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Algorithms For Analysis Inference And Control Of Boolean Networks
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Book Synopsis Algorithms for Analysis, Inference, and Control of Boolean Networks by : Akutsu Tatsuya
Download or read book Algorithms for Analysis, Inference, and Control of Boolean Networks written by Akutsu Tatsuya and published by World Scientific Publishing Company. This book was released on 2018-03-23 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Algorithms For Analysis, Inference, And Control Of Boolean Networks by : Tatsuya Akutsu
Download or read book Algorithms For Analysis, Inference, And Control Of Boolean Networks written by Tatsuya Akutsu and published by World Scientific. This book was released on 2018-02-14 with total page 227 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Boolean network (BN) is a mathematical model of genetic networks and other biological networks. Although extensive studies have been done on BNs from a viewpoint of complex systems, not so many studies have been undertaken from a computational viewpoint. This book presents rigorous algorithmic results on important computational problems on BNs, which include inference of a BN, detection of singleton and periodic attractors in a BN, and control of a BN. This book also presents algorithmic results on fundamental computational problems on probabilistic Boolean networks and a Boolean model of metabolic networks. Although most contents of the book are based on the work by the author and collaborators, other important computational results and techniques are also reviewed or explained.
Book Synopsis Probabilistic Boolean Networks by : Ilya Shmulevich
Download or read book Probabilistic Boolean Networks written by Ilya Shmulevich and published by SIAM. This book was released on 2010-01-21 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Book Synopsis Algebraic Biology by : Katsuhisa Horimoto
Download or read book Algebraic Biology written by Katsuhisa Horimoto and published by Springer Science & Business Media. This book was released on 2008-07-18 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.
Book Synopsis Algorithms for Computational Biology by : Jesper Jansson
Download or read book Algorithms for Computational Biology written by Jesper Jansson and published by Springer. This book was released on 2018-06-20 with total page 157 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 5th InternationalConference on Algorithms for Computational Biology, AlCoB 2018, held in Hong Kong, China, in June 2018. The 11 full papers presented together with 1 invited paper were carefully reviewed and selected from 20 submissions. They are organized in the following topical sections: Phylogenetics, Sequence Rearrangement and Analysis, Systems Biology and Other Biological Processes.
Book Synopsis Discrete-Time and Discrete-Space Dynamical Systems by : Kuize Zhang
Download or read book Discrete-Time and Discrete-Space Dynamical Systems written by Kuize Zhang and published by Springer. This book was released on 2019-08-06 with total page 226 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discrete-Time and Discrete-Space Dynamical Systems provides a systematic characterization of the similarities and differences of several types of discrete-time and discrete-space dynamical systems, including: Boolean control networks; nondeterministic finite-transition systems; finite automata; labelled Petri nets; and cellular automata. The book's perspective is primarily based on topological properties though it also employs semitensor-product and graph-theoretic methods where appropriate. It presents a series of fundamental results: invertibility, observability, detectability, reversiblity, etc., with applications to systems biology. Academic researchers with backgrounds in applied mathematics, engineering or computer science and practising engineers working with discrete-time and discrete-space systems will find this book a helpful source of new understanding for this increasingly important class of systems. The basic results to be found within are of fundamental importance for further study of related problems such as automated synthesis and safety control in cyber-physical systems using formal methods.
Download or read book Boolean Systems written by Serban E. Vlad and published by Elsevier. This book was released on 2023-01-06 with total page 458 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Boolean functions may be iterated either asynchronously, when their coordinates are computed independently of each other, or synchronously, when their coordinates are computed at the same time. In Boolean Systems: Topics in Asynchronicity, a book addressed to mathematicians and computer scientists interested in Boolean systems and their use in modelling, author Serban E. Vlad presents a consistent and original mathematical theory of the discrete-time Boolean asynchronous systems. The purpose of the book is to set forth the concepts of such a theory, resulting from the synchronous Boolean system theory and mostly from the synchronous real system theory, by analogy, and to indicate the way in which known synchronous deterministic concepts generate new asynchronous nondeterministic concepts. The reader will be introduced to the dependence on the initial conditions, periodicity, path-connectedness, topological transitivity, and chaos. A property of major importance is invariance, which is present in five versions. In relation to it, the reader will study the maximal invariant subsets, the minimal invariant supersets, the minimal invariant subsets, connectedness, separation, the basins of attraction, and attractors. The stability of the systems and their time-reversal symmetry end the topics that refer to the systems without input. The rest of the book is concerned with input systems. The most consistent chapters of this part of the book refer to the fundamental operating mode and to the combinational systems (systems without feedback). The chapter Wires, Gates, and Flip-Flops presents a variety of applications. The first appendix addresses the issue of continuous time, and the second one sketches the important theory of Daizhan Cheng, which is put in relation to asynchronicity. The third appendix is a bridge between asynchronicity and the symbolic dynamics of Douglas Lind and Brian Marcus. - Presents a consistent and original theory of the discrete-time Boolean asynchronous systems, which are useful for mathematicians and computer scientists interested in Boolean Networks, dynamical systems, and modeling. - Studies the flows and equations of evolution, nullclines, dependence on initial conditions, periodicity, path-connectedness, topological transitivity, chaos, nonwandering points, invariance, connectedness, and separation, as well as the basins of attraction, attractors, stability, and time-reversal symmetry. - Explains the fundamental operating mode of the input systems and the combinational systems (systems without feedback). - Includes a chapter of applications of the Boolean systems and their modeling techniques. - Makes use of the unbounded delay model of computation of the Boolean functions.
Book Synopsis Algebraic Biology by : Katsuhisa Horimoto
Download or read book Algebraic Biology written by Katsuhisa Horimoto and published by Springer. This book was released on 2008-07-30 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains the proceedings of the Third International Conference on Algebraic Biology (AB 2008). Jointly organized by the National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, and the Research Institute for Symbolic Computation (RISC), Hagenberg, Austria, it was held from July 31 to August 2, 2008 in the Castle of Hagenberg. Algebraic biology is an interdisciplinary forum for research on all aspects of applying symbolic computation in biology. The ?rst conference on algebraic biology (AB 2005) was held November 28–30, 2005 in Tokyo, the second during July 2–4, 2007 in Hagenberg. The AB conference series is intended as a bridge between life sciences and symbolic computation: On the one hand, new insights inbiologyarefoundbypowerfulsymbolicmethods;ontheotherhand,biological problems suggestnew algebraicstructures andalgorithms.While this pro?le has been established in the previous proceedings, the papers in the present volume demonstrate the continuous growth of algebraic biology. We received 27 submissions from 14 countries (Australia, Austria, Canada, China, Colombia, France, Germany, Italy, Japan, Norway, Russia, Switzerland, UK, USA), and 14 papers were accepted for publication. Each submission was assigned to at least three ProgramCommittee members, who carefully reviewed the papers, in many cases with the help of external referees. The reviews were discussedby the ProgramCommittee for oneweekvia the EasyChairconference management system.
Book Synopsis Application Of Omics, Ai And Blockchain In Bioinformatics Research by : Jeffrey J P Tsai
Download or read book Application Of Omics, Ai And Blockchain In Bioinformatics Research written by Jeffrey J P Tsai and published by World Scientific. This book was released on 2019-10-14 with total page 207 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the increasing availability of omics data and mounting evidence of the usefulness of computational approaches to tackle multi-level data problems in bioinformatics and biomedical research in this post-genomics era, computational biology has been playing an increasingly important role in paving the way as basis for patient-centric healthcare.Two such areas are: (i) implementing AI algorithms supported by biomedical data would deliver significant benefits/improvements towards the goals of precision medicine (ii) blockchain technology will enable medical doctors to securely and privately build personal healthcare records, and identify the right therapeutic treatments and predict the progression of the diseases.A follow-up in the publication of our book Computation Methods with Applications in Bioinformatics Analysis (2017), topics in this volume include: clinical bioinformatics, omics-based data analysis, Artificial Intelligence (AI), blockchain, big data analytics, drug discovery, RNA-seq analysis, tensor decomposition and Boolean network.
Book Synopsis Analysis and Control of Boolean Networks by : Daizhan Cheng
Download or read book Analysis and Control of Boolean Networks written by Daizhan Cheng and published by Springer Science & Business Media. This book was released on 2010-11-23 with total page 474 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology – fixed points, cycles, transient times and basins of attractors – can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.
Download or read book Boolean Functions written by Yves Crama and published by Cambridge University Press. This book was released on 2011-05-16 with total page 711 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written by prominent experts in the field, this monograph provides the first comprehensive, unified presentation of the structural, algorithmic and applied aspects of the theory of Boolean functions. The book focuses on algebraic representations of Boolean functions, especially disjunctive and conjunctive normal form representations. This framework looks at the fundamental elements of the theory (Boolean equations and satisfiability problems, prime implicants and associated short representations, dualization), an in-depth study of special classes of Boolean functions (quadratic, Horn, shellable, regular, threshold, read-once functions and their characterization by functional equations) and two fruitful generalizations of the concept of Boolean functions (partially defined functions and pseudo-Boolean functions). Several topics are presented here in book form for the first time. Because of the depth and breadth and its emphasis on algorithms and applications, this monograph will have special appeal for researchers and graduate students in discrete mathematics, operations research, computer science, engineering and economics.
Book Synopsis Multi-Agent Systems by : Dorothea Baumeister
Download or read book Multi-Agent Systems written by Dorothea Baumeister and published by Springer Nature. This book was released on 2022-12-10 with total page 462 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes thoroughly refereed and revised selected papers from the proceedings of 19th European Conference on Multi-Agent Systems, EUMAS 2022, held in Düsseldorf, Germany, during September 14–16, 2022. The 23 full papers included in this book were carefully reviewed and selected from 36 submissions. The book also contains 6 short summaries of talks from PhD students at the PhD day. The papers deal with current topics in the research and development of multi-agent systems.
Book Synopsis Logical Modeling of Biological Systems by : Luis Fariñas del Cerro
Download or read book Logical Modeling of Biological Systems written by Luis Fariñas del Cerro and published by John Wiley & Sons. This book was released on 2014-08-08 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: Systems Biology is the systematic study of the interactions between the components of a biological system and studies how these interactions give rise to the function and behavior of the living system. Through this, a life process is to be understood as a whole system rather than the collection of the parts considered separately. Systems Biology is therefore more than just an emerging field: it represents a new way of thinking about biology with a dramatic impact on the way that research is performed. The logical approach provides an intuitive method to provide explanations based on an expressive relational language. This book covers various aspects of logical modeling of biological systems, bringing together 10 recent logic-based approaches to Systems Biology by leading scientists. The chapters cover the biological fields of gene regulatory networks, signaling networks, metabolic pathways, molecular interaction and network dynamics, and show logical methods for these domains based on propositional and first-order logic, logic programming, answer set programming, temporal logic, Boolean networks, Petri nets, process hitting, and abductive and inductive logic programming. It provides an excellent guide for all scientists, biologists, bioinformaticians, and engineers, who are interested in logic-based modeling of biological systems, and the authors hope that new scientists will be encouraged to join this exciting scientific endeavor.
Book Synopsis Algorithms for Decision Making by : Mykel J. Kochenderfer
Download or read book Algorithms for Decision Making written by Mykel J. Kochenderfer and published by MIT Press. This book was released on 2022-08-16 with total page 701 pages. Available in PDF, EPUB and Kindle. Book excerpt: A broad introduction to algorithms for decision making under uncertainty, introducing the underlying mathematical problem formulations and the algorithms for solving them. Automated decision-making systems or decision-support systems—used in applications that range from aircraft collision avoidance to breast cancer screening—must be designed to account for various sources of uncertainty while carefully balancing multiple objectives. This textbook provides a broad introduction to algorithms for decision making under uncertainty, covering the underlying mathematical problem formulations and the algorithms for solving them. The book first addresses the problem of reasoning about uncertainty and objectives in simple decisions at a single point in time, and then turns to sequential decision problems in stochastic environments where the outcomes of our actions are uncertain. It goes on to address model uncertainty, when we do not start with a known model and must learn how to act through interaction with the environment; state uncertainty, in which we do not know the current state of the environment due to imperfect perceptual information; and decision contexts involving multiple agents. The book focuses primarily on planning and reinforcement learning, although some of the techniques presented draw on elements of supervised learning and optimization. Algorithms are implemented in the Julia programming language. Figures, examples, and exercises convey the intuition behind the various approaches presented.
Book Synopsis An Introduction to the Analysis of Algorithms by : Michael Soltys
Download or read book An Introduction to the Analysis of Algorithms written by Michael Soltys and published by World Scientific. This book was released on 2012 with total page 211 pages. Available in PDF, EPUB and Kindle. Book excerpt: A successor to the first edition, this updated and revised book is a great companion guide for students and engineers alike, specifically software engineers who design reliable code. While succinct, this edition is mathematically rigorous, covering the foundations of both computer scientists and mathematicians with interest in algorithms. Besides covering the traditional algorithms of Computer Science such as Greedy, Dynamic Programming and Divide & Conquer, this edition goes further by exploring two classes of algorithms that are often overlooked: Randomised and Online algorithms with emphasis placed on the algorithm itself. The coverage of both fields are timely as the ubiquity of Randomised algorithms are expressed through the emergence of cryptography while Online algorithms are essential in numerous fields as diverse as operating systems and stock market predictions. While being relatively short to ensure the essentiality of content, a strong focus has been placed on self-containment, introducing the idea of pre/post-conditions and loop invariants to readers of all backgrounds. Containing programming exercises in Python, solutions will also be placed on the book's website.
Book Synopsis Boolean Models and Methods in Mathematics, Computer Science, and Engineering by : Yves Crama
Download or read book Boolean Models and Methods in Mathematics, Computer Science, and Engineering written by Yves Crama and published by Cambridge University Press. This book was released on 2010-06-28 with total page 781 pages. Available in PDF, EPUB and Kindle. Book excerpt: A collection of papers written by prominent experts that examine a variety of advanced topics related to Boolean functions and expressions.
Book Synopsis Algorithms, Architectures and Information Systems Security by : Bhargab B. Bhattacharya
Download or read book Algorithms, Architectures and Information Systems Security written by Bhargab B. Bhattacharya and published by World Scientific. This book was released on 2009 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains articles written by leading researchers in the fields of algorithms, architectures, and information systems security. The first five chapters address several challenging geometric problems and related algorithms. These topics have major applications in pattern recognition, image analysis, digital geometry, surface reconstruction, computer vision and in robotics. The next five chapters focus on various optimization issues in VLSI design and test architectures, and in wireless networks. The last six chapters comprise scholarly articles on information systems security covering privacy issues, access control, enterprise and network security, and digital image forensics.
