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Applications Of Discrete Mathematics For Understanding Dynamics Of Synapses And Networks In Neuroscience
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Book Synopsis Applications of Discrete Mathematics for Understanding Dynamics of Synapses and Networks in Neuroscience by : Caitlyn M. Parmelee
Download or read book Applications of Discrete Mathematics for Understanding Dynamics of Synapses and Networks in Neuroscience written by Caitlyn M. Parmelee and published by . This book was released on 2016 with total page 131 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical modeling has broad applications in neuroscience whether we are modeling the dynamics of a single synapse or the dynamics of an entire network of neurons. In Part I, we model vesicle replenishment and release at the photoreceptor synapse to better understand how visual information is processed. In Part II, we explore a simple model of neural networks with the goal of discovering how network structure shapes the behavior of the network.
Book Synopsis Mathematical Foundations of Neuroscience by : G. Bard Ermentrout
Download or read book Mathematical Foundations of Neuroscience written by G. Bard Ermentrout and published by Springer Science & Business Media. This book was released on 2010-07-08 with total page 434 pages. Available in PDF, EPUB and Kindle. Book excerpt: Arising from several courses taught by the authors, this book provides a needed overview illustrating how dynamical systems and computational analysis have been used in understanding the types of models that come out of neuroscience.
Book Synopsis Algebraic and Combinatorial Computational Biology by : Raina Robeva
Download or read book Algebraic and Combinatorial Computational Biology written by Raina Robeva and published by Academic Press. This book was released on 2018-10-08 with total page 434 pages. Available in PDF, EPUB and Kindle. Book excerpt: Algebraic and Combinatorial Computational Biology introduces students and researchers to a panorama of powerful and current methods for mathematical problem-solving in modern computational biology. Presented in a modular format, each topic introduces the biological foundations of the field, covers specialized mathematical theory, and concludes by highlighting connections with ongoing research, particularly open questions. The work addresses problems from gene regulation, neuroscience, phylogenetics, molecular networks, assembly and folding of biomolecular structures, and the use of clustering methods in biology. A number of these chapters are surveys of new topics that have not been previously compiled into one unified source. These topics were selected because they highlight the use of technique from algebra and combinatorics that are becoming mainstream in the life sciences. Integrates a comprehensive selection of tools from computational biology into educational or research programs Emphasizes practical problem-solving through multiple exercises, projects and spinoff computational simulations Contains scalable material for use in undergraduate and graduate-level classes and research projects Introduces the reader to freely-available professional software Supported by illustrative datasets and adaptable computer code
Download or read book Neurodynamics written by Stephen Coombes and published by Springer Nature. This book was released on 2023-05-09 with total page 513 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is about the dynamics of neural systems and should be suitable for those with a background in mathematics, physics, or engineering who want to see how their knowledge and skill sets can be applied in a neurobiological context. No prior knowledge of neuroscience is assumed, nor is advanced understanding of all aspects of applied mathematics! Rather, models and methods are introduced in the context of a typical neural phenomenon and a narrative developed that will allow the reader to test their understanding by tackling a set of mathematical problems at the end of each chapter. The emphasis is on mathematical- as opposed to computational-neuroscience, though stresses calculation above theorem and proof. The book presents necessary mathematical material in a digestible and compact form when required for specific topics. The book has nine chapters, progressing from the cell to the tissue, and an extensive set of references. It includes Markov chain models for ions, differential equations for single neuron models, idealised phenomenological models, phase oscillator networks, spiking networks, and integro-differential equations for large scale brain activity, with delays and stochasticity thrown in for good measure. One common methodological element that arises throughout the book is the use of techniques from nonsmooth dynamical systems to form tractable models and make explicit progress in calculating solutions for rhythmic neural behaviour, synchrony, waves, patterns, and their stability. This book was written for those with an interest in applied mathematics seeking to expand their horizons to cover the dynamics of neural systems. It is suitable for a Masters level course or for postgraduate researchers starting in the field of mathematical neuroscience.
Book Synopsis Introduction to Neural Dynamics and Signal Transmission Delay by : Jianhong Wu
Download or read book Introduction to Neural Dynamics and Signal Transmission Delay written by Jianhong Wu and published by Walter de Gruyter. This book was released on 2001 with total page 200 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the design of a neural network, either for biological modeling, cognitive simulation, numerical computation or engineering applications, it is important to investigate the network's computational performance which is usually described by the long-term behaviors, called dynamics, of the model equations. The purpose of this book is to give an introduction to the mathematical modeling and analysis of networks of neurons from the viewpoint of dynamical systems.
Book Synopsis Mathematics for Neuroscientists by : Fabrizio Gabbiani
Download or read book Mathematics for Neuroscientists written by Fabrizio Gabbiani and published by Academic Press. This book was released on 2017-02-04 with total page 630 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematics for Neuroscientists, Second Edition, presents a comprehensive introduction to mathematical and computational methods used in neuroscience to describe and model neural components of the brain from ion channels to single neurons, neural networks and their relation to behavior. The book contains more than 200 figures generated using Matlab code available to the student and scholar. Mathematical concepts are introduced hand in hand with neuroscience, emphasizing the connection between experimental results and theory. Fully revised material and corrected text Additional chapters on extracellular potentials, motion detection and neurovascular coupling Revised selection of exercises with solutions More than 200 Matlab scripts reproducing the figures as well as a selection of equivalent Python scripts
Book Synopsis Lectures in Supercomputational Neuroscience by : Peter Graben
Download or read book Lectures in Supercomputational Neuroscience written by Peter Graben and published by Springer. This book was released on 2007-10-19 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written from the physicist’s perspective, this book introduces computational neuroscience with in-depth contributions by system neuroscientists. The authors set forth a conceptual model for complex networks of neurons that incorporates important features of the brain. The computational implementation on supercomputers, discussed in detail, enables you to adapt the algorithm for your own research. Worked-out examples of applications are provided.
Book Synopsis Dynamics of Neural Networks by : Michel J.A.M. van Putten
Download or read book Dynamics of Neural Networks written by Michel J.A.M. van Putten and published by Springer Nature. This book was released on 2020-12-18 with total page 259 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book treats essentials from neurophysiology (Hodgkin–Huxley equations, synaptic transmission, prototype networks of neurons) and related mathematical concepts (dimensionality reductions, equilibria, bifurcations, limit cycles and phase plane analysis). This is subsequently applied in a clinical context, focusing on EEG generation, ischaemia, epilepsy and neurostimulation. The book is based on a graduate course taught by clinicians and mathematicians at the Institute of Technical Medicine at the University of Twente. Throughout the text, the author presents examples of neurological disorders in relation to applied mathematics to assist in disclosing various fundamental properties of the clinical reality at hand. Exercises are provided at the end of each chapter; answers are included. Basic knowledge of calculus, linear algebra, differential equations and familiarity with MATLAB or Python is assumed. Also, students should have some understanding of essentials of (clinical) neurophysiology, although most concepts are summarized in the first chapters. The audience includes advanced undergraduate or graduate students in Biomedical Engineering, Technical Medicine and Biology. Applied mathematicians may find pleasure in learning about the neurophysiology and clinic essentials applications. In addition, clinicians with an interest in dynamics of neural networks may find this book useful, too.
Book Synopsis Neurodynamics of Cognition and Consciousness by : Leonid I. Perlovsky
Download or read book Neurodynamics of Cognition and Consciousness written by Leonid I. Perlovsky and published by Springer. This book was released on 2007-08-26 with total page 369 pages. Available in PDF, EPUB and Kindle. Book excerpt: Experimental evidence in humans and other mammalians indicates that complex neurodynamics is crucial for the emergence of higher-level intelligence. Dynamical neural systems with encoding in limit cycle and non-convergent attractors have gained increasing popularity in the past decade. The role of synchronization, desynchronization, and intermittent synchronization on cognition has been studied extensively by various authors, in particular by authors contributing to the present volume. This book addresses dynamical aspects of brain functions and cognition.
Download or read book Brain Dynamics written by Hermann Haken and published by Springer Science & Business Media. This book was released on 2007-12-22 with total page 331 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is an excellent introduction for graduate students and nonspecialists to the field of mathematical and computational neurosciences. The book approaches the subject via pulsed-coupled neural networks, which have at their core the lighthouse and integrate-and-fire models. These allow for highly flexible modeling of realistic synaptic activity, synchronization and spatio-temporal pattern formation. The more advanced pulse-averaged equations are discussed.
Book Synopsis Neuronal Stochastic Variability: Influences on Spiking Dynamics and Network Activity by : Mark D. McDonnell
Download or read book Neuronal Stochastic Variability: Influences on Spiking Dynamics and Network Activity written by Mark D. McDonnell and published by Frontiers Media SA. This book was released on 2016-07-18 with total page 158 pages. Available in PDF, EPUB and Kindle. Book excerpt: Stochastic fluctuations are intrinsic to and unavoidable at every stage of neural dynamics. For example, ion channels undergo random conformational changes, neurotransmitter release at synapses is discrete and probabilistic, and neural networks are embedded in spontaneous background activity. The mathematical and computational tool sets contributing to our understanding of stochastic neural dynamics have expanded rapidly in recent years. New theories have emerged detailing the dynamics and computational power of the balanced state in recurrent networks. At the cellular level, novel stochastic extensions to the classical Hodgkin-Huxley model have enlarged our understanding of neuronal dynamics and action potential initiation. Analytical methods have been developed that allow for the calculation of the firing statistics of simplified phenomenological integrate-and-fire models, taking into account adaptation currents or temporal correlations of the noise. This Research Topic is focused on identified physiological/internal noise sources and mechanisms. By "internal", we mean variability that is generated by intrinsic biophysical processes. This includes noise at a range of scales, from ion channels to synapses to neurons to networks. The contributions in this Research Topic introduce innovative mathematical analysis and/or computational methods that relate to empirical measures of neural activity and illuminate the functional role of intrinsic noise in the brain.
Book Synopsis Observed Brain Dynamics by : Partha Mitra
Download or read book Observed Brain Dynamics written by Partha Mitra and published by Oxford University Press. This book was released on 2007-12-07 with total page 404 pages. Available in PDF, EPUB and Kindle. Book excerpt: The biomedical sciences have recently undergone revolutionary change, due to the ability to digitize and store large data sets. In neuroscience, the data sources include measurements of neural activity measured using electrode arrays, EEG and MEG, brain imaging data from PET, fMRI, and optical imaging methods. Analysis, visualization, and management of these time series data sets is a growing field of research that has become increasingly important both for experimentalists and theorists interested in brain function. Written by investigators who have played an important role in developing the subject and in its pedagogical exposition, the current volume addresses the need for a textbook in this interdisciplinary area. The book is written for a broad spectrum of readers ranging from physical scientists, mathematicians, and statisticians wishing to educate themselves about neuroscience, to biologists who would like to learn time series analysis methods in particular and refresh their mathematical and statistical knowledge in general, through self-pedagogy. It may also be used as a supplement for a quantitative course in neurobiology or as a textbook for instruction on neural signal processing. The first part of the book contains a set of essays meant to provide conceptual background which are not technical and shall be generally accessible. Salient features include the adoption of an active perspective of the nervous system, an emphasis on function, and a brief survey of different theoretical accounts in neuroscience. The second part is the longest in the book, and contains a refresher course in mathematics and statistics leading up to time series analysis techniques. The third part contains applications of data analysis techniques to the range of data sources indicated above (also available as part of the Chronux data analysis platform from http://chronux.org), and the fourth part contains special topics.
Download or read book Neural Fields written by Stephen Coombes and published by Springer. This book was released on 2014-07-09 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Neural field theory has a long-standing tradition in the mathematical and computational neurosciences. Beginning almost 50 years ago with seminal work by Griffiths and culminating in the 1970ties with the models of Wilson and Cowan, Nunez and Amari, this important research area experienced a renaissance during the 1990ties by the groups of Ermentrout, Robinson, Bressloff, Wright and Haken. Since then, much progress has been made in both, the development of mathematical and numerical techniques and in physiological refinement und understanding. In contrast to large-scale neural network models described by huge connectivity matrices that are computationally expensive in numerical simulations, neural field models described by connectivity kernels allow for analytical treatment by means of methods from functional analysis. Thus, a number of rigorous results on the existence of bump and wave solutions or on inverse kernel construction problems are nowadays available. Moreover, neural fields provide an important interface for the coupling of neural activity to experimentally observable data, such as the electroencephalogram (EEG) or functional magnetic resonance imaging (fMRI). And finally, neural fields over rather abstract feature spaces, also called dynamic fields, found successful applications in the cognitive sciences and in robotics. Up to now, research results in neural field theory have been disseminated across a number of distinct journals from mathematics, computational neuroscience, biophysics, cognitive science and others. There is no comprehensive collection of results or reviews available yet. With our proposed book Neural Field Theory, we aim at filling this gap in the market. We received consent from some of the leading scientists in the field, who are willing to write contributions for the book, among them are two of the founding-fathers of neural field theory: Shun-ichi Amari and Jack Cowan.
Book Synopsis Neuronal Dynamics by : Wulfram Gerstner
Download or read book Neuronal Dynamics written by Wulfram Gerstner and published by Cambridge University Press. This book was released on 2014-07-24 with total page 591 pages. Available in PDF, EPUB and Kindle. Book excerpt: This solid introduction uses the principles of physics and the tools of mathematics to approach fundamental questions of neuroscience.
Book Synopsis Chaotic Dynamics of Fractional Discrete Time Systems by : Vignesh Dhakshinamoorthy
Download or read book Chaotic Dynamics of Fractional Discrete Time Systems written by Vignesh Dhakshinamoorthy and published by CRC Press. This book was released on 2024-09-06 with total page 188 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book reviews the application of discrete fractional operators in diverse fields such as biological and chemical reactions, as well as chaotic systems, demonstrating their applications in physics. The dynamical analysis is carried out using equilibrium points of the system for studying their stability properties and the chaotic behaviors are illustrated with the help of bifurcation diagrams and Lyapunov exponents. The book is divided into three parts. Part I deals with the application of discrete fractional operators in chemical reaction-based systems with biological significance. Two different chemical reaction models are analysed- one being disproportionation of glucose, which plays an important role in human physiology and the other is the Lengyel – Epstein chemical model. Chaotic behavior of the systems is studied and the synchronization of the system is performed. Part II covers the analysis of biological systems like tumor immune system and neuronal models by introducing memristor based flux control. The memductance functions are considered as quadratic, periodic, and exponential functions. The final part of the book reviews the complex form of the Rabinovich-Fabrikant system which describes physical systems with strong nonlinearity exhibiting unusual behavior.
Book Synopsis Wavelets in Neuroscience by : Alexander E. Hramov
Download or read book Wavelets in Neuroscience written by Alexander E. Hramov and published by Springer. This book was released on 2014-08-15 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book examines theoretical and applied aspects of wavelet analysis in neurophysics, describing in detail different practical applications of the wavelet theory in the areas of neurodynamics and neurophysiology and providing a review of fundamental work that has been carried out in these fields over the last decade. Chapters 1 and 2 introduce and review the relevant foundations of neurophysics and wavelet theory, respectively, pointing on one hand to the various current challenges in neuroscience and introducing on the other the mathematical techniques of the wavelet transform in its two variants (discrete and continuous) as a powerful and versatile tool for investigating the relevant neuronal dynamics. Chapter 3 then analyzes results from examining individual neuron dynamics and intracellular processes. The principles for recognizing neuronal spikes from extracellular recordings and the advantages of using wavelets to address these issues are described and combined with approaches based on wavelet neural networks (chapter 4). The features of time-frequency organization of EEG signals are then extensively discussed, from theory to practical applications (chapters 5 and 6). Lastly, the technical details of automatic diagnostics and processing of EEG signals using wavelets are examined (chapter 7). The book will be a useful resource for neurophysiologists and physicists familiar with nonlinear dynamical systems and data processing, as well as for graduate students specializing in the corresponding areas.
Book Synopsis An Introduction to Modeling Neuronal Dynamics by : Christoph Börgers
Download or read book An Introduction to Modeling Neuronal Dynamics written by Christoph Börgers and published by Springer. This book was released on 2017-04-25 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is intended as a text for a one-semester course on Mathematical and Computational Neuroscience for upper-level undergraduate and beginning graduate students of mathematics, the natural sciences, engineering, or computer science. An undergraduate introduction to differential equations is more than enough mathematical background. Only a slim, high school-level background in physics is assumed, and none in biology. Topics include models of individual nerve cells and their dynamics, models of networks of neurons coupled by synapses and gap junctions, origins and functions of population rhythms in neuronal networks, and models of synaptic plasticity. An extensive online collection of Matlab programs generating the figures accompanies the book.
