Exploring Non-Heme Iron Enzyme Catalysis

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ISBN 13 :
Total Pages : 289 pages
Book Rating : 4.:/5 (115 download)

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Book Synopsis Exploring Non-Heme Iron Enzyme Catalysis by : Madison Leigh Davidson

Download or read book Exploring Non-Heme Iron Enzyme Catalysis written by Madison Leigh Davidson and published by . This book was released on 2020 with total page 289 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Non-heme Iron Enzymes: Structures and Mechanisms

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Publisher : Academic Press
ISBN 13 : 0128187743
Total Pages : 134 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Non-heme Iron Enzymes: Structures and Mechanisms by :

Download or read book Non-heme Iron Enzymes: Structures and Mechanisms written by and published by Academic Press. This book was released on 2019-09-28 with total page 134 pages. Available in PDF, EPUB and Kindle. Book excerpt: Nonheme Iron Enzymes: Structures and Mechanisms, Volume 117, highlights new advances in the field, with this new volume presenting new and interesting chapters on the topics. Each chapter is written by an international board of authors. Targeted to a very wide audience of specialists, researchers and students Contains timely chapters written by well-renowned authorities in their field Includes a number of high quality illustrations, figures and tables

Spectroscopic and Computational Studies of Mononuclear Nonheme Iron Enzymes

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (878 download)

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Book Synopsis Spectroscopic and Computational Studies of Mononuclear Nonheme Iron Enzymes by : Kenneth M. Light

Download or read book Spectroscopic and Computational Studies of Mononuclear Nonheme Iron Enzymes written by Kenneth M. Light and published by . This book was released on 2014 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Mononuclear nonheme iron enzymes (NH Fe enzymes) catalyze a variety of biological reactions. A large group of NH Fe enzymes use a ferrous active site to activate dioxygen towards reaction with substrate, and require an additional cofactor as a source of electrons necessary for catalysis. The main part of this thesis involves the application of a circular dichroism (CD), magnetic circular dichroism (MCD) and variable temperature, variable-field MCD (VTVH MCD) spectroscopic methodology to a series of alpha-ketoglurate-dependent (alpha-KG-dependent) enzymes for the purpose of understanding how this enzyme family and the NH Ferrous enzymes in general induce the dissociation the generation of a 5C site for dioxgyen reactivity, as well as how dioxygen binding is oriented for proper catalysis. In addition to catalyzing oxidation of organic substrates, NH Fe enzymes are also involved in the catalytic hydrolysis and hydration of substrates. A prominent example of this is nitrile hydratases (NHases), unusual low-spin (LS) Ferric or Cobaltic enzymes that catalyze the conversion of nitriles to amides in soil bacteria. Another part of this thesis involves the spectroscopic characterization of a ferric NHase for the determination of its active site geometric and electronic structure, which are used to calibrate a computational model which is extended to explore the NHase catalytic mechanism.

MULTILEVEL COMPUTATIONAL INVESTIGATION INTO THE DYNAMICS AND REACTION MECHANISMS OF NON-HEME IRON AND 2-OXOGLUTARATE DEPENDENT ENZYMES

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (137 download)

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Book Synopsis MULTILEVEL COMPUTATIONAL INVESTIGATION INTO THE DYNAMICS AND REACTION MECHANISMS OF NON-HEME IRON AND 2-OXOGLUTARATE DEPENDENT ENZYMES by :

Download or read book MULTILEVEL COMPUTATIONAL INVESTIGATION INTO THE DYNAMICS AND REACTION MECHANISMS OF NON-HEME IRON AND 2-OXOGLUTARATE DEPENDENT ENZYMES written by and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Abstract : Computational chemistry methods have been extensively applied to investigate biological systems. This dissertation utilizes a multilevel computational approach to explore the dynamics and reaction mechanisms of two groups of enzymes belonging to non-heme Fe(II) and 2-oxoglutarate (2OG) dependent superfamily - histone lysine demethylases from class 7 and ethylene forming enzyme (EFE). Chapter 2 uncovers the role of conformational dynamics in the substrate selectivity of histone lysine demethylases 7A and 7B. The molecular dynamics (MD) simulations of the two enzymes revealed the importance of linker flexibility and dynamics in relative orientations of the reader (PHD) and the catalytic (JmjC) domains. Chapter 3 describes the use of combined quantum mechanics/molecular mechanics (QM/MM) and MD simulations to explore the reaction mechanism of histone lysine demethylases 7B (PHF8), including dioxygen activation, 2OG binding modes, and substrate demethylation steps. Importantly, the calculations imply the rearrangement of the 2OG C-1 carboxylate prior to dioxygen binding at a five-coordination stage in catalysis, highlighting the dynamic nature of the non-heme Fe-center. Chapter 4 develops a computational framework for identifying second coordination sphere (SCS) and especially long range (LR) residues relevant for catalysis through dynamic cross correlation analysis (DCCA) using the PHF8 as a model oxygenase and explores their effects on the rate determining hydrogen atom transfer step. The results from the QM/MM calculations suggest that DCCA can identify non-active site residues relevant to catalysis. Chapter 5 explores the unique catalytic mechanism of EFE. In particular, the study elucidates the atomic and electronic structure determinants that distinguish between ethylene formation and L-Arg hydroxylation reaction mechanisms in the EFE. The results indicated that synergy between the conformation of L-Arg and the coordination mode of 2OG directs the reaction toward ethylene formation or L-Arg hydroxylation. Chapter 6 demonstrates that applying an external electric field (EEF) along the Fe-O bond in the EFE·Fe(III)·OO.-·2OG·L-Arg complex can switch the EFE reactivity between L-Arg hydroxylation and ethylene generation. Overall, applying an EEF on EFE indicates that making the intrinsic electric field of EFE less negative and stabilizing the off-line binding of 2OG might increase ethylene generation while reducing L-Arg hydroxylation. Chapter 7 probes the role of the protein environment in modulating the dioxygen diffusion and binding and thus ultimately contributing to the diverging reactivities of PHF8 and EFE. Overall, the results of this dissertation together highlight the several catalytic strategies utilized by the non-heme Fe(II) and 2OG dependent enzymes for achieving their reaction outcomes. In the longer term, the results can be used to modulate the activities of these enzymes either through enzyme redesign or the generation of enzyme-selective inhibitors.

Iron-Containing Enzymes

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Publisher : Royal Society of Chemistry
ISBN 13 : 1849732981
Total Pages : 463 pages
Book Rating : 4.8/5 (497 download)

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Book Synopsis Iron-Containing Enzymes by : Samuel P de Visser

Download or read book Iron-Containing Enzymes written by Samuel P de Visser and published by Royal Society of Chemistry. This book was released on 2011-08-04 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: There are many mononuclear iron containing enzymes in nature that utilize molecular oxygen and transfer one or both oxygen atoms of O2 to substrates. These enzymes catalyze many processes including the biosynthesis of hormones, the metabolism of drugs, DNA and RNA base repair and, the biosynthesis of antibiotics. Therefore, mononuclear iron containing enzymes are important intermediates in bioprocesses and have great potential in the commercial biosynthesis of specific products since they often catalyze reactions regioselectively or stereospecifically. Understanding their mechanism and function is important and will assist in searches for commercial exploitation. In recent years, advances in experimental as well as theoretical methodologies have made it possible to study the mechanism and function of these enzymes and much information on their properties has been gained. This book highlighting recent developments in the field is, therefore, a timely addition to the literature and will interest a broad readership in the fields of biochemistry, inorganic chemistry and computational chemistry. The Editors, leaders in the field of nonheme and heme iron containing monoxygenases, have filled the book with topical review chapters by leaders in the various sub-disciplines.

2-Oxoglutarate-Dependent Oxygenases

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Publisher : Royal Society of Chemistry
ISBN 13 : 1849739501
Total Pages : 508 pages
Book Rating : 4.8/5 (497 download)

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Book Synopsis 2-Oxoglutarate-Dependent Oxygenases by : Christopher J Schofield

Download or read book 2-Oxoglutarate-Dependent Oxygenases written by Christopher J Schofield and published by Royal Society of Chemistry. This book was released on 2015-05-06 with total page 508 pages. Available in PDF, EPUB and Kindle. Book excerpt: Since the discovery of the first examples of 2-oxoglutarate-dependent oxygenase-catalysed reactions in the 1960s, a remarkably broad diversity of alternate reactions and substrates has been revealed, and extensive advances have been achieved in our understanding of the structures and catalytic mechanisms. These enzymes are important agrochemical targets and are being pursued as therapeutic targets for a wide range of diseases including cancer and anemia. This book provides a central source of information that summarizes the key features of the essential group of 2-oxoglutarate-dependent dioxygenases and related enzymes. Given the numerous recent advances and biomedical interest in the field, this book aims to unite the latest research for those already working in the field as well as to provide an introduction for those newly approaching the topic, and for those interested in translating the basic science into medicinal and agricultural benefits. The book begins with four broad chapters that highlight critical aspects, including an overview of possible catalytic reactions, structures and mechanisms. The following seventeen chapters focus on carefully selected topics, each written by leading experts in the area. Readers will find explanations of rapidly evolving research, from the chemistry of isopenicillin N synthase to the oxidation mechanism of 5-methylcytosine in DNA by ten-eleven-translocase oxygenases.

Non-heme Iron Oxygenase Catalysts

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ISBN 13 :
Total Pages : 54 pages
Book Rating : 4.:/5 (121 download)

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Book Synopsis Non-heme Iron Oxygenase Catalysts by : Sheldon W. May

Download or read book Non-heme Iron Oxygenase Catalysts written by Sheldon W. May and published by . This book was released on 1984 with total page 54 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Non-heme Iron Oxygenase Catalysis

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (814 download)

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Book Synopsis Non-heme Iron Oxygenase Catalysis by : Sheldon W. May

Download or read book Non-heme Iron Oxygenase Catalysis written by Sheldon W. May and published by . This book was released on 1981 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Design of Bio-inspired Nonheme Iron Oxidation Catalysts

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ISBN 13 :
Total Pages : 418 pages
Book Rating : 4.:/5 (319 download)

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Book Synopsis Design of Bio-inspired Nonheme Iron Oxidation Catalysts by : Paul David Oldenburg

Download or read book Design of Bio-inspired Nonheme Iron Oxidation Catalysts written by Paul David Oldenburg and published by . This book was released on 2007 with total page 418 pages. Available in PDF, EPUB and Kindle. Book excerpt:

DNA and Histone Methylation as Cancer Targets

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Publisher : Springer
ISBN 13 : 3319597868
Total Pages : 616 pages
Book Rating : 4.3/5 (195 download)

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Book Synopsis DNA and Histone Methylation as Cancer Targets by : Atsushi Kaneda

Download or read book DNA and Histone Methylation as Cancer Targets written by Atsushi Kaneda and published by Springer. This book was released on 2017-09-04 with total page 616 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book will focus on DNA and histone methylation in epigenetics and describe how it is involved in the molecular mechanisms responsible for the development of cancer. Chapters will summarize the current knowledge of the molecular basis of DNA and histone methylation and explain how it is involved in cancer, describe the features of DNA and histone methylation associated with particular types of cancer, diagnostic/therapeutic applications, and future directions of DNA and histone methylation as cancer targets.

Bio-inspired Iron Catalysts for Hydrocarbon Oxidations

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ISBN 13 :
Total Pages : 8 pages
Book Rating : 4.:/5 (951 download)

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Book Synopsis Bio-inspired Iron Catalysts for Hydrocarbon Oxidations by :

Download or read book Bio-inspired Iron Catalysts for Hydrocarbon Oxidations written by and published by . This book was released on 2016 with total page 8 pages. Available in PDF, EPUB and Kindle. Book excerpt: Stereoselective oxidation of C-H and C=C bonds are catalyzed by nonheme iron enzymes. Inspired by these bioinorganic systems, our group has been exploring the use of nonheme iron complexes as catalysts for the oxidation of hydrocarbons using H2O2 as an environmentally friendly and atom-efficient oxidant in order to gain mechanistic insights into these novel transformations. In particular, we have focused on clarifying the nature of the high-valent iron oxidants likely to be involved in these transformations.

Mononuclear Non-heme Iron Dependent Enzymes

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Publisher : Elsevier
ISBN 13 : 0443313059
Total Pages : 348 pages
Book Rating : 4.4/5 (433 download)

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Book Synopsis Mononuclear Non-heme Iron Dependent Enzymes by :

Download or read book Mononuclear Non-heme Iron Dependent Enzymes written by and published by Elsevier. This book was released on 2024-09-01 with total page 348 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mononuclear Non-heme Iron Dependent Enzymes, Volume 703 focuses on methods for studying, characterizing, and leveraging the chemistry of mononuclear non-heme iron dependent enzymes. Chapters in this new release include Photoreduction for Rieske oxygenase chemistry, Insights into the Mechanisms of Rieske Oxygenases from Studying the Unproductive Activation of Dioxygen, Non-heme iron and 2-oxoglutarate enzymes catalyze cyclopropane and azacyclopropane formations, Obtaining precise metrics of substrate positioning in Fe(II)/2OG dependent enzymes using Hyperfine Sublevel Correlation Spectroscopy, Xe-pressurization studies for revealing substrate-entrance tunnels, and much more. Additional chapters cover A tale of two dehydrogenases involved in NADH recycling, Rieske oxygenases and/or their partner reductase proteins, Expression, assay and inhibition of 9-cis-epoxycarotenoid dioxygenase (NCED) from Solanum lycopersicum and Zea mays, Biocatalysis and non-heme iron enzymes, In vitro analysis of the three-component Rieske oxygenase cumene dioxygenase from Pseudomonas fluorescens IP01, Structure and function of carbazole 1,9a-dioxygenase, Characterization of a Mononuclear Nonheme Iron-dependent Mono-oxygenase OzmD in Oxazinomycin Biosynthesis, and much more. Provides detailed articles regarding how to study the structures and mechanisms of mononuclear non-heme iron dependent enzymes Guides readers on how to use partner proteins in non-heme iron enzyme catalysis Includes strategies to employ mononuclear non-heme iron enzymes in biocatalytic applications

High-valent Oxygen Intermediates of Mononuclear Non-heme Iron Enzymes

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (81 download)

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Book Synopsis High-valent Oxygen Intermediates of Mononuclear Non-heme Iron Enzymes by : Shaun Di Hang Wong

Download or read book High-valent Oxygen Intermediates of Mononuclear Non-heme Iron Enzymes written by Shaun Di Hang Wong and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Mononuclear non-heme iron (NHFe) enzymes catalyze a wide variety of biologically-important reactions such as hydroxylation, halogenation, desaturation, ring closure, and electrophilic aromatic substitution. The key intermediate in the catalytic cycle is the S = 2 Fe(IV)=O species, capable of abstracting an H-atom from inert C--H bonds as strong as 106 kcal/mol. The Fe(IV)=O intermediate in enzymes is transient and difficult to trap; as such, stable synthetic analogs have proven invaluable for spectroscopic elucidation of the geometric/electronic structure of the Fe(IV)=O unit and how it is activated for reactivity. Such biomimetic Fe(IV)=O model complexes can be either intermediate-spin (S = 1) or high-spin (S = 2) in contrast to the S = 2 ground state of enzyme intermediates. For an S = 1 Fe(IV)=O species, the Fe--oxo [beta] [pi]*-frontier molecular orbital (FMO) [from the combination of Fe d(xz/yz) and oxo p(x/y)] is involved in H-atom abstraction, and this FMO requires a side-on approach ([pi]-attack) to achieve maximum overlap with the substrate C--H bond. Through magnetic circular dichroism (MCD) and nuclear vibrational resonance spectroscopy (NRVS) studies, the reactivity of the S = 1 Fe(IV)=O unit has been shown to be affected by the oxo contribution in the [pi]*-FMO, where a larger oxo contribution results in greater orbital overlap (with the substrate C--H) and higher reactivity; also, the [pi]-attack pathway results in steric clashes between substrate and ligand, giving a significant steric contribution to the energy of the reaction barrier. For an S = 2 Fe(IV)=O species, the Fe--oxo [alpha] [sigma]*-FMO [Fe d(z2) and oxo p(z)] is spin-polarized (exchange-stabilized) to an energy level comparable with its [pi]*-FMO, making it accessible as a second pathway ([sigma]-attack) for reactivity. In the S = 2 Fe(IV)=O model complex ligated by TMG3tren, this [sigma]*-FMO is active but is axially hindered by the ligand, again giving a large steric contribution to the reaction barrier; however, the intrinsic electronic reaction barriers of the S = 2 [sigma]*-FMO and the S = 1 [pi]*-FMO are comparable, suggesting they are similarly active in H-atom abstraction. Furthermore, MCD excited-state spectroscopy in combination with multiconfigurational calculations on the S = 2 model reveal two different [pi]-pathways for reactivity involving Fe(III)--oxyl[p(x), [pi]] character, in addition to the [sigma]-pathway involving Fe(III)--oxyl[p(z), [sigma]] character, showing that the S = 2 Fe(IV)=O unit is activated for both [pi] and [sigma] H-atom abstraction reactivities. Finally, the S = 2 enzyme intermediate for the halogenase SyrB2 was trapped and structurally characterized by NRVS, revealing two possible 5-coordinate trigonal bipyramidal candidates with the Fe--oxo vector oriented either perpendicular or parallel to the substrate C--H bond. Importantly, this difference in orientation leads to Fe(III)--OH products oriented efficiently for different rebound reactivities -- native halogenation in the case of perpendicular orientation and non-native hydroxylation in the case of parallel orientation.

Mononuclear Non-heme Iron Dependent Enzymes Part B

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Author :
Publisher : Elsevier
ISBN 13 : 0443346488
Total Pages : 382 pages
Book Rating : 4.4/5 (433 download)

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Book Synopsis Mononuclear Non-heme Iron Dependent Enzymes Part B by :

Download or read book Mononuclear Non-heme Iron Dependent Enzymes Part B written by and published by Elsevier. This book was released on 2024-09-17 with total page 382 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mononuclear Non-heme Iron Dependent Enzymes, Volume 703 PART B focuses on methods for studying, characterizing, and leveraging the chemistry of mononuclear non-heme iron dependent enzymes. Chapters in this new release include Photoreduction for Rieske oxygenase chemistry, Insights into the Mechanisms of Rieske Oxygenases from Studying the Unproductive Activation of Dioxygen, Non-heme iron and 2-oxoglutarate enzymes catalyze cyclopropane and azacyclopropane formations, Obtaining precise metrics of substrate positioning in Fe(II)/2OG dependent enzymes using Hyperfine Sublevel Correlation Spectroscopy, Xe-pressurization studies for revealing substrate-entrance tunnels, and much more. Additional chapters cover A tale of two dehydrogenases involved in NADH recycling, Rieske oxygenases and/or their partner reductase proteins, Expression, assay and inhibition of 9-cis-epoxycarotenoid dioxygenase (NCED) from Solanum lycopersicum and Zea mays, Biocatalysis and non-heme iron enzymes, In vitro analysis of the three-component Rieske oxygenase cumene dioxygenase from Pseudomonas fluorescens IP01, Structure and function of carbazole 1,9a-dioxygenase, Characterization of a Mononuclear Nonheme Iron-dependent Mono-oxygenase OzmD in Oxazinomycin Biosynthesis, and much more. Provides detailed articles regarding how to study the structures and mechanisms of mononuclear non-heme iron dependent enzymes Guides readers on how to use partner proteins in non-heme iron enzyme catalysis Includes strategies to employ mononuclear non-heme iron enzymes in biocatalytic applications

Bio-inspired Nonheme Iron Catalysis for Olefin Oxidation - Ligand Design and Mechanistic Studies

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Publisher :
ISBN 13 :
Total Pages : 241 pages
Book Rating : 4.:/5 (86 download)

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Book Synopsis Bio-inspired Nonheme Iron Catalysis for Olefin Oxidation - Ligand Design and Mechanistic Studies by : Yan Feng

Download or read book Bio-inspired Nonheme Iron Catalysis for Olefin Oxidation - Ligand Design and Mechanistic Studies written by Yan Feng and published by . This book was released on 2011 with total page 241 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Non-heme Iron Complexes as Supramolecular Oxidation Catalysts

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Publisher :
ISBN 13 : 9789036719094
Total Pages : 175 pages
Book Rating : 4.7/5 (19 download)

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Book Synopsis Non-heme Iron Complexes as Supramolecular Oxidation Catalysts by : Marten Klopstra

Download or read book Non-heme Iron Complexes as Supramolecular Oxidation Catalysts written by Marten Klopstra and published by . This book was released on 2003 with total page 175 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Models for Non-heme Iron Containing Oxidation Enzymes

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Publisher :
ISBN 13 : 9789036712781
Total Pages : 143 pages
Book Rating : 4.7/5 (127 download)

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Book Synopsis Models for Non-heme Iron Containing Oxidation Enzymes by : Johannes Gerhardus Roelfes

Download or read book Models for Non-heme Iron Containing Oxidation Enzymes written by Johannes Gerhardus Roelfes and published by . This book was released on 2000 with total page 143 pages. Available in PDF, EPUB and Kindle. Book excerpt: