Chromatin Protocols

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Chromatin Protocols

Author : Peter B. Becker
Publisher : Springer Science & Business Media
ISBN 13 : 1592596819
Total Pages : 525 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Chromatin Protocols by : Peter B. Becker

Download or read book Chromatin Protocols written by Peter B. Becker and published by Springer Science & Business Media. This book was released on 2008-02-03 with total page 525 pages. Available in PDF, EPUB and Kindle. Book excerpt: More than 40 years after the discovery of the nucleosome as the fun- mental unit of chromatin, the multifaceted problem of how variations in ch- matin structure affect the activity of the eukaryotic genome has not been solved. However, during the past few years research on chromatin structure and fu- tion has gained considerable momentum, and impressive progress has been made at the level of concept development as well as filling in crucial detail. The structure of the nucleosome has been visualized at unprecedented reso- tion. Powerful multisubunit enzymes have been identified that alter histone/ DNA interactions in ways that expose regulatory sequences to factors initi- ing and regulating such nuclear processes as transcription. Though the imp- tance of posttranslational modifications of histones, notably their acetylation, has long been known, the finding that a number of bona fide regulators increase transcription by acetylating nucleosomes has lent new support to the old idea that the process of gene regulation is intimately related to the nature of the chromatin environment. A wealth of nonhistone proteins contribute to a continuum of structures with distinct biochemical properties and varying degrees of DNA condensation. Perhaps the most important conclusion from a large number of studies is a fresh appreciation of the dynamic nature of chromatin structure, the built-in flexibility providing the basis for regulation.

Bacterial Chromatin

Author : Remus T. Dame
Publisher : Springer Nature
ISBN 13 : 1071639307
Total Pages : 654 pages
Book Rating : 4.0/5 (716 download)

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Book Synopsis Bacterial Chromatin by : Remus T. Dame

Download or read book Bacterial Chromatin written by Remus T. Dame and published by Springer Nature. This book was released on with total page 654 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Current Protocols in Molecular Biology

Author :
Publisher :
ISBN 13 : 9780471503385
Total Pages : pages
Book Rating : 4.5/5 (33 download)

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Book Synopsis Current Protocols in Molecular Biology by :

Download or read book Current Protocols in Molecular Biology written by and published by . This book was released on with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Epigenetics Protocols

Author : Trygve O. Tollefsbol
Publisher : Springer Science & Business Media
ISBN 13 : 1592598285
Total Pages : 301 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Epigenetics Protocols by : Trygve O. Tollefsbol

Download or read book Epigenetics Protocols written by Trygve O. Tollefsbol and published by Springer Science & Business Media. This book was released on 2008-02-02 with total page 301 pages. Available in PDF, EPUB and Kindle. Book excerpt: The field of epigenetics has grown exponentially in the past decade, and a steady flow of exciting discoveries in this area has served to move it to the forefront of molecular biology. Although epigenetics may previously have been considered a peripheral science, recent advances have shown considerable progress in unraveling the many mysteries of nontraditional genetic processes. Given the fast pace of epigenetic discoveries and the groundbreaking nature of these developments, a thorough treatment of the methods in the area seems timely and appropriate and is the goal of Epigenetics Protocols. The scope of epigenetics is vast, and an exhaustive analysis of all of the techniques employed by investigators would be unrealistic. However, this TM volume of Methods in Molecular Biology covers three main areas that should be of greatest interest to epigenetics investigators: (1) techniques related to analysis of chromatin remodeling, such as histone acetylation and methylation; (2) methods in newly developed and especially promising areas of epigenetics such as telomere position effects, quantitative epigenetics, and ADP ribosylation; and (3) an updated analysis of techniques involving DNA methylation and its role in the modification, as well as the maintenance, of chromatin structure.

Yeast Protocols

Author : Wei Xiao
Publisher : Springer Science & Business Media
ISBN 13 : 1592599583
Total Pages : 389 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Yeast Protocols by : Wei Xiao

Download or read book Yeast Protocols written by Wei Xiao and published by Springer Science & Business Media. This book was released on 2008-02-03 with total page 389 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this second edition of a widely used classic laboratory manual, leading experts utilize the tremendous progress and technological advances that have occurred to create a completely new collection of not only the major basic techniques, but also advanced protocols for yeast research and for using yeast as a host to study genes from other organisms. The authors provide detailed methods for the isolation of subcellular components-including organelles and macromolecules, for the basic cellular and molecular analysis specific for yeast cells, and for the creation of conditional mutant phenotypes that lend themselves to powerful genome manipulation. Additional protocols offer advanced approaches to study genetic interactions, DNA and chromatin metabolism, gene expression, as well as the foreign genes and gene products in yeast cells.

Epigenetics Methods

Author : Trygve O Tollefsbol
Publisher : Academic Press
ISBN 13 : 0128194154
Total Pages : 740 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Epigenetics Methods by : Trygve O Tollefsbol

Download or read book Epigenetics Methods written by Trygve O Tollefsbol and published by Academic Press. This book was released on 2020-07-08 with total page 740 pages. Available in PDF, EPUB and Kindle. Book excerpt: In recent years, the field of epigenetics has grown significantly, driving new understanding of human developmental processes and disease expression, as well as advances in diagnostics and therapeutics. As the field of epigenetics continues to grow, methods and technologies have multiplied, resulting in a wide range of approaches and tools researchers might employ. Epigenetics Methods offers comprehensive instruction in methods, protocols, and experimental approaches applied in field of epigenetics. Here, across thirty-five chapters, specialists offer step-by-step overviews of methods used to study various epigenetic mechanisms, as employed in basic and translational research. Leading the reader from fundamental to more advanced methods, the book begins with thorough instruction in DNA methylation techniques and gene or locus-specific methylation analyses, followed by histone modification methods, chromatin evaluation, enzyme analyses of histone methylation, and studies of non-coding RNAs as epigenetic modulators. Recently developed techniques and technologies discussed include single-cell epigenomics, epigenetic editing, computational epigenetics, systems biology epigenetic methods, and forensic epigenetic approaches. Epigenetics methods currently in-development, and their implication for future research, are also considered in-depth. In addition, as with the wider life sciences, reproducibility across experiments, labs, and subdisciplines is a growing issue for epigenetics researchers. This volume provides consensus-driven methods instruction and overviews. Tollefsbol and contributing authors survey the range of existing methods; identify best practices, common themes, and challenges; and bring unity of approach to a diverse and ever-evolving field. - Includes contributions by leading international investigators involved in epigenetic research and clinical and therapeutic application - Integrates technology and translation with fundamental chapters on epigenetics methods, as well as chapters on more novel and advanced epigenetics methods - Written at verbal and technical levels that can be understood by scientists and students alike - Includes chapters on state-of-the-art techniques such as single-cell epigenomics, use of CRISPR/Cas9 for epigenetic editing, and epigenetics methods applied to forensics

Protocols used in Molecular Biology

Author : Sandeep Singh
Publisher : Bentham Science Publishers
ISBN 13 : 981143929X
Total Pages : 186 pages
Book Rating : 4.8/5 (114 download)

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Book Synopsis Protocols used in Molecular Biology by : Sandeep Singh

Download or read book Protocols used in Molecular Biology written by Sandeep Singh and published by Bentham Science Publishers. This book was released on 2020-01-23 with total page 186 pages. Available in PDF, EPUB and Kindle. Book excerpt: Protocols used in Molecular Biology is a compilation of several examples of molecular biology protocols. Each example is presented with a concise introduction, materials and chemicals required, a step-by-step procedure and troubleshooting tips. Information about the application of the protocol is also provided. The techniques included in this book are essential to research in the fields of proteomics, genomics, cell culture, epigenetic modification and structural biology. The protocols can also be used by clinical researchers (neuroscientists and oncologists, for example) for medical applications (diagnostics, therapeutics and multidisciplinary projects).

Toxicoepigenetics

Author : Shaun D. McCullough
Publisher : Academic Press
ISBN 13 : 0128124342
Total Pages : 430 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Toxicoepigenetics by : Shaun D. McCullough

Download or read book Toxicoepigenetics written by Shaun D. McCullough and published by Academic Press. This book was released on 2018-11-02 with total page 430 pages. Available in PDF, EPUB and Kindle. Book excerpt: Toxicoepigenetics: Core Principles and Applications examines the core aspects of epigenetics, including chromatin biology, DNA methylation, and non-coding RNA, as well as fundamental techniques and considerations for studying each of these mechanisms of epigenetic regulation. Although its integration into the field of toxicology is in its infancy, epigenetics have taken center stage in the study of diseases such as cancer, diabetes, and neurodegeneration. Increasing the presence of epigenetics in toxicological research allows for a more in-depth understanding of important aspects of toxicology such as the role of the environment and lifestyle influencing the individual susceptibility to these effects and the trans-generational transmission of these health effects and susceptibilities. Methods chapters are included to help improve efficacy and efficiency of protocols in both the laboratory and the classroom. Toxicoepigenetics: Core Principles and Applications is an essential book for researchers and academics using epigenetics in toxicology research and study. - Introduces the fundamental principles and practices for understanding the role of the epigenome in toxicology - Presents the foundation of epigenetics for toxicologists with a broad range of backgrounds - Discusses the incorporation of epigenetics and epigenomics into current toxicological studies and interpretation of epigenetic data in toxicological applications

Xenopus Protocols

Author : X. Johné Liu
Publisher : Springer Science & Business Media
ISBN 13 : 1597450006
Total Pages : 487 pages
Book Rating : 4.5/5 (974 download)

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Book Synopsis Xenopus Protocols by : X. Johné Liu

Download or read book Xenopus Protocols written by X. Johné Liu and published by Springer Science & Business Media. This book was released on 2008-02-02 with total page 487 pages. Available in PDF, EPUB and Kindle. Book excerpt: A collection of standard and cutting-edge techniques for using Xenopus oocytes and oocytes/egg extracts to reconstitute biological and cellular processes. These readily reproducible methods take advantage of the oocyte's impressive protein abundance, its striking protein translation capacity, and its breathtaking possibilities for the assembly of infectious viral particles by single cell injection of multiple RNAs. The authors focus on the versatility of frog oocytes and egg extracts in cell biology and signal transduction, and cover all the major uses of oocytes/extracts as experimental models.

The Evolving Chromatin and Transcriptional Landscapes – Emerging Methods, Tools and Techniques

Author : Jean-Philippe Lambert
Publisher : Frontiers Media SA
ISBN 13 : 2889719219
Total Pages : 157 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis The Evolving Chromatin and Transcriptional Landscapes – Emerging Methods, Tools and Techniques by : Jean-Philippe Lambert

Download or read book The Evolving Chromatin and Transcriptional Landscapes – Emerging Methods, Tools and Techniques written by Jean-Philippe Lambert and published by Frontiers Media SA. This book was released on 2022-01-03 with total page 157 pages. Available in PDF, EPUB and Kindle. Book excerpt:

DNA Microarrays, Part A: Array Platforms and Wet-Bench Protocols

Author :
Publisher : Elsevier
ISBN 13 : 0080464653
Total Pages : 506 pages
Book Rating : 4.0/5 (84 download)

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Book Synopsis DNA Microarrays, Part A: Array Platforms and Wet-Bench Protocols by :

Download or read book DNA Microarrays, Part A: Array Platforms and Wet-Bench Protocols written by and published by Elsevier. This book was released on 2011-08-19 with total page 506 pages. Available in PDF, EPUB and Kindle. Book excerpt: Modern DNA microarray technologies have evolved over the past 25 years to the point where it is now possible to take many million measurements from a single experiment. These two volumes, Parts A & B in the Methods in Enzymology series provide methods that will shepard any molecular biologist through the process of planning, performing, and publishing microarray results. Part A starts with an overview of a number of microarray platforms, both commercial and academically produced and includes wet bench protocols for performing traditional expression analysis and derivative techniques such as detection of transcription factor occupancy and chromatin status. Wet-bench protocols and troubleshooting techniques continue into Part B. These techniques are well rooted in traditional molecular biology and while they require traditional care, a researcher that can reproducibly generate beautiful Northern or Southern blots should have no difficulty generating beautiful array hybridizations. Data management is a more recent problem for most biologists. The bulk of Part B provides a range of techniques for data handling. This includes critical issues, from normalization within and between arrays, to uploading your results to the public repositories for array data, and how to integrate data from multiple sources. There are chapters in Part B for both the debutant and the expert bioinformatician. - Provides an overview of platforms - Includes experimental design and wet bench protocols - Presents statistical and data analysis methods, array databases, data visualization and meta-analysis

Methods in Cell Biology

Author :
Publisher : Academic Press
ISBN 13 : 0080859127
Total Pages : 511 pages
Book Rating : 4.0/5 (88 download)

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Book Synopsis Methods in Cell Biology by :

Download or read book Methods in Cell Biology written by and published by Academic Press. This book was released on 1977-05-23 with total page 511 pages. Available in PDF, EPUB and Kindle. Book excerpt: Methods in Cell Biology

Chromatin and Epigenetics

Author : Colin Logie
Publisher : BoD – Books on Demand
ISBN 13 : 1789844924
Total Pages : 296 pages
Book Rating : 4.7/5 (898 download)

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Book Synopsis Chromatin and Epigenetics by : Colin Logie

Download or read book Chromatin and Epigenetics written by Colin Logie and published by BoD – Books on Demand. This book was released on 2020-01-29 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genomics has gathered broad public attention since Lamarck put forward his top-down hypothesis of 'motivated change' in 1809 in his famous book "Philosophie Zoologique" and even more so since Darwin published his famous bottom-up theory of natural selection in "The Origin of Species" in 1859. The public awareness culminated in the much anticipated race to decipher the sequence of the human genome in 2002. Over all those years, it has become apparent that genomic DNA is compacted into chromatin with a dedicated 3D higher-order organization and dynamics, and that on each structural level epigenetic modifications exist. The book "Chromatin and Epigenetics" addresses current issues in the fields of epigenetics and chromatin ranging from more theoretical overviews in the first four chapters to much more detailed methodologies and insights into diagnostics and treatments in the following chapters. The chapters illustrate in their depth and breadth that genetic information is stored on all structural and dynamical levels within the nucleus with corresponding modifications of functional relevance. Thus, only an integrative systems approach allows to understand, treat, and manipulate the holistic interplay of genotype and phenotype creating functional genomes. The book chapters therefore contribute to this general perspective, not only opening opportunities for a true universal view on genetic information but also being key for a general understanding of genomes, their function, as well as life and evolution in general.

Microfluidic Methods for Molecular Biology

Author : Chang Lu
Publisher : Springer
ISBN 13 : 3319300199
Total Pages : 382 pages
Book Rating : 4.3/5 (193 download)

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Book Synopsis Microfluidic Methods for Molecular Biology by : Chang Lu

Download or read book Microfluidic Methods for Molecular Biology written by Chang Lu and published by Springer. This book was released on 2016-05-14 with total page 382 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers the state-of-the-art research on molecular biology assays and molecular techniques enabled or enhanced by microfluidic platforms. Topics covered include microfluidic methods for cellular separations and single cell studies, droplet-based approaches to study protein expression and forensics, and microfluidic in situ hybridization for RNA analysis. Key molecular biology studies using model organisms are reviewed in detail. This is an ideal book for students and researchers in the microfluidics and molecular biology fields as well as engineers working in the biotechnology industry. This book also: Reviews exhaustively the latest techniques for single-cell genetic, epigenetic, metabolomic, and proteomic analysis Illustrates microfluidic approaches for inverse metabolic engineering, as well as analysis of circulating exosomes Broadens readers’ understanding of microfluidics convection-based PCR technology, microfluidic RNA-seq, and microfluidics for robust mobile diagnostics

Immunocytochemical Methods and Protocols

Author : Lorette C. Javois
Publisher : Springer Science & Business Media
ISBN 13 : 1592592139
Total Pages : 928 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Immunocytochemical Methods and Protocols by : Lorette C. Javois

Download or read book Immunocytochemical Methods and Protocols written by Lorette C. Javois and published by Springer Science & Business Media. This book was released on 2008-02-02 with total page 928 pages. Available in PDF, EPUB and Kindle. Book excerpt: Lorette Javois' timely new 2nd edition revises and updates her widely acclaimed collection of step-by-step immunocytochemical methods, one that is now used in many biological and biomedical research programs. The methods are designed for researchers and clinicians who wish to visualize molecules in plant or animal embryos, tissue sections, cells, or organelles. In addition to cutting-edge protocols for purifying and preparing antibodies, light microscopic analysis, confocal microscopy, FACS, and electron microscopy, this revised edition contains many new methods for applying immunocytochemical techniques in the clinical laboratory and in combination with in situ hybridization.

Integrin Protocols

Author : Anthony R. Howlett
Publisher : Springer Science & Business Media
ISBN 13 : 159259249X
Total Pages : 296 pages
Book Rating : 4.5/5 (925 download)

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Book Synopsis Integrin Protocols by : Anthony R. Howlett

Download or read book Integrin Protocols written by Anthony R. Howlett and published by Springer Science & Business Media. This book was released on 2008-02-03 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: In Integrin Protocols, Anthony Howlett and a distinguished panel of experimentalists describe in detail a series of cutting-edge methods for dissecting the role of integrins in biological processes. This wide-ranging collection includes protocols for the analysis of integrin expression-at both the RNA and protein levels-and for elucidating the functional properties of integrins, including those at the cellular level. Each method provides step-by-step instructions for easy reproducibility, along with extensive notes about potential pitfalls, and tips on how to avoid failure. The emphasis is always on the practical steps necessary for experimental success and robust results. Offering powerful tools for understanding how integrins regulate cell growth, differentiation, migration, invasion, angiogenesis, and apoptosis, as well as how abnormalities of integrin expression and function may be implicated in various pathologic conditions, Integrin Protocols constitutes a gold-standard collection of techniques for both new and experienced investigators of the molecular and cellular basis of cardiovascular disease, inflammatory disorders, and cancer.

Arabidopsis Protocols, 2nd Edition

Author : Julio Salinas
Publisher : Springer Science & Business Media
ISBN 13 : 1597450030
Total Pages : 461 pages
Book Rating : 4.5/5 (974 download)

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Book Synopsis Arabidopsis Protocols, 2nd Edition by : Julio Salinas

Download or read book Arabidopsis Protocols, 2nd Edition written by Julio Salinas and published by Springer Science & Business Media. This book was released on 2008-02-04 with total page 461 pages. Available in PDF, EPUB and Kindle. Book excerpt: For several decades, Arabidopsis thaliana has been the organism of choice in the laboratories of many plant geneticists, physiologists, developmental biologists, and biochemists around the world. During this time, a huge amount of knowledge has been acquired on the biology of this plant species, which has resulted in the development of molecular tools that account for much more efficient research. The significance that Arabidopsis would attain in biological research may have been difficult to foresee in the 1980s, when its use in the laboratory started. In the meantime, it has become the model plant organism, much the same way as Drosophila, Caenorhabditis, or mouse have for animal systems. Today, it is difficult to envision research at the cutting edge of plant biology without the use of Arabidopsis. Since the first edition of Arabidopsis Protocols appeared, new developments have fostered an impressive advance in plant biology that prompted us to prepare Arabidopsis Protocols, Second Edition. Completion of the Arabidopsis genome sequence offered for the first time the opportunity to have in hand all of the genetic information required for studying plant function. In addition, the development of whole systems approaches that allow global analysis of gene expression and protein and metabolite dynamics has encouraged scientists to explore new scenarios that are extending the limits of our knowledge.