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Transcript Profiling In Rice Using Serial Analysis Of Gene Expression Sage Technology
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Book Synopsis Genomics-Assisted Crop Improvement by : R.K. Varshney
Download or read book Genomics-Assisted Crop Improvement written by R.K. Varshney and published by Springer Science & Business Media. This book was released on 2007-12-12 with total page 405 pages. Available in PDF, EPUB and Kindle. Book excerpt: This superb volume provides a critical assessment of genomics tools and approaches for crop breeding. Volume 1 presents the status and availability of genomic resources and platforms, and also devises strategies and approaches for effectively exploiting genomics research. Volume 2 goes into detail on a number of case studies of several important crop and plant species that summarize both the achievements and limitations of genomics research for crop improvement.
Book Synopsis Analysing Gene Expression by : Stefan Lorkowski
Download or read book Analysing Gene Expression written by Stefan Lorkowski and published by John Wiley & Sons. This book was released on 2006-03-06 with total page 992 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book combines the experience of 225 experts on 900 pages. Scientists worldwide are currently overwhelmed by the ever-increasing number and diversity of genome projects. This handbook is your guide through the jungle of new methods and techniques available to analyse gene expression - the first to provide such a broad view of the measurement of mRNA and protein expression in vitro, in situ and even in vivo. Despite this broad approach, detail is sufficient for you to grasp the principles behind each method. In each case, the authors weigh up the advantages and disadvantages, paying particular attention to the automated, high-throughput processing demanded by the biotech industry. Completely up to date, the book covers such ground-breaking methods such as DNA microarrays, serial analysis of gene expression, differential display, and identification of open reading frame expressed sequence tags. All the methods and necessary equipment are presented visually in more than 300 mainly colour illustrations to assist their step-by-step reproduction in your laboratory. Each chapter is rounded off with its own set of extensive references that provide access to detailed experimental protocols. In short, the bible of analysing gene expression.
Book Synopsis Serial Analysis of Gene Expression (SAGE) by : Kåre Lehmann Nielsen
Download or read book Serial Analysis of Gene Expression (SAGE) written by Kåre Lehmann Nielsen and published by Springer Science & Business Media. This book was released on 2008 with total page 213 pages. Available in PDF, EPUB and Kindle. Book excerpt: Serial Analysis of Gene Expression (SAGE): Digital Gene Expression Profiling facilitates the introduction of SAGE into the laboratory, and provides a framework for interpreting and comparing data derived from SAGE experiments. Of the several methods of genetic profiling available, only SAGE measures the expression of both known and unknown genes. SAGE studies encompass 50,000 tags and can provide detailed knowledge of the 2000 most highly expressed genes in the tissue sample. The SAGE protocols presented are detailed, fully annotated, and tested, and are all written by experienced SAGE researchers from around the world. Part 1 is dedicated to experimental procedures of SAGE and related methods including aRNA LongSAGE, SuperSAGE, DeepSAGE, and GMAT. Part 2 provides methods for extraction and filtration of tags, analysis of ditag populations, and completing statistically correct comparisons of gene expression profiles. Comparative transcriptomics enables scientists to understand the underlying genetics of biological changes such as development, disease, crop yield, and resistance. SAGE analysis is also used to obtain unknown tags, which can be used as gene-specific primers in Rapid Amplification of cDNA Ends (RACE) reactions to generate full-length transcripts for cloning and sequencing. This book will be an indispensable tool for any lab engaged in genetic profiling and comparative transcriptomics, and will help many laboratories to successfully implement tag-based sequencing methods and procedures and obtain comprehensive, useful, and interpretative data.
Author :Narayana M. Upadhyaya Publisher :Springer Science & Business Media ISBN 13 :0387489142 Total Pages :521 pages Book Rating :4.3/5 (874 download)
Book Synopsis Rice Functional Genomics by : Narayana M. Upadhyaya
Download or read book Rice Functional Genomics written by Narayana M. Upadhyaya and published by Springer Science & Business Media. This book was released on 2007-05-19 with total page 521 pages. Available in PDF, EPUB and Kindle. Book excerpt: Rice has been chosen as a model cereal for functional genomics because of its well understood genetics. In addition, there is great similarities among all the cereals and grasses: any understanding of rice genes is directly applicable to the genes of other cereals. This book details rice functional genomics. It takes a multi-pronged genome-wide approach using structural similarities, expression profiles, and mutant phenotypes. Coverage includes the current status of genome sequencing and annotation, various tools, and resources being developed worldwide.
Book Synopsis PCR Protocols by : John M. S. Bartlett
Download or read book PCR Protocols written by John M. S. Bartlett and published by Springer Science & Business Media. This book was released on 2008-02-03 with total page 1083 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this new edition, the editors have thoroughly updated and dramatically expanded the number of protocols to take advantage of the newest technologies used in all branches of research and clinical medicine today. These proven methods include real time PCR, SNP analysis, nested PCR, direct PCR, and long range PCR. Among the highlights are chapters on genome profiling by SAGE, differential display and chip technologies, the amplification of whole genome DNA by random degenerate oligonucleotide PCR, and the refinement of PCR methods for the analysis of fragmented DNA from fixed tissues. Each fully tested protocol is described in step-by-step detail by an established expert in the field and includes a background introduction outlining the principle behind the technique, equipment and reagent lists, tips on trouble shooting and avoiding known pitfalls, and, where needed, a discussion of the interpretation and use of results.
Book Synopsis Plant Bioinformatics by : David Edwards
Download or read book Plant Bioinformatics written by David Edwards and published by Springer Science & Business Media. This book was released on 2008-01-07 with total page 551 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to assist research scientists in choosing the most applicable database or bioinformatics tools to aid and promote their research in plant biotechnology. Chapters include practical examples and highlight common problems encountered in bioinformatics analysis. Further chapters are aimed at researchers developing bioinformatics databases and tools, detailing commonly applied database formats and biology-focused scripting languages.
Book Synopsis Essentials of Bioinformatics, Volume III by : Khalid Rehman Hakeem
Download or read book Essentials of Bioinformatics, Volume III written by Khalid Rehman Hakeem and published by Springer Nature. This book was released on 2019-11-01 with total page 228 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics is an integrative field of computer science, genetics, genomics, proteomics, and statistics, which has undoubtedly revolutionized the study of biology and medicine in past decades. It mainly assists in modeling, predicting and interpreting large multidimensional biological data by utilizing advanced computational methods. Despite its enormous potential, bioinformatics is not widely integrated into the academic curriculum as most life science students and researchers are still not equipped with the necessary knowledge to take advantage of this powerful tool. Hence, the primary purpose of our book is to supplement this unmet need by providing an easily accessible platform for students and researchers starting their career in life sciences. This book aims to avoid sophisticated computational algorithms and programming. Instead, it will mostly focus on simple DIY analysis and interpretation of biological data with personal computers. Our belief is that once the beginners acquire these basic skillsets, they will be able to handle most of the bioinformatics tools for their research work and to better understand their experimental outcomes. The third volume is titled In Silico Life Sciences: Agriculture. It focuses on plant genetic, genomic, transcriptomic, proteomic and metabolomics data. Using examples of new crop diseases-emergence, crop productivity and biotic/abiotic stress tolerance, this book illustrates how bioinformatics can be an integral components of modern day plant science research.
Download or read book OMICS written by Debmalya Barh and published by CRC Press. This book was released on 2013-03-26 with total page 721 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the advent of new technologies and acquired knowledge, the number of fields in omics and their applications in diverse areas are rapidly increasing in the postgenomics era. Such emerging fields—including pharmacogenomics, toxicogenomics, regulomics, spliceomics, metagenomics, and environomics—present budding solutions to combat global challenges in biomedicine, agriculture, and the environment. OMICS: Applications in Biomedical, Agricultural, and Environmental Sciences provides valuable insights into the applications of modern omics technologies to real-world problems in the life sciences. Filling a gap in the literature, it offers a broad, multidisciplinary view of current and emerging applications of omics in a single volume. Written by highly experienced active researchers, each chapter describes a particular area of omics and the associated technologies and applications. Topics covered include: Proteomics, epigenomics, and pharmacogenomics Toxicogenomics and the assessment of environmental pollutants Applications of plant metabolomics Nutrigenomics and its therapeutic applications Microalgal omics and omics approaches in biofuel production Next-generation sequencing and omics technology for transgenic plant analysis Omics approaches in crop improvement Engineering dark-operative chlorophyll synthesis Computational regulomics Omics techniques for the analysis of RNA splicing New fields, including metagenomics, glycomics, and miRNA Breast cancer biomarkers for early detection Environomics strategies for environmental sustainability This timely book explores a wide range of omics application areas in the biomedical, agricultural, and environmental sciences. Throughout, it highlights working solutions as well as open problems and future challenges. Demonstrating the diversity of omics, it introduces readers to state-of-the-art developments and trends in omics-driven research.
Book Synopsis The Handbook of Plant Functional Genomics by : Guenter Kahl
Download or read book The Handbook of Plant Functional Genomics written by Guenter Kahl and published by John Wiley & Sons. This book was released on 2008-09-08 with total page 576 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this incisive, concise overview of this booming field, the editors -- two of the leading figures in the field with a proven track record -- combine their expertise to provide an invaluable reference on the topic. Following a treatment of transcriptome analysis, the book goes on to discuss replacement and mutation analysis, gene silencing and computational analysis. The whole is rounded off with a look at emerging technologies. Each chapter is accompanied by a concise overview, helping readers to quickly identify topics of interest, while important, carefully selected words and concepts are explained in a handy glossary. Equally accessible to both experienced scientists and newcomers to the field.
Download or read book Rice written by C. Wayne Smith and published by John Wiley & Sons. This book was released on 2002-09-09 with total page 668 pages. Available in PDF, EPUB and Kindle. Book excerpt: Thorough coverage of rice, from cultivar development tomarketing Rice: Evolution, History, Production, and Technology, the thirdbook in the Wiley Series in Crop Science, provides unique,single-source coverage of rice, from cultivar developmenttechniques and soil characteristics to harvesting, storage, andgermplasm resources. Rice covers the plant's origins and history,physiology and genetics, production and production hazards,harvesting, processing, and products. Comprehensive coverage includes: * Color plates of diseases, insects, and other productionhazards * The latest information on pest control * Up-to-date material on marketing * A worldwide perspective of the rice industry Rice provides detailed information in an easy-to-use format, makingit valuable to scientists and researchers as well as growers,processors, and grain merchants and shippers.
Book Synopsis Plant Abiotic Stress Physiology by : Tariq Aftab
Download or read book Plant Abiotic Stress Physiology written by Tariq Aftab and published by CRC Press. This book was released on 2022-02-17 with total page 322 pages. Available in PDF, EPUB and Kindle. Book excerpt: This two-volume set highlights the various innovative and emerging techniques and molecular applications that are currently being used in plant abiotic stress physiology. Volume 1: Responses and Adaptations focuses on the responses and adaptations of plants to stress factors at the cellular and molecular levels and offers a variety of advanced management strategies and technologies. Volume 2: Molecular Advancements introduces a range of state-of-the-art molecular advances for the mitigation of abiotic stress in plants. With contributions from specialists in the field, Volume 1 first discusses the physiology and defense mechanisms of plants and the various kinds of stress, such as from challenging environments, climate change, and nutritional deficiencies. It goes on to discuss trailblazing management techniques that include genetics approaches for improving abiotic stress tolerance in crop plants along with CRISPR/CAS-mediated genome editing technologies. Volume 2 discusses how plants have developed diverse physiological and molecular adjustments to safeguard themselves under challenging conditions and how emerging new technologies can utilize these plant adaptations to enhance plant resistance. These include using plant-environment interactions to develop crop species that are resilient to climate change, applying genomics and phenomics approaches from the study of abiotic stress tolerance and more. Agriculture today faces countless challenges to meet the rising need for sustainable food supplies and guarantees of high-quality nourishment for a quickly increasing population. To ensure sufficient food production, it is necessary to address the difficult environmental circumstances that are causing cellular oxidative stress in plants due to abiotic factors, which play a defining role in shaping yield of crop plants. These two volumes help to meet these challenges by providing a rich source of information on plant abiotic stress physiology and effective management techniques.
Book Synopsis The Future of Rice Demand: Quality Beyond Productivity by : Antonio Costa de Oliveira
Download or read book The Future of Rice Demand: Quality Beyond Productivity written by Antonio Costa de Oliveira and published by Springer Nature. This book was released on 2020-03-27 with total page 541 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to provide an overview of the challenges and available technologies to improve rice and provide a response to the challenge posed by increasing world population and the resultant food shortages. Nutritional aspects of rice products and omics and the molecular technologies currently being used are covered in depth. As a staple food for over 50% of the world ́s population, an estimated 9 billion people will need to be fed by 2050, and healthy and uncontaminated foods need to reach consumers in developed and developing countries.This makes quality beyond productivity incredibly important and is one of the overriding themes of this work. The Future of Rice Demand: Quality Beyond Productivity offers researchers a better understanding of the nutritional aspects of rice. Omics technologies applied to cereal grain quality have been scarce in the literature published to date, making this text an excellent single source for researchers in regions where rice is a major crop. The first section of the book focuses on the major aspects of the industrial processing of all rice types. Further sections look at contamination prevention and biofortification, special rice types, and omics and other molecular tools used in the mass production and processing of healthy rice products.
Book Synopsis Rice Genetics Iv - Proceedings Of The Fourth International Rice Genetics Symposium by : Gurdev S Khush
Download or read book Rice Genetics Iv - Proceedings Of The Fourth International Rice Genetics Symposium written by Gurdev S Khush and published by World Scientific. This book was released on 2008-04-03 with total page 501 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Rice Genetics Collection of past symposia and other selected literature contains nearly 4,400 pages of searchable information on rice genetics and cytogenetics published by the IRRI and its partners since 1964. In addition to the five genetics symposia held at 5-year intervals since 1985, the collection contains classic publications that kicked off significant reporting on these subjects in the early 1960s. This collection is a comprehensive and historical documentation on the subject of rice genetics, spanning 45 years of research and scholarly work.Held in 2000 and published the following year, Rice Genetics IV contains 31 chapters from various contributors on topics dealing with rice genetic research, including molecular markers, genetic diversity, and evolution; structural and functional genomics; gene isolation and function; and transformation.
Download or read book Cumulated Index Medicus written by and published by . This book was released on 2000 with total page 1844 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Functional Genomics written by Chris Town and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 204 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides an overview of the current state of plant genomics using a number of different approaches at a time when we celebrate the completion of the Arabidopsis genome sequence and begin the transition from structural to functional studies of this and other plant genomes. Topics covered include comparative genomics, computational approaches to gene identification and annotation and data management, high throughput methodologies for functional analysis at the levels of transcript, protein and metabolite, and methods for genome modification by both homologous and site-specific recombination. The book will provide a good introduction to some of the many aspects of genomics both for established plant biologists who wish to understand this rapidly developing area and for scientists early in their careers. It is also very suitable for a one-semester course in Plant Genomics at the upper-level undergraduate/graduate student level, where the individual chapters provide a framework that can be readily expanded by use of some of the many articles in the bibliographies.
Book Synopsis The Plant Family Fabaceae by : Mirza Hasanuzzaman
Download or read book The Plant Family Fabaceae written by Mirza Hasanuzzaman and published by Springer Nature. This book was released on 2020-07-01 with total page 547 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book comprehensively introduces all aspects of the physiology, stress responses and tolerance to abiotic stresses of the Fabaceae plants. Different plant families have been providing food, fodder, fuel, medicine and other basic needs for the human and animal since the ancient time. Among the plant families Fabaceae have special importance for their agri-horticultural importance and multifarious uses apart from the basic needs. Interest in the response of Fabaceae plants toward abiotic stresses is growing considering the economic importance and the special adaptive mechanisms. Recent advances and developments in molecular and biotechnological tools has contributed to ease and wider this mission. This book provides up-to-date findings that will be of greater use for the students and researchers, particularly Plant Physiologists, Environmental Scientists, Biotechnologists, Botanists, Food Scientists and Agronomists, to get the information on the recent advances on this plant family in regard to physiology and stress tolerance.
Book Synopsis Genomics of Plants and Fungi by : Rolf A. Prade
Download or read book Genomics of Plants and Fungi written by Rolf A. Prade and published by CRC Press. This book was released on 2003-04-30 with total page 402 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides technical insight on how genomics-oriented studies may be used to bring new understanding to established models of fungal development. The book helps to assess and solve problems associated with multiple copies of genes and proteins with seemingly identical functions and depicts various industrial applications. To bridge the in