting, characterizing and predicting clinical outcomes data. The collection highlights several of these approaches that are likely to become the foundation of research and clinical practice in the future. In fact, many of these technologies reveal new insights about basic cancer mechanisms by integrating data sets and structures that were previously immiscible. Accordingly, the series presented here bring forward a wide range of artificial intelligence approaches and statistical methods that can be applied to imaging and genomics data sets to identify previously unrecognized features that are critical for cancer. Our hope is that these articles will serve as a foundation for future research as the field of cancer biology transitions to integrating electronic health record, imaging, genomics and other complex datasets in order to develop new strategies that improve the overall health of individual patients.

Computational Genomics with R

Author : Altuna Akalin
Publisher : CRC Press
ISBN 13 : 1498781861
Total Pages : 463 pages
Book Rating : 4.4/5 (987 download)

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Book Synopsis Computational Genomics with R by : Altuna Akalin

Download or read book Computational Genomics with R written by Altuna Akalin and published by CRC Press. This book was released on 2020-12-16 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data analysis techniques in genomics. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. The text provides accessible information and explanations, always with the genomics context in the background. This also contains practical and well-documented examples in R so readers can analyze their data by simply reusing the code presented. As the field of computational genomics is interdisciplinary, it requires different starting points for people with different backgrounds. For example, a biologist might skip sections on basic genome biology and start with R programming, whereas a computer scientist might want to start with genome biology. After reading: You will have the basics of R and be able to dive right into specialized uses of R for computational genomics such as using Bioconductor packages. You will be familiar with statistics, supervised and unsupervised learning techniques that are important in data modeling, and exploratory analysis of high-dimensional data. You will understand genomic intervals and operations on them that are used for tasks such as aligned read counting and genomic feature annotation. You will know the basics of processing and quality checking high-throughput sequencing data. You will be able to do sequence analysis, such as calculating GC content for parts of a genome or finding transcription factor binding sites. You will know about visualization techniques used in genomics, such as heatmaps, meta-gene plots, and genomic track visualization. You will be familiar with analysis of different high-throughput sequencing data sets, such as RNA-seq, ChIP-seq, and BS-seq. You will know basic techniques for integrating and interpreting multi-omics datasets. Altuna Akalin is a group leader and head of the Bioinformatics and Omics Data Science Platform at the Berlin Institute of Medical Systems Biology, Max Delbrück Center, Berlin. He has been developing computational methods for analyzing and integrating large-scale genomics data sets since 2002. He has published an extensive body of work in this area. The framework for this book grew out of the yearly computational genomics courses he has been organizing and teaching since 2015.

Advances in Bioinformatics

Author : Vijai Singh
Publisher : Springer Nature
ISBN 13 : 9819984017
Total Pages : 365 pages
Book Rating : 4.8/5 (199 download)

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Book Synopsis Advances in Bioinformatics by : Vijai Singh

Download or read book Advances in Bioinformatics written by Vijai Singh and published by Springer Nature. This book was released on with total page 365 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Next Steps for Functional Genomics

Author : National Academies of Sciences, Engineering, and Medicine
Publisher : National Academies Press
ISBN 13 : 0309676738
Total Pages : 201 pages
Book Rating : 4.3/5 (96 download)

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Book Synopsis Next Steps for Functional Genomics by : National Academies of Sciences, Engineering, and Medicine

Download or read book Next Steps for Functional Genomics written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2020-12-18 with total page 201 pages. Available in PDF, EPUB and Kindle. Book excerpt: One of the holy grails in biology is the ability to predict functional characteristics from an organism's genetic sequence. Despite decades of research since the first sequencing of an organism in 1995, scientists still do not understand exactly how the information in genes is converted into an organism's phenotype, its physical characteristics. Functional genomics attempts to make use of the vast wealth of data from "-omics" screens and projects to describe gene and protein functions and interactions. A February 2020 workshop was held to determine research needs to advance the field of functional genomics over the next 10-20 years. Speakers and participants discussed goals, strategies, and technical needs to allow functional genomics to contribute to the advancement of basic knowledge and its applications that would benefit society. This publication summarizes the presentations and discussions from the workshop.

Cardiovascular Genetics and Genomics in Clinical Practice

Author : Donna K. Arnett, PhD
Publisher : Demos Medical Publishing
ISBN 13 : 1617051780
Total Pages : 326 pages
Book Rating : 4.6/5 (17 download)

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Book Synopsis Cardiovascular Genetics and Genomics in Clinical Practice by : Donna K. Arnett, PhD

Download or read book Cardiovascular Genetics and Genomics in Clinical Practice written by Donna K. Arnett, PhD and published by Demos Medical Publishing. This book was released on 2014-11-10 with total page 326 pages. Available in PDF, EPUB and Kindle. Book excerpt: Weighted Numerical Score: 100 - 5 Stars! This is a systematic guide to cardiovascular genetics and genomics from basic concepts to clinical application. It organizes a large volume of information from an active area of research, which holds promise for future discovery. --Doody's Reviews Cardiovascular Genetics and Genomics in Clinical Practice presents clinical cases to illuminate basic concepts of cardiovascular genetics and genomics as practitioners encounter them in day-to-day practice. The unique use of real-world case discussions facilitates the memorization and understanding of basic principles, which can be more readily applied to actual cases. Cardiovascular Genetics and Genomics in Clinical Practice features a step-by-step learning process that begins with an easy-to-understand "primer" of basic scientific concepts regarding cardiovascular genetics and genomics followed by state-of-the-art research and applications for treatment of cardiovascular disorders. Expert clinicians and researchers describe illustrative cases for each topic along with detailed discussions of current scientific understanding and its application in current disease management and treatment. Summaries, key teaching points, and illustrations are highlighted to facilitate quick recall and review. The book will be useful for cardiovascular clinicians in training, board preparation, or as a review for those already in clinical practice. Cardiovascular Genetics and Genomics in Clinical Practice features: Clinical case scenarios to illuminate the basic concepts of cardiovascular genetics and genomics as they are used in daily practice Explanation of fundamental concepts as a foundation for more in-depth understanding Detailed discussions of current scientific knowledge and clinical management The expertise of renowned clinician-scientists in the field Real practical insight for practice

Science and Engineering in High-Throughput Biology Including a Theory on Parkinson's Disease

Author : Andr X. C. N. Valente
Publisher : Lulu.com
ISBN 13 : 1257111752
Total Pages : 95 pages
Book Rating : 4.2/5 (571 download)

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Book Synopsis Science and Engineering in High-Throughput Biology Including a Theory on Parkinson's Disease by : Andr X. C. N. Valente

Download or read book Science and Engineering in High-Throughput Biology Including a Theory on Parkinson's Disease written by Andr X. C. N. Valente and published by Lulu.com. This book was released on 2011-08 with total page 95 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biology is shifting from its data-poor origins to a quantitative data, high-throughput regime. Accompanying this change is an increasing technical capacity to engineer biological constructs. This book is about theory in this new context for the Life Sciences. Three articles, each preceded by an explanatory introduction, are presented. They propose: * A framework for prediction in this new data-rich regime. * A theory on the systemic nature and hematopoietic origin of Parkinson's Disease. * An approach to engineering design in the biological context, in particular in Synthetic Biology.