Investigating Lipid Heterogeneity in Single Cells Using Time-of-flight Secondary Ion Mass Spectrometry

Download Investigating Lipid Heterogeneity in Single Cells Using Time-of-flight Secondary Ion Mass Spectrometry PDF Online Free

Author :
Publisher :
ISBN 13 :
Total Pages : 182 pages
Book Rating : 4.:/5 (613 download)

DOWNLOAD NOW!


Book Synopsis Investigating Lipid Heterogeneity in Single Cells Using Time-of-flight Secondary Ion Mass Spectrometry by : Paul D. Piehowski

Download or read book Investigating Lipid Heterogeneity in Single Cells Using Time-of-flight Secondary Ion Mass Spectrometry written by Paul D. Piehowski and published by . This book was released on 2009 with total page 182 pages. Available in PDF, EPUB and Kindle. Book excerpt: Imaging time-of-flight secondary ion mass spectrometry (ToF-SIMS) can be utilized to map the spatial distribution of small molecules on a surface with potentially submicron resolution. Due to the inherent characteristics of this technique and its potential to provide higher spatial resolution than light microscopy based techniques without the use of chemical labels, it has been utilized to study the distribution of phospholipid species in the cell membrane. It is now known that many cell membranes contain transient compositional heterogeneities, colloquially referred to as domains, which participate in vital physiological processes such as exocytosis and signal transduction. Because of their size and lifetime, much remains unknown about the nature of these heterogeneities. ToF-SIMS imaging combined with cryogenic sample preparation techniques is a promising analytical platform poised to contribute greatly to this growing field of study. Sample preparation is crucial to obtaining quality lipid distribution maps, especially when dealing with single biological cells. To achieve this end the Winograd and Ewing groups have developed a freeze-fracture methodology adapted from cryo-SEM studies. Freeze-etching, the practice of removing excess surface water from a sample through sublimation into the vacuum of the analysis environment, has also been extensively used in conjunction with electron microscopy. This technique has been applied to ToF-SIMS imaging of cryogenically preserved single cells. By removing the excess water which condenses onto the sample in vacuo, a uniform surface is produced that is ideal for imaging by static SIMS. I demonstrate that the conditions employed to remove deposited water do not adversely affect cell morphology and do not redistribute molecules in the topmost surface layers. In addition, I found that water can be controllably re-deposited onto the sample at temperatures below -100° C in vacuum. The re-deposited water increases the ionization of characteristic fragments of biologically interesting molecules 2-fold without loss of spatial resolution. The utilization of freeze-etch methodology will increase the reliability of cryogenic sample preparations for SIMS analysis by providing greater control of the surface environment. Using these procedures, high quality spectra with both atomic bombardment as well as C60+ cluster ion bombardment, have been obtained. To date, many cell imaging studies have concentrated on phosphatidylcholine distributions, owing to its abundance and high ionization efficiency. However, cholesterol is a particularly interesting molecule due to its involvement in numerous biological processes. For many studies, the effectiveness of chemical mapping is limited by low signal intensity from various bio-molecules. Due to the high energy nature of the SIMS ionization process, many molecules are identified by detection of characteristic fragments. Commonly, fragments of a molecule are identified using standard samples, and those fragments are used to map the location of the molecule. MS/MS data obtained from a prototype C60+/ quadrupole time-of-flight mass spectrometer was used in conjunction with indium LMIG imaging to map previously unrecognized cholesterol fragments in single cells. A model system of J774 macrophages doped with cholesterol was used to show that these fragments are derived from cholesterol in cell imaging experiments. Examination of relative quantification experiments reveals that m/z 147 is the most specific diagnostic fragment and offers a 3-fold signal enhancement. These findings greatly increase the prospects for cholesterol mapping experiments in biological samples, particularly with single cell experiments. In addition, these findings demonstrate the wealth of information that is hidden in the traditional ToF-SIMS spectrum. In order for this technique to provide insight into biological processes, it is critical to characterize the figures of merit. Because a SIMS instrument counts individual events, the precision of the measurement is controlled by counting statistics. As the analysis area decreases, the number of molecules available for analysis diminishes. This becomes critical when imaging sub-cellular features; it limits the information obtainable, resulting in images with only a few counts of interest per pixel. Many features observed in low intensity images are artifacts of counting statistics, making validation of these features crucial to arriving at accurate conclusions. With ToF-SIMS imaging, the experimentally attainable spatial resolution is a function of the molecule of interest, sample matrix, concentration, primary ion, instrument transmission, and spot size of the primary ion beam. A model, based on Poisson statistics, has been developed to validate SIMS imaging data when signal is limited. This model can be used to estimate the effective spatial resolution and limits of detection prior to analysis, making it a powerful tool for tailoring future investigations. In addition, the model allows for pixel-to-pixel intensity comparisons and can be used to validate the significance of observed image features. The implications and capabilities of the model are demonstrated here by imaging the cell membrane of resting RBL-2H3 mast cells. Mass spectrometry imaging has been used to demonstrate that changes in membrane structure drive lipid domain formation in mating single-cell organisms. Chemical studies of lipid bilayers in both living and model systems have revealed that chemical composition is coupled to localized membrane structure. However, it is not clear if the lipids that compose the membrane actively modify membrane structure or if structural changes cause heterogeneity in the surface chemistry of the lipid bilayer. ToF-SIMS images of mating Tetrahymena thermophila, acquired at various stages during mating, can be used to demonstrate that lipid domain formation follows rather than precedes structural changes in the membrane. Domains are formed in response to structural changes that occur during cell-to-cell conjugation. This observation has wide implications in all membrane processes. There is considerable interest in the unique properties of cluster ion projectiles and investigations of how they may be utilized to improve biological imaging. A C60+ cluster ion projectile was employed for sputter cleaning biological surfaces to reveal spatio-chemical information obscured by contamination overlayers. This protocol is used as a supplemental sample preparation method for time of flight secondary ion mass spectrometry (ToF-SIMS) imaging of frozen and freeze dried biological materials. Following the removal of nanometers of material from the surface using sputter cleaning; a frozen-patterned cholesterol film and a freeze-dried tissue sample were analyzed using ToF-SIMS imaging. In both experiments, the chemical information was maintained after the sputter dose, due to the minimal chemical damage caused by C60+ bombardment. The damage to the surface produced by freeze-drying the tissue sample was found to have a greater effect on the loss of cholesterol signal than the sputter-induced damage. In addition to maintaining the chemical information, sputtering is not found to alter the spatial distribution of molecules on the surface. This approach removes artifacts that may obscure the surface chemistry of the sample and are common to many biological sample preparation schemes for ToF-SIMS imaging. In general, out results show that by removing these artifacts, the number of analyzable samples for SIMS imaging is greatly expanded. Although imaging with sub-cellular spatial resolution has been demonstrated, it is clear that the success of future experiments is limited by the ionization efficiency of the lipids, as well as limitations imposed by a coaxial ToF geometry. Considerable work has been done in the lab, to address these limitations. This effort has resulted in the development of a hybrid quadrupole orthogonal ToF instrument equipped with a C60+ primary ion source. The capabilities and potential of this new platform will greatly increase the contributions of SIMS to the biological sciences.

Development and Application of Methods for Mass Spectrometry Imaging of Lipids Across Biological Surfaces

Download Development and Application of Methods for Mass Spectrometry Imaging of Lipids Across Biological Surfaces PDF Online Free

Author :
Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (5 download)

DOWNLOAD NOW!


Book Synopsis Development and Application of Methods for Mass Spectrometry Imaging of Lipids Across Biological Surfaces by : Michael Edward Kurczy

Download or read book Development and Application of Methods for Mass Spectrometry Imaging of Lipids Across Biological Surfaces written by Michael Edward Kurczy and published by . This book was released on 2009 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Time of flight secondary ion mass spectrometric (ToF-SIMS) imaging is a powerful bioanalytical tool with the ability to produce molecular images of samples with submicron spatial resolution without the use of labels. In this thesis I will present the development of ToF-SIMS imaging methodology for biological analyses as well as applications that have yielded information about the role of lipids in membrane organization. In the first chapter, I introduce the plasma membrane and describe its fundamental role in maintaining life through the dynamic remodeling of its structure. I focus on two concepts that are believed to influence the localized chemical make up and structure of the membrane, intrinsic curvature and lipid domains. ToF-SIMS imaging is briefly described and a discussion of cluster ion bombardment and sample preparation is included. The chapter concludes with a survey of several important biological studies that have come out of the SIMS community. In Chapter 2 I report a protocol for the use of SIMS imaging to comparatively quantify the relative difference in cholesterol level between the plasma membranes of two cells. This development enables direct comparison of the chemical effects of different drug treatments and incubation conditions in the plasma membrane at the single-cell level. Relative, quantitative ToF-SIMS imaging was used to compare macrophage cells treated to contain elevated levels of cholesterol with respect to control cells. In-situ fluorescence microscopy with two different membrane dyes was used to discriminate morphologically similar but differentially treated cells prior to SIMS analysis. SIMS images of fluorescently identified cells reveal that the two populations of cells have distinct outer leaflet membrane compositions with the membranes of the cholesterol-treated macrophages containing more than twice the amount of cholesterol of control macrophages. Relative quantification with SIMS to compare the chemical composition of single-cells can provide valuable information about normal biological functions, causative agents of diseases, and possible therapies for diseases. Chapter 3 investigates prospects for three-dimensional SIMS analysis of biological materials using model multilayer structures and single cells. The samples were analyzed in a ToF-SIMS spectrometer equipped with a 20 and a 40 keV buckminsterfullerene (C60+) ion source. Specifically, molecular depth profile studies involving dehydrated dipalmitoylphosphatidylcholine (DPPC) organic films indicate that cell membrane lipid materials do not experience significant chemical damage when bombarded with C60+ ion fluences greater than 1015 ions/cm2. Moreover, depth profile analyses of DPPC?sucrose frozen multilayer structures suggest that biomolecule information can be uncovered after the C60+ sputter removal of a 20 nm overlayer with no appreciable loss of underlying molecular signal. The resulting depth information was used to characterize C60+ bombardment of biological materials. This information was used to controllably remove the plasma membrane of a single macrophage cell using a molecular depth profile approach allowing the analysis of the chemistry of the cytoplasm. Two methods that were developed to increase the reproducibility of biological SIMS analysis are covered in Chapter 4. First I demonstrate the utility of the C60+ cluster ion projectile for sputter cleaning biological surfaces to reveal obscured spatio-chemical information. Following the removal of nanometers of material from the surface using sputter cleaning; a frozen-patterned cholesterol film and a freeze-dried tissue sample were analyzed using ToF-SIMS imaging. In both experiments the chemical information was maintained after the sputter dose, due to the minimal chemical damage caused by C60+ bombardment. In fact, the damage to the surface produced by freeze-drying the tissue sample was found to have a greater effect on the loss of cholesterol signal than the sputter-induced damage. In addition to maintaining the chemical information, sputtering did not alter the spatial distribution of the surface chemistry. This approach removes artifacts that are common to many biological sample preparation schemes for ToF-SIMS imaging. Removing these artifacts, which may obscure the surface chemistry of the sample, will increase the number of analyzable samples for SIMS imaging. The second method covered in Chapter 4 is freeze-etching, the practice of removing excess surface water from a sample through sublimation into the vacuum of the analysis environment. This method was used to cryogenically preserve single cells for ToF-SIMS imaging analysis. By removing the excess water, which condenses onto the sample in vacuo, a uniform surface is produced that is ideal for imaging by static SIMS. I demonstrate that the conditions employed to remove deposited water do not adversely affect cell morphology and do not redistribute molecules in the top most surface layers. In addition, I found water could be controllably re-deposited onto the sample at temperatures below -100 oC in vacuum. The re-deposited water increases the ionization of characteristic fragments of biologically interesting molecules 2-fold without loss of spatial resolution. The utilization of freeze-etch methodology will increase the reliability of cryogenic sample preparations for SIMS analysis by providing greater control of the surface environment. Using these procedures we have obtained high quality images and spectra with both atomic bombardment as well as C60+ cluster ion bombardment. Sample handling is also the topic of Chapter 5. It this chapter, I describe a device which has been designed to prepare frozen, hydrated single cell cultures with a freeze fracture methodology for ToF-SIMS analysis in an ION-TOF (GmbH) TOF-SIMS IV mass spectrometer. The device reproducibly produces frozen hydrated sample surfaces for SIMS analysis. I show that SIMS analysis with the Bi32+ produces high-resolution molecular images of single PC12 cells in an ice matrix. I also show that the combination of ionization enhancements that are provided by both the ice matrix and the cluster ion source facilitates the localization of lipid ions that have not been localized in these cells previously. Namely, two fragments of phosphatidlyethanolamine (m/z 124 and m/z 142) and a large fragment of phosphatidylcholine (m/z 224). The ability to localize and measure these ions will increase the number of question that SIMS imaging can be used to answer. In Chapter 6 ToF-SIMS imaging was used to demonstrate that lipid domain formation in mating single-cell organisms is driven by changes in membrane structure. Studies of lipid bilayers in both living and model systems have revealed that lipid composition is coupled to localized membrane structure. However, it is still not clear if the lipids that compose the membrane actively modify membrane structure or if it is structural changes that cause lipid heterogeneity. I report that time of flight secondary ion mass spectrometry images of mating Tetrahymena thermophila acquired before, during and after mating demonstrate that lipid domain formation, identified as a decrease in the lamellar lipid phosphatidylcholine, does not precede structural changes in the membrane. Rather, domains are formed in response to function during cell-to-cell conjugation. ToF-SIMS imaging has been used to collect information with wide implications in all membrane processes. The work presented here is the continuation of a project aimed at chemically characterizing biological samples with spatially resolved mass spectra, with a particular focus on single cell imaging. Much of the work I have done has centered on understanding the capability of current technology and using this understanding to solve a particular problem. This work is vital to keeping SIMS in the biological realm but the development of new technology is the ultimate future for these experiments by increasing the number of tools that the experimenter has to choose from. In Chapter 7 discuss two ongoing projects that I think will lead to the next break through bringing us closer to realizing the goal of this project: a complete chemical map of a single cell.

Visualisation and Profiling of Lipids in Single Biological Cells Using Time-of-Flight Secondary Ion Mass Spectrometry

Download Visualisation and Profiling of Lipids in Single Biological Cells Using Time-of-Flight Secondary Ion Mass Spectrometry PDF Online Free

Author :
Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (827 download)

DOWNLOAD NOW!


Book Synopsis Visualisation and Profiling of Lipids in Single Biological Cells Using Time-of-Flight Secondary Ion Mass Spectrometry by : Hua Tian

Download or read book Visualisation and Profiling of Lipids in Single Biological Cells Using Time-of-Flight Secondary Ion Mass Spectrometry written by Hua Tian and published by . This book was released on 2011 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Lipid Characterization with Time-of-flight Secondary Ion Mass Spectrometry (ToF-SIMS)

Download Lipid Characterization with Time-of-flight Secondary Ion Mass Spectrometry (ToF-SIMS) PDF Online Free

Author :
Publisher :
ISBN 13 :
Total Pages : 182 pages
Book Rating : 4.:/5 (78 download)

DOWNLOAD NOW!


Book Synopsis Lipid Characterization with Time-of-flight Secondary Ion Mass Spectrometry (ToF-SIMS) by : Melissa Kathleen Passarelli

Download or read book Lipid Characterization with Time-of-flight Secondary Ion Mass Spectrometry (ToF-SIMS) written by Melissa Kathleen Passarelli and published by . This book was released on 2011 with total page 182 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Secondary Ion Mass Spectrometry as a Tool to Evaluate Chemical Composition Within Model and Cellular Membranes

Download Secondary Ion Mass Spectrometry as a Tool to Evaluate Chemical Composition Within Model and Cellular Membranes PDF Online Free

Author :
Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (774 download)

DOWNLOAD NOW!


Book Synopsis Secondary Ion Mass Spectrometry as a Tool to Evaluate Chemical Composition Within Model and Cellular Membranes by : Christopher R. Anderton

Download or read book Secondary Ion Mass Spectrometry as a Tool to Evaluate Chemical Composition Within Model and Cellular Membranes written by Christopher R. Anderton and published by . This book was released on 2011 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Developing tools to elucidate the chemical distribution of lipid components within the eukaryotic cellular membrane is critical to understanding their role in many cell processes. Secondary ion mass spectrometry (SIMS) is a technique that offers both chemical and spatial specificity, and has become popularized over the last decade for analyzing model and native cellular membranes. Herein, this thesis describes the use and development of SIMS for such samples. By employing high-resolution SIMS, performed on a Cameca NanoSIMS 50, and atomic force microscopy (AFM) the influence of cholesterol on the phase behavior of supported lipid membranes containing saturated phosphatidylcholine lipid species was studied. While the NanoSIMS 50 afforded unprecedented lateral resolution on the chemical distribution of these model membranes, it was achieved at the cost of employing stable-isotope labels for component identification. Time-of-flight SIMS (TOF-SIMS), on the other hand, is a molecular imaging technique that does not require the use of labeled species. However, the ability to image characteristic lipid fragments (i.e. lipid headgroups, etc.) at lateral resolutions comparable to the NanoSIMS 50 is challenging. Furthermore, many of the characteristic fragments are common between structurally similar lipids, such as different phosphatidylcholine species, making discrimination between these species difficult. This challenge was overcome by developing a multivariate analysis (MVA) method, called principal component analysis (PCA), for evaluating the TOF-SIMS spectra of these samples. As a result, the ability to image and identify saturated phosphatidylcholine lipids that differ only in chain length within phase-separated membranes was achieved and could be registered to the corresponding AFM image. By performing PCA to compare TOF-SIMS spectra of labeled and unlabeled species, the molecular ion peaks that are associated with these phosphatidylcholine lipids were identified. These known ion peaks were then used to optimize PCA for TOF-SIMS imaging of phase-separated supported lipid membranes to attain a greater lateral characterization of these samples. The ability to gain quantitative information from TOF-SIMS analysis of homogenous supported lipid membranes was made possible by performing partial least squares regression (PLSR) on the resulting mass spectrum. Here, calibration samples were modeled, and then used to quantitatively predict the content of unknown membrane samples. Lastly, a TOF-SIMS MVA approach was utilized to evaluate native cellular membranes with the goals of differentiating between cell types, and in a separate project, identify the binding of vascular endothelial growth factors to human endothelial cells.

Single Cell Metabolism

Download Single Cell Metabolism PDF Online Free

Author :
Publisher : Humana
ISBN 13 : 9781493998296
Total Pages : 0 pages
Book Rating : 4.9/5 (982 download)

DOWNLOAD NOW!


Book Synopsis Single Cell Metabolism by : Bindesh Shrestha

Download or read book Single Cell Metabolism written by Bindesh Shrestha and published by Humana. This book was released on 2019-09-30 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume explores the latest techniques and workflow for the analysis of single cells metabolism. The chapters in this book cover topics such as the development of mass spectrometry-based single cell approaches, Pico-ESI-MS for single-cell metabolomics analysis; laser capture microdissection; ambient single cell metabolite profile (DESI and LAESI); and MALDI-MS methodology, quantum dots for quantitative cytology to study metabolic heterogeneity of single cells. Written in the highly successful Methods in Molecular Biology series format, the chapters consist of introductions to the topic, lists of the necessary materials and reagents, step-by-step guidelines, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and authoritative, Single Cell Metabolism: Methods and Protocols is a valuable resource for any researcher and scientist interested in learning more about this field.

Lipidomic Analysis of Single Cells and Organelles Using Nanomanipulation Coupled to Mass Spectrometry

Download Lipidomic Analysis of Single Cells and Organelles Using Nanomanipulation Coupled to Mass Spectrometry PDF Online Free

Author :
Publisher :
ISBN 13 :
Total Pages : 129 pages
Book Rating : 4.:/5 (126 download)

DOWNLOAD NOW!


Book Synopsis Lipidomic Analysis of Single Cells and Organelles Using Nanomanipulation Coupled to Mass Spectrometry by : Mandy Bowman

Download or read book Lipidomic Analysis of Single Cells and Organelles Using Nanomanipulation Coupled to Mass Spectrometry written by Mandy Bowman and published by . This book was released on 2016 with total page 129 pages. Available in PDF, EPUB and Kindle. Book excerpt: The capability to characterize disease states by way of determining novel biomarkers has led to a high demand of single cell and organelle analytical methodologies due to the unexpected heterogeneity present in cells of the same type. Lipids are of particular interest in the search for biomarkers due to their active roles in cellular metabolism and energy storage. Analyzing localized lipid chemistry from individual cells and organelles is challenging however, due to low analyte volume, limited discriminate instrumentation, and common requirements of separation procedures and expenditure of cell sample. Using nanomanipulation in combination with mass spectrometry, individual cells and organelles can be extracted from tissues and cultures in vitro to determine if heterogeneity at the cellular level is present. The discriminate extraction of a single cell or organelle allows the remainder of cell culture or tissue to remain intact, while the high sensitivity and chemical specificity of mass spectrometry provides structural information for limited volumes without the need for chromatographic separation. Mass analysis of lipids extracted from individual cells can be carried out in multiple mass spectrometry platforms through direct-inject mass spectrometry using nanoelectrospray-ionization and through matrix-assisted laser/desorption ionization.

Precision Medicine for Investigators, Practitioners and Providers

Download Precision Medicine for Investigators, Practitioners and Providers PDF Online Free

Author :
Publisher : Academic Press
ISBN 13 : 0128191791
Total Pages : 640 pages
Book Rating : 4.1/5 (281 download)

DOWNLOAD NOW!


Book Synopsis Precision Medicine for Investigators, Practitioners and Providers by : Joel Faintuch

Download or read book Precision Medicine for Investigators, Practitioners and Providers written by Joel Faintuch and published by Academic Press. This book was released on 2019-11-16 with total page 640 pages. Available in PDF, EPUB and Kindle. Book excerpt: Precision Medicine for Investigators, Practitioners and Providers addresses the needs of investigators by covering the topic as an umbrella concept, from new drug trials to wearable diagnostic devices, and from pediatrics to psychiatry in a manner that is up-to-date and authoritative. Sections include broad coverage of concerning disease groups and ancillary information about techniques, resources and consequences. Moreover, each chapter follows a structured blueprint, so that multiple, essential items are not overlooked. Instead of simply concentrating on a limited number of extensive and pedantic coverages, scholarly diagrams are also included. Provides a three-pronged approach to precision medicine that is focused on investigators, practitioners and healthcare providers Covers disease groups and ancillary information about techniques, resources and consequences Follows a structured blueprint, ensuring essential chapters items are not overlooked

Probing the Formation of Mammalian Cell Lipid Microdomains with Nanometer-scale Imaging Secondary Ion Mass Spectrometry

Download Probing the Formation of Mammalian Cell Lipid Microdomains with Nanometer-scale Imaging Secondary Ion Mass Spectrometry PDF Online Free

Author :
Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (931 download)

DOWNLOAD NOW!


Book Synopsis Probing the Formation of Mammalian Cell Lipid Microdomains with Nanometer-scale Imaging Secondary Ion Mass Spectrometry by :

Download or read book Probing the Formation of Mammalian Cell Lipid Microdomains with Nanometer-scale Imaging Secondary Ion Mass Spectrometry written by and published by . This book was released on 2015 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Methodologies for Metabolomics

Download Methodologies for Metabolomics PDF Online Free

Author :
Publisher : Cambridge University Press
ISBN 13 : 0521765900
Total Pages : 641 pages
Book Rating : 4.5/5 (217 download)

DOWNLOAD NOW!


Book Synopsis Methodologies for Metabolomics by : Norbert W. Lutz

Download or read book Methodologies for Metabolomics written by Norbert W. Lutz and published by Cambridge University Press. This book was released on 2013-01-21 with total page 641 pages. Available in PDF, EPUB and Kindle. Book excerpt: Metabolomics, the global characterisation of the small molecule complement involved in metabolism, has evolved into a powerful suite of approaches for understanding the global physiological and pathological processes occurring in biological organisms. The diversity of metabolites, the wide range of metabolic pathways and their divergent biological contexts require a range of methodological strategies and techniques. Methodologies for Metabolomics provides a comprehensive description of the newest methodological approaches in metabolomic research. The most important technologies used to identify and quantify metabolites, including nuclear magnetic resonance and mass spectrometry, are highlighted. The integration of these techniques with classical biological methods is also addressed. Furthermore, the book presents statistical and chemometric methods for evaluation of the resultant data. The broad spectrum of topics includes a vast variety of organisms, samples and diseases, ranging from in vivo metabolomics in humans and animals to in vitro analysis of tissue samples, cultured cells and biofluids.

Cholesterol Modulation of Protein Function

Download Cholesterol Modulation of Protein Function PDF Online Free

Author :
Publisher : Springer
ISBN 13 : 3030042782
Total Pages : 197 pages
Book Rating : 4.0/5 (3 download)

DOWNLOAD NOW!


Book Synopsis Cholesterol Modulation of Protein Function by : Avia Rosenhouse-Dantsker

Download or read book Cholesterol Modulation of Protein Function written by Avia Rosenhouse-Dantsker and published by Springer. This book was released on 2019-01-16 with total page 197 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this book, renowned scientists describe the role of steroid chirality and modification of lipid membrane physical properties in the modulation of G protein-coupled receptors and ion channels. The application of commonly-used technical approaches such as mass spectrometry and nucleic magnetic resonance transfer spectroscopy for studies on cholesterol distribution and alteration of lipid bilayer characteristics is also discussed. This book offers comprehensive insights into the current understanding of cholesterol-driven modulation of protein function via mechanisms that extend beyond lipid-protein direct interactions. In the first part, the chapters introduce the reader to the use of the chemical derivatives of cholesterol as a valuable laboratory tool in the studies of cholesterol-driven modulation of protein function. In the second part, examples of cholesterol-induced changes in membrane physical characteristics are presented and discussed in light of their multifaceted contribution to the effect of cholesterol on protein function. The book will be of interest to undergraduate and graduate students as well as basic science and medical researchers with a keen interest in the biophysical properties of cholesterol and physiological consequences of cholesterol presence in biological systems.

Cluster Secondary Ion Mass Spectrometry

Download Cluster Secondary Ion Mass Spectrometry PDF Online Free

Author :
Publisher : John Wiley & Sons
ISBN 13 : 1118589246
Total Pages : 325 pages
Book Rating : 4.1/5 (185 download)

DOWNLOAD NOW!


Book Synopsis Cluster Secondary Ion Mass Spectrometry by : Christine M. Mahoney

Download or read book Cluster Secondary Ion Mass Spectrometry written by Christine M. Mahoney and published by John Wiley & Sons. This book was released on 2013-04-17 with total page 325 pages. Available in PDF, EPUB and Kindle. Book excerpt: Explores the impact of the latest breakthroughs in cluster SIMS technology Cluster secondary ion mass spectrometry (SIMS) is a high spatial resolution imaging mass spectrometry technique, which can be used to characterize the three-dimensional chemical structure in complex organic and molecular systems. It works by using a cluster ion source to sputter desorb material from a solid sample surface. Prior to the advent of the cluster source, SIMS was severely limited in its ability to characterize soft samples as a result of damage from the atomic source. Molecular samples were essentially destroyed during analysis, limiting the method's sensitivity and precluding compositional depth profiling. The use of new and emerging cluster ion beam technologies has all but eliminated these limitations, enabling researchers to enter into new fields once considered unattainable by the SIMS method. With contributions from leading mass spectrometry researchers around the world, Cluster Secondary Ion Mass Spectrometry: Principles and Applications describes the latest breakthroughs in instrumentation, and addresses best practices in cluster SIMS analysis. It serves as a compendium of knowledge on organic and polymeric surface and in-depth characterization using cluster ion beams. It covers topics ranging from the fundamentals and theory of cluster SIMS, to the important chemistries behind the success of the technique, as well as the wide-ranging applications of the technology. Examples of subjects covered include: Cluster SIMS theory and modeling Cluster ion source types and performance expectations Cluster ion beams for surface analysis experiments Molecular depth profiling and 3-D analysis with cluster ion beams Specialty applications ranging from biological samples analysis to semiconductors/metals analysis Future challenges and prospects for cluster SIMS This book is intended to benefit any scientist, ranging from beginning to advanced in level, with plenty of figures to help better understand complex concepts and processes. In addition, each chapter ends with a detailed reference set to the primary literature, facilitating further research into individual topics where desired. Cluster Secondary Ion Mass Spectrometry: Principles and Applications is a must-have read for any researcher in the surface analysis and/or imaging mass spectrometry fields.

Proteomics for Biological Discovery

Download Proteomics for Biological Discovery PDF Online Free

Author :
Publisher : John Wiley & Sons
ISBN 13 : 0470007737
Total Pages : 361 pages
Book Rating : 4.4/5 (7 download)

DOWNLOAD NOW!


Book Synopsis Proteomics for Biological Discovery by : Timothy D. Veenstra

Download or read book Proteomics for Biological Discovery written by Timothy D. Veenstra and published by John Wiley & Sons. This book was released on 2006-06-12 with total page 361 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written by recognized experts in the study of proteins, Proteomics for Biological Discovery begins by discussing the emergence of proteomics from genome sequencing projects and a summary of potential answers to be gained from proteome-level research. The tools of proteomics, from conventional to novel techniques, are then dealt with in terms of underlying concepts, limitations and future directions. An invaluable source of information, this title also provides a thorough overview of the current developments in post-translational modification studies, structural proteomics, biochemical proteomics, microfabrication, applied proteomics, and bioinformatics relevant to proteomics. Presents a comprehensive and coherent review of the major issues faced in terms of technology development, bioinformatics, strategic approaches, and applications Chapters offer a rigorous overview with summary of limitations, emerging approaches, questions, and realistic future industry and basic science applications Discusses higher level integrative aspects, including technical challenges and applications for drug discovery Accessible to the novice while providing experienced investigators essential information Proteomics for Biological Discovery is an essential resource for students, postdoctoral fellows, and researchers across all fields of biomedical research, including biochemistry, protein chemistry, molecular genetics, cell/developmental biology, and bioinformatics.

Ex Vivo Engineering of the Tumor Microenvironment

Download Ex Vivo Engineering of the Tumor Microenvironment PDF Online Free

Author :
Publisher : Springer
ISBN 13 : 3319453971
Total Pages : 142 pages
Book Rating : 4.3/5 (194 download)

DOWNLOAD NOW!


Book Synopsis Ex Vivo Engineering of the Tumor Microenvironment by : Amir R. Aref

Download or read book Ex Vivo Engineering of the Tumor Microenvironment written by Amir R. Aref and published by Springer. This book was released on 2016-12-09 with total page 142 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume will outline how to recreate the tumor microenvironment, to culture primary tumors without the need for developmental priming factors, and to deliver targeted therapeutics in a manner that recapitulates pharmacokinetics in vivo. Much of what may be learned from this volume will aid in understanding many aspects of the enhanced study of tumor cell biology in a physiologic context, open new avenues for drug screening and biomarker development, and accelerate the preclinical evaluation of novel personalized medicine strategies for patients in real time.

MALDI Mass Spectrometry Imaging

Download MALDI Mass Spectrometry Imaging PDF Online Free

Author :
Publisher : Royal Society of Chemistry
ISBN 13 : 1839162414
Total Pages : 541 pages
Book Rating : 4.8/5 (391 download)

DOWNLOAD NOW!


Book Synopsis MALDI Mass Spectrometry Imaging by : Tiffany Siegel Porta

Download or read book MALDI Mass Spectrometry Imaging written by Tiffany Siegel Porta and published by Royal Society of Chemistry. This book was released on 2021-12-03 with total page 541 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book gathers knowledge about matrix-assisted laser desorption ionisation (MALDI) mass spectrometry imaging for postgraduate and professional researchers in academia and in industry where it has direct application to clinical research.

Mass Spectrometry Handbook

Download Mass Spectrometry Handbook PDF Online Free

Author :
Publisher : John Wiley & Sons
ISBN 13 : 1118180720
Total Pages : 1362 pages
Book Rating : 4.1/5 (181 download)

DOWNLOAD NOW!


Book Synopsis Mass Spectrometry Handbook by : Mike S. Lee

Download or read book Mass Spectrometry Handbook written by Mike S. Lee and published by John Wiley & Sons. This book was released on 2012-04-16 with total page 1362 pages. Available in PDF, EPUB and Kindle. Book excerpt: Due to its enormous sensitivity and ease of use, mass spectrometry has grown into the analytical tool of choice in most industries and areas of research. This unique reference provides an extensive library of methods used in mass spectrometry, covering applications of mass spectrometry in fields as diverse as drug discovery, environmental science, forensic science, clinical analysis, polymers, oil composition, doping, cellular research, semiconductor, ceramics, metals and alloys, and homeland security. The book provides the reader with a protocol for the technique described (including sampling methods) and explains why to use a particular method and not others. Essential for MS specialists working in industrial, environmental, and clinical fields.

Tandem Mass Spectrometry of Lipids

Download Tandem Mass Spectrometry of Lipids PDF Online Free

Author :
Publisher : Royal Society of Chemistry
ISBN 13 : 1782626352
Total Pages : 295 pages
Book Rating : 4.7/5 (826 download)

DOWNLOAD NOW!


Book Synopsis Tandem Mass Spectrometry of Lipids by : Robert C Murphy

Download or read book Tandem Mass Spectrometry of Lipids written by Robert C Murphy and published by Royal Society of Chemistry. This book was released on 2014-12-02 with total page 295 pages. Available in PDF, EPUB and Kindle. Book excerpt: The emerging field of lipidomics has been made possible because of advances in mass spectrometry, and in particular tandem mass spectrometry of lipid ions generated by electrospray ionization. The ability to carry out basic biochemical studies of lipids using electrospray ionization is predicated upon understanding the behaviour of lipid derived ions following collision induced decomposition and mechanisms of product ion formation. During the past 20 years, a wealth of information has been generated about lipid molecules that are now analysed by mass spectrometry, however there is no central source where one can obtain basic information about how these very diverse biomolecules behave following collisional activation. This book brings together, in one volume, this information so that investigators considering using tandem mass spectrometry to structurally characterize lipids or to quantitate their occurrence in a biological matrix, will have a convenient source to review mechanism of decomposition reactions related to the diversity of lipid structures. A separate chapter is devoted to each of seven major lipid classes including fatty acids, eicosanoids and bioactive lipid mediators, fatty acyl esters and amides, glycerol esters, glycerophospholipids, sphingolipids, and steroids. Mechanistic details are provided for understanding the pathways of formation of major product ions and ions used for structural characterization. In most cases specific ancillary information has been critical to understand the pathways, including isotope labeling and high resolution analysis of precursor and product ions. For a few specific examples such data is missing and pathways are proposed as a means to initiate further mass spectral experiments to prove or disprove pathway hypotheses. While this work largely centres on the lipid biochemistry of animal (mammalian) systems, general principles can be taken from the specific examples and applied to lipid biochemistry found in plants, fungi, prokaryotes and archeal organisms.