The Pangenome

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Publisher : Springer Nature
ISBN 13 : 3030382818
Total Pages : 311 pages
Book Rating : 4.0/5 (33 download)

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Book Synopsis The Pangenome by : Hervé Tettelin

Download or read book The Pangenome written by Hervé Tettelin and published by Springer Nature. This book was released on 2020-04-30 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.

The American Cranberry

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Publisher :
ISBN 13 : 9780813514918
Total Pages : 420 pages
Book Rating : 4.5/5 (149 download)

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Book Synopsis The American Cranberry by : Paul Eck

Download or read book The American Cranberry written by Paul Eck and published by . This book was released on 1990-01-01 with total page 420 pages. Available in PDF, EPUB and Kindle. Book excerpt: .

Plant Physiological Ecology

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Publisher : Springer Science & Business Media
ISBN 13 : 0387783415
Total Pages : 624 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis Plant Physiological Ecology by : Hans Lambers

Download or read book Plant Physiological Ecology written by Hans Lambers and published by Springer Science & Business Media. This book was released on 2008-10-08 with total page 624 pages. Available in PDF, EPUB and Kindle. Book excerpt: Box 9E. 1 Continued FIGURE 2. The C–S–R triangle model (Grime 1979). The strategies at the three corners are C, competiti- winning species; S, stress-tolerating s- cies; R,ruderalspecies. Particular species can engage in any mixture of these three primary strategies, and the m- ture is described by their position within the triangle. comment briefly on some other dimensions that Grime’s (1977) triangle (Fig. 2) (see also Sects. 6. 1 are not yet so well understood. and 6. 3 of Chapter 7 on growth and allocation) is a two-dimensional scheme. A C—S axis (Com- tition-winning species to Stress-tolerating spe- Leaf Economics Spectrum cies) reflects adaptation to favorable vs. unfavorable sites for plant growth, and an R- Five traits that are coordinated across species are axis (Ruderal species) reflects adaptation to leaf mass per area (LMA), leaf life-span, leaf N disturbance. concentration, and potential photosynthesis and dark respiration on a mass basis. In the five-trait Trait-Dimensions space,79%ofallvariation worldwideliesalonga single main axis (Fig. 33 of Chapter 2A on photo- A recent trend in plant strategy thinking has synthesis; Wright et al. 2004). Species with low been trait-dimensions, that is, spectra of varia- LMA tend to have short leaf life-spans, high leaf tion with respect to measurable traits. Compared nutrient concentrations, and high potential rates of mass-based photosynthesis. These species with category schemes, such as Raunkiaer’s, trait occur at the ‘‘quick-return’’ end of the leaf e- dimensions have the merit of capturing cont- nomics spectrum.

Plant Systems Biology

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Publisher : Springer Science & Business Media
ISBN 13 : 376437439X
Total Pages : 362 pages
Book Rating : 4.7/5 (643 download)

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Book Synopsis Plant Systems Biology by : Sacha Baginsky

Download or read book Plant Systems Biology written by Sacha Baginsky and published by Springer Science & Business Media. This book was released on 2007-06-25 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume aims to provide a timely view of the state-of-the-art in systems biology. The editors take the opportunity to define systems biology as they and the contributing authors see it, and this will lay the groundwork for future studies. The volume is well-suited to both students and researchers interested in the methods of systems biology. Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism.

Genetics and Genomics of the Brassicaceae

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Publisher : Springer Science & Business Media
ISBN 13 : 1441971181
Total Pages : 675 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis Genetics and Genomics of the Brassicaceae by : Renate Schmidt

Download or read book Genetics and Genomics of the Brassicaceae written by Renate Schmidt and published by Springer Science & Business Media. This book was released on 2010-12-03 with total page 675 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Genetics and Genomics of the Brassicaceae provides a review of this important family (commonly termed the mustard family, or Cruciferae). The family contains several cultivated species, including radish, rocket, watercress, wasabi and horseradish, in addition to the vegetable and oil crops of the Brassica genus. There are numerous further species with great potential for exploitation in 21st century agriculture, particularly as sources of bioactive chemicals. These opportunities are reviewed, in the context of the Brassicaceae in agriculture. More detailed descriptions are provided of the genetics of the cultivated Brassica crops, including both the species producing most of the brassica vegetable crops (B. rapa and B. oleracea) and the principal species producing oilseed crops (B. napus and B. juncea). The Brassicaceae also include important “model” plant species. Most prominent is Arabidopsis thaliana, the first plant species to have its genome sequenced. Natural genetic variation is reviewed for A. thaliana, as are the genetics of the closely related A. lyrata and of the genus Capsella. Self incompatibility is widespread in the Brassicaceae, and this subject is reviewed. Interest arising from both the commercial value of crop species of the Brassicaceae and the importance of Arabidopsis thaliana as a model species, has led to the development of numerous resources to support research. These are reviewed, including germplasm and genomic library resources, and resources for reverse genetics, metabolomics, bioinformatics and transformation. Molecular studies of the genomes of species of the Brassicaceae revealed extensive genome duplication, indicative of multiple polyploidy events during evolution. In some species, such as Brassica napus, there is evidence of multiple rounds of polyploidy during its relatively recent evolution, thus the Brassicaceae represent an excellent model system for the study of the impacts of polyploidy and the subsequent process of diploidisation, whereby the genome stabilises. Sequence-level characterization of the genomes of Arabidopsis thaliana and Brassica rapa are presented, along with summaries of comparative studies conducted at both linkage map and sequence level, and analysis of the structural and functional evolution of resynthesised polyploids, along with a description of the phylogeny and karyotype evolution of the Brassicaceae. Finally, some perspectives of the editors are presented. These focus upon the Brassicaceae species as models for studying genome evolution following polyploidy, the impact of advances in genome sequencing technology, prospects for future transcriptome analysis and upcoming model systems.

Beneficial Plant-Bacterial Interactions

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Publisher : Springer Nature
ISBN 13 : 303044368X
Total Pages : 390 pages
Book Rating : 4.0/5 (34 download)

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Book Synopsis Beneficial Plant-Bacterial Interactions by : Bernard R. Glick

Download or read book Beneficial Plant-Bacterial Interactions written by Bernard R. Glick and published by Springer Nature. This book was released on 2020-06-08 with total page 390 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a straightforward and easy-to-understand overview of beneficial plant-bacterial interactions. It features a wealth of unique illustrations to clarify the text, and each chapter includes study questions that highlight the important points, as well as references to key experiments. Since the publication of the first edition of Beneficial Plant-Bacterial Interactions, in 2015, there has been an abundance of new discoveries in this area, and in recent years, scientists around the globe have begun to develop a relatively detailed understanding of many of the mechanisms used by bacteria that facilitate plant growth and development. This knowledge is gradually becoming an integral component of modern agricultural practice, with more and more plant growth-promoting bacterial strains being commercialized and used successfully in countries throughout the world. In addition, as the world’s population continues to grow, the pressure for increased food production will intensify, while at the same time, environmental concerns, mean that environmentally friendly methods of food production will need to replace many traditional agricultural practices such as the use of potentially dangerous chemicals. The book, intended for students, explores the fundamentals of this new paradigm in agriculture, horticulture, and environmental cleanup.

Rhizosphere Engineering

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Publisher : Academic Press
ISBN 13 : 0323885950
Total Pages : 566 pages
Book Rating : 4.3/5 (238 download)

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Book Synopsis Rhizosphere Engineering by : Ramesh Chandra Dubey

Download or read book Rhizosphere Engineering written by Ramesh Chandra Dubey and published by Academic Press. This book was released on 2022-02-15 with total page 566 pages. Available in PDF, EPUB and Kindle. Book excerpt: Rhizosphere Engineering is a guide to applying environmentally sound agronomic practices to improve crop yield while also protecting soil resources. Focusing on the potential and positive impacts of appropriate practices, the book includes the use of beneficial microbes, nanotechnology and metagenomics. Developing and applying techniques that not only enhance yield, but also restore the quality of soil and water using beneficial microbes such as Bacillus, Pseudomonas, vesicular-arbuscular mycorrhiza (VAM) fungi and others are covered, along with new information on utilizing nanotechnology, quorum sensing and other technologies to further advance the science. Designed to fill the gap between research and application, this book is written for advanced students, researchers and those seeking real-world insights for improving agricultural production. - Explores the potential benefits of optimized rhizosphere - Includes metagenomics and their emerging importance - Presents insights into the use of biosurfactants

An Introduction to Ecological Genomics

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Publisher : Oxford University Press
ISBN 13 : 0199594686
Total Pages : 374 pages
Book Rating : 4.1/5 (995 download)

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Book Synopsis An Introduction to Ecological Genomics by : Nico M. van Straalen

Download or read book An Introduction to Ecological Genomics written by Nico M. van Straalen and published by Oxford University Press. This book was released on 2012 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: The authors also provide a comparative survey of the properties of genomes (genome size, gene families, synteny, and polymorphism) for prokaryotes as well as the main eukaryotic models.

Plant Communication from an Ecological Perspective

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Publisher : Springer Science & Business Media
ISBN 13 : 3642121624
Total Pages : 255 pages
Book Rating : 4.6/5 (421 download)

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Book Synopsis Plant Communication from an Ecological Perspective by : František Baluška

Download or read book Plant Communication from an Ecological Perspective written by František Baluška and published by Springer Science & Business Media. This book was released on 2010-08-05 with total page 255 pages. Available in PDF, EPUB and Kindle. Book excerpt: Since the concept of allelopathy was introduced almost 100 years ago, research has led to an understanding that plants are involved in complex communicative interactions. They use a battery of different signals that convey plant-relevant information within plant individuals as well as between plants of the same species or different species. The 13 chapters of this volume discuss all these topics from an ecological perspective. Communication between plants allows them to share physiological and ecological information relevant for their survival and ?tness. It is obvious that in these very early days of ecological plant communication research we are illuminating only the ‘tip of iceberg’ of the communicative nature of higher plants. Nevertheless, knowledge on the identity and informative value of volatiles used by plants for communication is increasing with breath-taking speed. Among the most spectacular examples are sit- tions where plant emitters warn neighbours about a danger, increasing their innate immunity, or when herbivore-attacked plants attract the enemies of the herbivores (‘cry for help’ and ‘plant bodyguards’ concepts). It is becoming obvious that plants use not only volatile signals but also diverse water soluble molecules, in the case of plant roots, to safeguard their evolutionary success and accomplish self/non-self kin rec- nition. Importantly, as with all the examples of biocommunication, irrespective of whether signals and signs are transmitted via physical or chemical pathways, plant communication is a rule-governed and sign-mediated process.

Plant Mitochondria

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Publisher : Humana
ISBN 13 : 9781071616529
Total Pages : 342 pages
Book Rating : 4.6/5 (165 download)

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Book Synopsis Plant Mitochondria by : Olivier Van Aken

Download or read book Plant Mitochondria written by Olivier Van Aken and published by Humana. This book was released on 2021-10-15 with total page 342 pages. Available in PDF, EPUB and Kindle. Book excerpt: This detailed volume presents a wide range of techniques for plant mitochondrial analysis, ranging from tried-and-tested work horse techniques to the latest innovations. Within its pages, it explores subjects such as affinity-based isolation of mitochondria with magnetic beads, mitochondrial quality assessment protocols, measurement of uptake and release of specific metabolites, mitochondrial protein identification and visualization, as well as gene splicing and editing, and much more. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Plant Mitochondria: Methods and Protocols provides a highly useful set of methodologies for the plant mitochondrial community to help discover more interesting aspects of plant mitochondria in the years to come.

Combined Stresses in Plants

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Publisher : Springer
ISBN 13 : 3319078992
Total Pages : 271 pages
Book Rating : 4.3/5 (19 download)

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Book Synopsis Combined Stresses in Plants by : Ramamurthy Mahalingam

Download or read book Combined Stresses in Plants written by Ramamurthy Mahalingam and published by Springer. This book was released on 2014-12-05 with total page 271 pages. Available in PDF, EPUB and Kindle. Book excerpt: The unique responses of plants to combined stresses have been observed at physiological, biochemical, and molecular levels. This book provides an analysis of all three levels of change in various plants in response to different combinations of stresses. The text provides a general review of the combined stress paradigm, focuses on the impact of higher CO2 levels in combination with other stresses, examines drought stress in conjunction with other abiotic factors in different crop plants as well as the combination of biotic and abiotic factors, and discusses the impact of combined stresses in forest ecosystems. Written by experts in the field, Combined Stresses in Plants: Physiological, Molecular, and Biochemical Aspects is a valuable resource for scientists, graduate students, and post-doctoral fellows alike working in plant stresses.

Comprehensive and Molecular Phytopathology

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Publisher : Elsevier
ISBN 13 : 0080469337
Total Pages : 497 pages
Book Rating : 4.0/5 (84 download)

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Book Synopsis Comprehensive and Molecular Phytopathology by : Yuri Dyakov

Download or read book Comprehensive and Molecular Phytopathology written by Yuri Dyakov and published by Elsevier. This book was released on 2007-01-09 with total page 497 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book offers a collection of information on successive steps of molecular 'dialogue' between plants and pathogens. It additionally presents data that reflects intrinsic logic of plant-parasite interactions. New findings discussed include: host and non-host resistance, specific and nonspecific elicitors, elicitors and suppressors, and plant and animal immunity. This book enables the reader to understand how to promote or prevent disease development, and allows them to systematize their own ideas of plant-pathogen interactions.* Offers a more extensive scope of the problem as compared to other books in the market* Presents data to allow consideration of host-parasite relationships in dynamics and reveals interrelations between pathogenicity and resistance factors* Discusses beneficial plant-microbe interactions and practical aspects of molecular investigations of plant-parasite relationships* Compares historical study of common and specific features of plant immunity with animal immunity

Plant Responses to Abiotic Stress

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Publisher : Springer Science & Business Media
ISBN 13 : 9783540200376
Total Pages : 336 pages
Book Rating : 4.2/5 (3 download)

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Book Synopsis Plant Responses to Abiotic Stress by : Heribert Hirt

Download or read book Plant Responses to Abiotic Stress written by Heribert Hirt and published by Springer Science & Business Media. This book was released on 2003-10-08 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: Environmental stresses represent the most limiting factors for agricultural productivity. Apart from biotic stress caused by plant pathogens, there are a number of abiotic stresses such as extremes in temperature, drought, salinity, heavy metals and radiation which all have detrimental effects on plant growth and yield. However, certain plant species and ecotypes have developed various mechanisms to adapt to such stress conditions. Recent advances in the understanding of these abiotic stress responses provided the impetus for compiling up-to-date reviews discussing all relevant topics in abiotic stress signaling of plants in a single volume. Topical reviews were prepared by selected experts and contain an introduction, discussion of the state of the art and important future tasks of the particular fields.

Industrial Pharmaceutical Biotechnology

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Publisher : Wiley-VCH
ISBN 13 :
Total Pages : 328 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Industrial Pharmaceutical Biotechnology by : Heinrich Klefenz

Download or read book Industrial Pharmaceutical Biotechnology written by Heinrich Klefenz and published by Wiley-VCH. This book was released on 2002-04-22 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume focuses on pharmaceutical biotechnology as a key area of life sciences. The complete range of concepts, processes and technologies of biotechnology is applied in modern industrial pharmaceutical research, development and production. The results of genome sequencing and studies of biological-genetic function are combined with chemical, micro-electronic and microsystem technology to produce medical devices and diagnostic biochips. A multitude of biologically active molecules is expanded by additional novel structures created with newly arranged gene clusters and bio-catalytic chemical processes. New organisational structures in the co-operation of institutes, companies and networks enable faster knowledge and product development and immediate application of the results of research and process development. This book is the ideal source of information for scientists and engineers in research and development, for decision-makers in biotech, pharma and chemical corporations, as well as for research institutes, but also for founders of biotech companies and people working for venture capital corporations.

Seed Endophytes

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Publisher : Springer
ISBN 13 : 3030105040
Total Pages : 497 pages
Book Rating : 4.0/5 (31 download)

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Book Synopsis Seed Endophytes by : Satish Kumar Verma

Download or read book Seed Endophytes written by Satish Kumar Verma and published by Springer. This book was released on 2019-04-05 with total page 497 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on the importance and roles of seed microbiomes in sustainable agriculture by exploring the diversity of microbes vectored on and within seeds of both cultivated and non-cultivated plants. It provides essential insights into how seeds can be adapted to enhance microbiome vectoring, how damaged seed microbiomes can be assembled again and how seed microbiomes can be conserved. Plant seeds carry not only embryos and nutrients to fuel early seedling growth, but also microbes that modulate development, soil nutrient acquisition, and defense against pathogens and other stressors. Many of these microbes (bacteria and fungi) become endophytic, entering into the tissues of plants, and typically exist within plants without inducing negative effects. Although they have been reported in all plants examined to date, the extent to which plants rely on seed vectored microbiomes to enhance seedling competitiveness and survival is largely unappreciated. How microbes function to increase the fitness of seedlings is also little understood. The book is a unique and important resource for researchers and students in microbial ecology and biotechnology. Further, it appeals to applied academic and industrial agriculturists interested in increasing crop health and yield.

Bioinformatics and Molecular Evolution

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Author :
Publisher : John Wiley & Sons
ISBN 13 : 1118697065
Total Pages : 532 pages
Book Rating : 4.1/5 (186 download)

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Book Synopsis Bioinformatics and Molecular Evolution by : Paul G. Higgs

Download or read book Bioinformatics and Molecular Evolution written by Paul G. Higgs and published by John Wiley & Sons. This book was released on 2013-04-30 with total page 532 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the current era of complete genome sequencing, Bioinformatics and Molecular Evolution provides an up-to-date and comprehensive introduction to bioinformatics in the context of evolutionary biology. This accessible text: provides a thorough examination of sequence analysis, biological databases, pattern recognition, and applications to genomics, microarrays, and proteomics emphasizes the theoretical and statistical methods used in bioinformatics programs in a way that is accessible to biological science students places bioinformatics in the context of evolutionary biology, including population genetics, molecular evolution, molecular phylogenetics, and their applications features end-of-chapter problems and self-tests to help students synthesize the materials and apply their understanding is accompanied by a dedicated website - www.blackwellpublishing.com/higgs - containing downloadable sequences, links to web resources, answers to self-test questions, and all artwork in downloadable format (artwork also available to instructors on CD-ROM). This important textbook will equip readers with a thorough understanding of the quantitative methods used in the analysis of molecular evolution, and will be essential reading for advanced undergraduates, graduates, and researchers in molecular biology, genetics, genomics, computational biology, and bioinformatics courses.

The New Avenues in Bioinformatics

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Publisher : Springer Science & Business Media
ISBN 13 : 1402028342
Total Pages : 276 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis The New Avenues in Bioinformatics by : Joseph Seckbach

Download or read book The New Avenues in Bioinformatics written by Joseph Seckbach and published by Springer Science & Business Media. This book was released on 2007-11-12 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics has ignited the imagination of scientists, entrepreneurs and the general public. At the meeting place of two fast growth disciplines, biology and computer science Bioinformatics is one of the cornerstones of the new biology. It is clearly pivotal to the translation of high throughput projects such the human genome project into useful knowledge. Yet despite all this attention, there is no consensus on what exactly is Bioinformatics. There are several canonical topics, such as gene structure prediction, protein functional classification or structure prediction. The present book explores new frontiers in bioinformatics, such as Glycomics or the computational modeling of genetic processes. We also discuss confounding factors that we find crucial to the development of the field, such as the ability to protect and restrict intellectual property in the field, or the challenges involved in educating bioinformatics users. Finally, we touch upon some fundamental questions, such as what information is and how it is captured in biological systems. By bringing to the readers such a broad spectrum of reviews, we hope to capture the vibrant spirit of this young science and to truly represent the fast pace with which it is still developing.