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A Model Based Framework For High Throughput Genomic Data Enhancement
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Download or read book Bioinformatics written by Zoé Lacroix and published by Academic Press. This book was released on 2003-07-18 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: The heart of the book lies in the collaboration efforts of eight distinct bioinformatics teams that describe their own unique approaches to data integration and interoperability. Each system receives its own chapter where the lead contributors provide precious insight into the specific problems being addressed by the system, why the particular architecture was chosen, and details on the system's strengths and weaknesses. In closing, the editors provide important criteria for evaluating these systems that bioinformatics professionals will find valuable. * Provides a clear overview of the state-of-the-art in data integration and interoperability in genomics, highlighting a variety of systems and giving insight into the strengths and weaknesses of their different approaches.-
Book Synopsis High-Throughput Field Phenotyping to Advance Precision Agriculture and Enhance Genetic Gain, Volume II by : Andreas Hund
Download or read book High-Throughput Field Phenotyping to Advance Precision Agriculture and Enhance Genetic Gain, Volume II written by Andreas Hund and published by Frontiers Media SA. This book was released on 2024-03-01 with total page 161 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Research Topic is part of the High-Throughput Field Phenotyping to Advance Precision Agriculture and Enhance Genetic Gain series. The discipline of “High Throughput Field Phenotyping” (HTFP) has gained momentum in the last decade. HTFP includes a wide range of disciplines such as plant science, agronomy, remote sensing, and genetics; as well as biochemistry, imaging, computation, agricultural engineering, and robotics. High throughput technologies have substantially increased our ability to monitor and quantify field experiments and breeding nurseries at multiple scales. HTFP technology can not only rapidly and cost-effectively replace tedious and subjective ratings in the field, but can also unlock the potential of new, latent phenotypes representing underlying biological function. These advances have also provided the ability to follow crop growth and development across seasons at high and previously inaccessible spatial and temporal resolutions. By combining these data with measurements of all environmental factors affecting plant growth and yield (“Envirotyping”), genotypic-specific reaction norms and phenotypic plasticity may be elucidated.
Book Synopsis Enhanced biological mechanism study, drug discovery and individualized medicine with single-cell multiomics data and integrative analysis by : Panwen Wang
Download or read book Enhanced biological mechanism study, drug discovery and individualized medicine with single-cell multiomics data and integrative analysis written by Panwen Wang and published by Frontiers Media SA. This book was released on 2023-07-20 with total page 126 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Evolution of Translational Omics by : Institute of Medicine
Download or read book Evolution of Translational Omics written by Institute of Medicine and published by National Academies Press. This book was released on 2012-09-13 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Technologies collectively called omics enable simultaneous measurement of an enormous number of biomolecules; for example, genomics investigates thousands of DNA sequences, and proteomics examines large numbers of proteins. Scientists are using these technologies to develop innovative tests to detect disease and to predict a patient's likelihood of responding to specific drugs. Following a recent case involving premature use of omics-based tests in cancer clinical trials at Duke University, the NCI requested that the IOM establish a committee to recommend ways to strengthen omics-based test development and evaluation. This report identifies best practices to enhance development, evaluation, and translation of omics-based tests while simultaneously reinforcing steps to ensure that these tests are appropriately assessed for scientific validity before they are used to guide patient treatment in clinical trials.
Book Synopsis Computational Genomics with R by : Altuna Akalin
Download or read book Computational Genomics with R written by Altuna Akalin and published by CRC Press. This book was released on 2020-12-16 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data analysis techniques in genomics. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. The text provides accessible information and explanations, always with the genomics context in the background. This also contains practical and well-documented examples in R so readers can analyze their data by simply reusing the code presented. As the field of computational genomics is interdisciplinary, it requires different starting points for people with different backgrounds. For example, a biologist might skip sections on basic genome biology and start with R programming, whereas a computer scientist might want to start with genome biology. After reading: You will have the basics of R and be able to dive right into specialized uses of R for computational genomics such as using Bioconductor packages. You will be familiar with statistics, supervised and unsupervised learning techniques that are important in data modeling, and exploratory analysis of high-dimensional data. You will understand genomic intervals and operations on them that are used for tasks such as aligned read counting and genomic feature annotation. You will know the basics of processing and quality checking high-throughput sequencing data. You will be able to do sequence analysis, such as calculating GC content for parts of a genome or finding transcription factor binding sites. You will know about visualization techniques used in genomics, such as heatmaps, meta-gene plots, and genomic track visualization. You will be familiar with analysis of different high-throughput sequencing data sets, such as RNA-seq, ChIP-seq, and BS-seq. You will know basic techniques for integrating and interpreting multi-omics datasets. Altuna Akalin is a group leader and head of the Bioinformatics and Omics Data Science Platform at the Berlin Institute of Medical Systems Biology, Max Delbrück Center, Berlin. He has been developing computational methods for analyzing and integrating large-scale genomics data sets since 2002. He has published an extensive body of work in this area. The framework for this book grew out of the yearly computational genomics courses he has been organizing and teaching since 2015.
Book Synopsis High-Throughput Field Phenotyping to Advance Precision Agriculture and Enhance Genetic Gain by : Urs Schmidhalter
Download or read book High-Throughput Field Phenotyping to Advance Precision Agriculture and Enhance Genetic Gain written by Urs Schmidhalter and published by Frontiers Media SA. This book was released on 2021-08-10 with total page 399 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Computational Neurosurgery by : Antonio Di Ieva
Download or read book Computational Neurosurgery written by Antonio Di Ieva and published by Springer Nature. This book was released on with total page 561 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Advances in Bioinformatics and Computational Biology by : Osmar Norberto de Souza
Download or read book Advances in Bioinformatics and Computational Biology written by Osmar Norberto de Souza and published by Springer. This book was released on 2011-07-21 with total page 93 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 6th Brazilian Symposium on Bioinformatics, BSB 2011, held in Brasília, Brazil, in August 2011. The 8 full papers and 4 extended abstracts presented were carefully peer-reviewed and selected for inclusion in this book. The BSB topics of interest cover many areas of bioinformatics that range from theoretical aspects of problems in bioinformatics to applications in molecular biology, biochemistry, genetics, and associated subjects.
Book Synopsis Biomedical Index to PHS-supported Research by :
Download or read book Biomedical Index to PHS-supported Research written by and published by . This book was released on 1993 with total page 1400 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Hi-C Data Analysis by : Silvio Bicciato
Download or read book Hi-C Data Analysis written by Silvio Bicciato and published by Humana. This book was released on 2022-09-04 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume details a comprehensive set of methods and tools for Hi-C data processing, analysis, and interpretation. Chapters cover applications of Hi-C to address a variety of biological problems, with a specific focus on state-of-the-art computational procedures adopted for the data analysis. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Hi-C Data Analysis: Methods and Protocols aims to help computational and molecular biologists working in the field of chromatin 3D architecture and transcription regulation.
Download or read book The Alfalfa Genome written by Long-Xi Yu and published by Springer Nature. This book was released on 2021-07-17 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is the first comprehensive compilation of deliberations on whole genome sequencing of the diploid and tetraploid alfalfa genomes including sequence assembly, gene annotation, and comparative genomics with the model legume genome, functional genomics, and genomics of important agronomic characters. Other chapters describe the genetic diversity and germplasm collections of alfalfa, as well as development of genetic markers and genome-wide association and genomic selection for economical important traits, genome editing, genomics, and breeding targets to address current and future needs. Altogether, the book contains about 300 pages over 16 chapters authored by globally reputed experts on the relevant field in this crop. This book is useful to the students, teachers, and scientists in the academia and relevant private companies interested in genetics, breeding, pathology, physiology, molecular genetics and breeding, biotechnology, and structural and functional genomics. The work is also useful to seed and forage industries.
Book Synopsis Weighted Network Analysis by : Steve Horvath
Download or read book Weighted Network Analysis written by Steve Horvath and published by Springer Science & Business Media. This book was released on 2011-04-30 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: High-throughput measurements of gene expression and genetic marker data facilitate systems biologic and systems genetic data analysis strategies. Gene co-expression networks have been used to study a variety of biological systems, bridging the gap from individual genes to biologically or clinically important emergent phenotypes.
Book Synopsis Transformations Selected Works of G.B. Olson on Materials, Microstrucutre, and Design by : C.E. Campbell
Download or read book Transformations Selected Works of G.B. Olson on Materials, Microstrucutre, and Design written by C.E. Campbell and published by ASM International. This book was released on 2017-10-01 with total page 569 pages. Available in PDF, EPUB and Kindle. Book excerpt: ASM International and The Minerals, Metals and Materials Society (TMS) have collaborated to present a collection of the selected works of Dr. Greg B. Olson in honor of his 70th birthday in 2017. This collection highlights his influential contributions to the understanding of martensite transformations and the development and application of a systems design approach to materials. Part I: Martensite, with an Introduction by Sir Harry Bhadeshia, emphasizes Dr. Olson's work to develop a dislocation theory for martensite transformations, to improve the understanding of the statistical nature of martensite nucleation, and to expand use of quantitative microscopy to characterize phase transformations. Part II: Materials Design, with an Introduction by Dr. Charles Kuehmann, focuses on the application of a systems design approach to materials and the development of integrated computational design curriculum for undergraduate education. Part II includes several examples of the systems design approach to a variety of applications. The papers chosen for this collection were selected by the editors with input from Dr. Olson.
Book Synopsis Prospects and challenges for the implementation of HTS genetic methods in fisheries research surveys and stock assessments. by : Fran Saborido-Rey
Download or read book Prospects and challenges for the implementation of HTS genetic methods in fisheries research surveys and stock assessments. written by Fran Saborido-Rey and published by Frontiers Media SA. This book was released on 2023-08-02 with total page 214 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Rediscovery of Genetic and Genomic Resources for Future Food Security by : Romesh Kumar Salgotra
Download or read book Rediscovery of Genetic and Genomic Resources for Future Food Security written by Romesh Kumar Salgotra and published by Springer Nature. This book was released on 2020-01-28 with total page 376 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes how the latest genomic resources techniques can be efficiently used in plant breeding programmes to achieve food security in the future. It also shares insights on how to utilize the untapped and unexplored genetic diversity of wild species, wild relatives and landraces for crop improvement. Moreover, the book offers an impressive array of balanced analyses, fresh ideas and perspectives, and thoughtful and realistic proposals regarding the sustainable utilization of plant genetic resources with modern biotechnological techniques. The first book to address the importance of plant genetics and genomic resources for food security, it brings together a group of plant breeders and biotechnologists to investigate the use of genomic resources techniques in plant breeding programmes. Providing essential information on the efficient utilization of genomic resources in precision breeding, it offers a valuable asset for undergraduate and graduate students, teachers and professionals engaged in related fields.
Book Synopsis Genetics, breeding and engineering to enhance oil quality and yield by : Hongbo Chao
Download or read book Genetics, breeding and engineering to enhance oil quality and yield written by Hongbo Chao and published by Frontiers Media SA. This book was released on 2023-08-31 with total page 158 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Clinical Applications for Next-Generation Sequencing by : Urszula Demkow
Download or read book Clinical Applications for Next-Generation Sequencing written by Urszula Demkow and published by Academic Press. This book was released on 2015-09-10 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: Clinical Applications for Next Generation Sequencing provides readers with an outstanding postgraduate resource to learn about the translational use of NGS in clinical environments. Rooted in both medical genetics and clinical medicine, the book fills the gap between state-of-the-art technology and evidence-based practice, providing an educational opportunity for users to advance patient care by transferring NGS to the needs of real-world patients. The book builds an interface between genetic laboratory staff and clinical health workers to not only improve communication, but also strengthen cooperation. Users will find valuable tactics they can use to build a systematic framework for understanding the role of NGS testing in both common and rare diseases and conditions, from prenatal care, like chromosomal abnormalities, up to advanced age problems like dementia. - Fills the gap between state-of-the-art technology and evidence-based practice - Provides an educational opportunity which advances patient care through the transfer of NGS to real-world patient assessment - Promotes a practical tool that clinicians can apply directly to patient care - Includes a systematic framework for understanding the role of NGS testing in many common and rare diseases - Presents evidence regarding the important role of NGS in current diagnostic strategies
