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Applications Of Statistical Physics And Information Theory To The Analysis Of Dna Sequences
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Book Synopsis Information, Physics, and Computation by : Marc Mézard
Download or read book Information, Physics, and Computation written by Marc Mézard and published by Oxford University Press. This book was released on 2009-01-22 with total page 584 pages. Available in PDF, EPUB and Kindle. Book excerpt: A very active field of research is emerging at the frontier of statistical physics, theoretical computer science/discrete mathematics, and coding/information theory. This book sets up a common language and pool of concepts, accessible to students and researchers from each of these fields.
Book Synopsis Dissertation Abstracts International by :
Download or read book Dissertation Abstracts International written by and published by . This book was released on 2006 with total page 764 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Information Theory and Statistical Learning by : Frank Emmert-Streib
Download or read book Information Theory and Statistical Learning written by Frank Emmert-Streib and published by Springer Science & Business Media. This book was released on 2009 with total page 443 pages. Available in PDF, EPUB and Kindle. Book excerpt: This interdisciplinary text offers theoretical and practical results of information theoretic methods used in statistical learning. It presents a comprehensive overview of the many different methods that have been developed in numerous contexts.
Book Synopsis Invitation to Protein Sequence Analysis Through Probability and Information by : Daniel J. Graham
Download or read book Invitation to Protein Sequence Analysis Through Probability and Information written by Daniel J. Graham and published by CRC Press. This book was released on 2019-02-06 with total page 245 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book explores the remarkable information correspondences and probability structures of proteins. Correspondences are pervasive in biochemistry and bioinformatics: proteins share homologies, folding patterns, and mechanisms. Probability structures are just as paramount: folded state graphics reflect Angstrom-scale maps of electron density. The author explores protein sequences (primary structures), both individually and in sets (systems) with the help of probability and information tools. This perspective will enhance the reader’s knowledge of how an important class of molecules is designed and put to task in natural systems, and how we can approach class members in hands-on ways.
Book Synopsis Select Topics of Econophysics by : Amit Sinha
Download or read book Select Topics of Econophysics written by Amit Sinha and published by Walter de Gruyter GmbH & Co KG. This book was released on 2024-11-04 with total page 484 pages. Available in PDF, EPUB and Kindle. Book excerpt: Economics requires understanding and analyzing forces that bring buyers and sellers to a market place who then negotiate exchanges of goods and services based on a mutually agreeable price. Economists have their own method of modeling whereby models are first conceived of some notion of economic and financial thinking, before being empirically tested, and anomalies are then recognized if the observed data is inconsistent with the hypothetical underpinning. This is in inherent contradiction with the modeling approaches of physicists who develop their theories, principle and laws after observing empirical data. The awareness that physics can enlighten the understanding of human behavior (and thus economics), and the interest of physicists in applying their training and models to understanding the complexities of finance and economics, led to the creation of a new field of study appropriately termed as Econophysics. Selected Topics on Econophysics is a collection of essays on topics that enhance and enrich our understanding of economic modeling when the same rigor of modelling used by physicists is brought to developing financial and economic theories. These articles include discussions on modeling bitcoins, stock index modeling using geometric Brownian motion, agent-based modeling, wealth distribution modeling, as well as modeling related to fractal regression, and chaotic processes. This interdisciplinary book will interest researchers, graduate students and professionals in the fields of economics, finance as well as physics.
Book Synopsis Simulation and the Monte Carlo Method by : Reuven Y. Rubinstein
Download or read book Simulation and the Monte Carlo Method written by Reuven Y. Rubinstein and published by John Wiley & Sons. This book was released on 2016-10-21 with total page 470 pages. Available in PDF, EPUB and Kindle. Book excerpt: This accessible new edition explores the major topics in Monte Carlo simulation that have arisen over the past 30 years and presents a sound foundation for problem solving Simulation and the Monte Carlo Method, Third Edition reflects the latest developments in the field and presents a fully updated and comprehensive account of the state-of-the-art theory, methods and applications that have emerged in Monte Carlo simulation since the publication of the classic First Edition over more than a quarter of a century ago. While maintaining its accessible and intuitive approach, this revised edition features a wealth of up-to-date information that facilitates a deeper understanding of problem solving across a wide array of subject areas, such as engineering, statistics, computer science, mathematics, and the physical and life sciences. The book begins with a modernized introduction that addresses the basic concepts of probability, Markov processes, and convex optimization. Subsequent chapters discuss the dramatic changes that have occurred in the field of the Monte Carlo method, with coverage of many modern topics including: Markov Chain Monte Carlo, variance reduction techniques such as importance (re-)sampling, and the transform likelihood ratio method, the score function method for sensitivity analysis, the stochastic approximation method and the stochastic counter-part method for Monte Carlo optimization, the cross-entropy method for rare events estimation and combinatorial optimization, and application of Monte Carlo techniques for counting problems. An extensive range of exercises is provided at the end of each chapter, as well as a generous sampling of applied examples. The Third Edition features a new chapter on the highly versatile splitting method, with applications to rare-event estimation, counting, sampling, and optimization. A second new chapter introduces the stochastic enumeration method, which is a new fast sequential Monte Carlo method for tree search. In addition, the Third Edition features new material on: • Random number generation, including multiple-recursive generators and the Mersenne Twister • Simulation of Gaussian processes, Brownian motion, and diffusion processes • Multilevel Monte Carlo method • New enhancements of the cross-entropy (CE) method, including the “improved” CE method, which uses sampling from the zero-variance distribution to find the optimal importance sampling parameters • Over 100 algorithms in modern pseudo code with flow control • Over 25 new exercises Simulation and the Monte Carlo Method, Third Edition is an excellent text for upper-undergraduate and beginning graduate courses in stochastic simulation and Monte Carlo techniques. The book also serves as a valuable reference for professionals who would like to achieve a more formal understanding of the Monte Carlo method. Reuven Y. Rubinstein, DSc, was Professor Emeritus in the Faculty of Industrial Engineering and Management at Technion-Israel Institute of Technology. He served as a consultant at numerous large-scale organizations, such as IBM, Motorola, and NEC. The author of over 100 articles and six books, Dr. Rubinstein was also the inventor of the popular score-function method in simulation analysis and generic cross-entropy methods for combinatorial optimization and counting. Dirk P. Kroese, PhD, is a Professor of Mathematics and Statistics in the School of Mathematics and Physics of The University of Queensland, Australia. He has published over 100 articles and four books in a wide range of areas in applied probability and statistics, including Monte Carlo methods, cross-entropy, randomized algorithms, tele-traffic c theory, reliability, computational statistics, applied probability, and stochastic modeling.
Book Synopsis Exact Methods in the Study of Language and Text by : Peter Grzybek
Download or read book Exact Methods in the Study of Language and Text written by Peter Grzybek and published by Walter de Gruyter. This book was released on 2011-12-22 with total page 790 pages. Available in PDF, EPUB and Kindle. Book excerpt: Founding Editor: Gabriel Altmann The series Quantitative Linguistics publishes books on all aspects of quantitative methods and models in linguistics, text analysis and related research fields. Specifically, the scope of the series covers the whole spectrum of theoretical and empirical research, ultimately striving for an exact mathematical formulation and empirical testing of hypotheses: observation and description of linguistic data, application of methods and models, discussion of methodological and epistemological issues, modelling of language and text phenomena.
Book Synopsis Statistical Mechanics by : James Sethna
Download or read book Statistical Mechanics written by James Sethna and published by OUP Oxford. This book was released on 2006-04-07 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: In each generation, scientists must redefine their fields: abstracting, simplifying and distilling the previous standard topics to make room for new advances and methods. Sethna's book takes this step for statistical mechanics - a field rooted in physics and chemistry whose ideas and methods are now central to information theory, complexity, and modern biology. Aimed at advanced undergraduates and early graduate students in all of these fields, Sethna limits his main presentation to the topics that future mathematicians and biologists, as well as physicists and chemists, will find fascinating and central to their work. The amazing breadth of the field is reflected in the author's large supply of carefully crafted exercises, each an introduction to a whole field of study: everything from chaos through information theory to life at the end of the universe.
Book Synopsis Recurrence Quantification Analysis by : Charles L. Webber, Jr.
Download or read book Recurrence Quantification Analysis written by Charles L. Webber, Jr. and published by Springer. This book was released on 2014-07-31 with total page 426 pages. Available in PDF, EPUB and Kindle. Book excerpt: The analysis of recurrences in dynamical systems by using recurrence plots and their quantification is still an emerging field. Over the past decades recurrence plots have proven to be valuable data visualization and analysis tools in the theoretical study of complex, time-varying dynamical systems as well as in various applications in biology, neuroscience, kinesiology, psychology, physiology, engineering, physics, geosciences, linguistics, finance, economics, and other disciplines. This multi-authored book intends to comprehensively introduce and showcase recent advances as well as established best practices concerning both theoretical and practical aspects of recurrence plot based analysis. Edited and authored by leading researcher in the field, the various chapters address an interdisciplinary readership, ranging from theoretical physicists to application-oriented scientists in all data-providing disciplines.
Book Synopsis Structural Analysis of DNA Sequences by : Armin Schmitt
Download or read book Structural Analysis of DNA Sequences written by Armin Schmitt and published by . This book was released on 1995 with total page 144 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Comparative Gene Finding by : Marina Axelson-Fisk
Download or read book Comparative Gene Finding written by Marina Axelson-Fisk and published by Springer. This book was released on 2015-04-13 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents a guide to building computational gene finders, and describes the state of the art in computational gene finding methods, with a focus on comparative approaches. Fully updated and expanded, this new edition examines next-generation sequencing (NGS) technology. The book also discusses conditional random fields, enhancing the broad coverage of topics spanning probability theory, statistics, information theory, optimization theory and numerical analysis. Features: introduces the fundamental terms and concepts in the field; discusses algorithms for single-species gene finding, and approaches to pairwise and multiple sequence alignments, then describes how the strengths in both areas can be combined to improve the accuracy of gene finding; explores the gene features most commonly captured by a computational gene model, and explains the basics of parameter training; illustrates how to implement a comparative gene finder; examines NGS techniques and how to build a genome annotation pipeline.
Book Synopsis Mathematical Lives by : CLAUDIO BARTOCCI
Download or read book Mathematical Lives written by CLAUDIO BARTOCCI and published by Springer Science & Business Media. This book was released on 2010-10-01 with total page 239 pages. Available in PDF, EPUB and Kindle. Book excerpt: Steps forward in mathematics often reverberate in other scientific disciplines, and give rise to innovative conceptual developments or find surprising technological applications. This volume brings to the forefront some of the proponents of the mathematics of the twentieth century, who have put at our disposal new and powerful instruments for investigating the reality around us. The portraits present people who have impressive charisma and wide-ranging cultural interests, who are passionate about defending the importance of their own research, are sensitive to beauty, and attentive to the social and political problems of their times. What we have sought to document is mathematics’ central position in the culture of our day. Space has been made not only for the great mathematicians but also for literary texts, including contributions by two apparent interlopers, Robert Musil and Raymond Queneau, for whom mathematical concepts represented a valuable tool for resolving the struggle between ‘soul and precision.’
Book Synopsis Applied Mathematical Analysis and Computations I by : Divine Wanduku
Download or read book Applied Mathematical Analysis and Computations I written by Divine Wanduku and published by Springer Nature. This book was released on with total page 401 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Neural Information Processing by : Nikil R. Pal
Download or read book Neural Information Processing written by Nikil R. Pal and published by Springer. This book was released on 2004-10-29 with total page 1397 pages. Available in PDF, EPUB and Kindle. Book excerpt: It is our great pleasure to welcome you to the 11th International Conference on Neural Information Processing (ICONIP 2004) to be held in Calcutta. ICONIP 2004 is organized jointly by the Indian Statistical Institute (ISI) and Jadavpur University (JU). We are con?dent that ICONIP 2004, like the previous conf- ences in this series,will providea forum for fruitful interactionandthe exchange of ideas between the participants coming from all parts of the globe. ICONIP 2004 covers all major facets of computational intelligence, but, of course, with a primary emphasis on neural networks. We are sure that this meeting will be enjoyable academically and otherwise. We are thankful to the track chairs and the reviewers for extending their support in various forms to make a sound technical program. Except for a few cases, where we could get only two review reports, each submitted paper was reviewed by at least three referees, and in some cases the revised versions were againcheckedbythereferees. Wehad470submissionsanditwasnotaneasytask for us to select papers for a four-day conference. Because of the limited duration of the conference, based on the review reports we selected only about 40% of the contributed papers. Consequently, it is possible that some good papers are left out. We again express our sincere thanks to all referees for accomplishing a great job. In addition to 186 contributed papers, the proceedings includes two plenary presentations, four invited talks and 18 papers in four special sessions. The proceedings is organized into 26 coherent topical groups.
Book Synopsis Biological Sequence Analysis by : Richard Durbin
Download or read book Biological Sequence Analysis written by Richard Durbin and published by Cambridge University Press. This book was released on 1998-04-23 with total page 372 pages. Available in PDF, EPUB and Kindle. Book excerpt: Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and probabilistic evolutionary models for inferring phylogenies of sequences from different organisms. This book gives a unified, up-to-date and self-contained account, with a Bayesian slant, of such methods, and more generally to probabilistic methods of sequence analysis. Written by an interdisciplinary team of authors, it aims to be accessible to molecular biologists, computer scientists, and mathematicians with no formal knowledge of the other fields, and at the same time present the state-of-the-art in this new and highly important field.
Book Synopsis Mathematics of DNA Structure, Function and Interactions by : Craig John Benham
Download or read book Mathematics of DNA Structure, Function and Interactions written by Craig John Benham and published by Springer Science & Business Media. This book was released on 2010-04-29 with total page 359 pages. Available in PDF, EPUB and Kindle. Book excerpt: Propelled by the success of the sequencing of the human and many related genomes, molecular and cellular biology has delivered significant scientific breakthroughs. Mathematics (broadly defined) continues to play a major role in this effort, helping to discover the secrets of life by working collaboratively with bench biologists, chemists and physicists. Because of its outstanding record of interdisciplinary research and training, the IMA was an ideal venue for the 2007-2008 IMA thematic year on Mathematics of Molecular and Cellular Biology. The kickoff event for this thematic year was a tutorial on Mathematics of Nucleic Acids, followed by the workshop Mathematics of Molecular and Cellular Biology, held September 15--21 at the IMA. This volume is dedicated to the memory of Nicholas R. Cozzarelli, a dynamic leader who fostered research and training at the interface between mathematics and molecular biology. It contains a personal remembrance of Nick Cozzarelli, plus 15 papers contributed by workshop speakers. The papers give an overview of state-of-the-art mathematical approaches to the understanding of DNA structure and function, and the interaction of DNA with proteins that mediate vital life processes.
Book Synopsis Mathematical Methods in Modern Complexity Science by : Dimitri Volchenkov
Download or read book Mathematical Methods in Modern Complexity Science written by Dimitri Volchenkov and published by Springer Nature. This book was released on 2022-03-14 with total page 202 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents recent developments in nonlinear and complex systems. It provides recent theoretic developments and new techniques based on a nonlinear dynamical systems approach that can be used to model and understand complex behavior in nonlinear dynamical systems. It covers information theory, relativistic chaotic dynamics, data analysis, relativistic chaotic dynamics, solvability issues in integro-differential equations, and inverse problems for parabolic differential equations, synchronization and chaotic transient. Presents new concepts for understanding and modeling complex systems
