The Science of High Performance Algorithms for Hierarchical Matrices

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Publisher :
ISBN 13 :
Total Pages : 230 pages
Book Rating : 4.:/5 (15 download)

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Book Synopsis The Science of High Performance Algorithms for Hierarchical Matrices by : Chen-Han Yu (Ph. D.)

Download or read book The Science of High Performance Algorithms for Hierarchical Matrices written by Chen-Han Yu (Ph. D.) and published by . This book was released on 2018 with total page 230 pages. Available in PDF, EPUB and Kindle. Book excerpt: Many matrices in scientific computing, statistical inference, and machine learning exhibit sparse and low-rank structure. Typically, such structure is exposed by appropriate matrix permutation of rows and columns, and exploited by constructing an hierarchical approximation. That is, the matrix can be written as a summation of sparse and low-rank matrices and this structure repeats recursively. Matrices that admit such hierarchical approximation are known as hierarchical matrices (H-matrices in brief). H-matrix approximation methods are more general and scalable than solely using a sparse or low-rank matrix approximation. Classical numerical linear algebra operations on H-matrices-multiplication, factorization, and eigenvalue decomposition-can be accelerated by many orders of magnitude. Although the literature on H-matrices for problems in computational physics (low-dimensions) is vast, there is less work for generalization and problems appearing in machine learning. Also, there is limited work on high-performance computing algorithms for pure algebraic H-matrix methods. This dissertation tries to address these open problems on building hierarchical approximation for kernel matrices and generic symmetric positive definite (SPD) matrices. We propose a general tree-based framework (GOFMM) for appropriately permuting a matrix to expose its hierarchical structure. GOFMM supports both static and dynamic scheduling, shared memory and distributed memory architectures, and hardware accelerators. The supported algorithms include kernel methods, approximate matrix multiplication and factorization for large sparse and dense matrices.

High Performance Algorithms for Structured Matrix Problems

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Publisher : Nova Publishers
ISBN 13 : 9781560725947
Total Pages : 228 pages
Book Rating : 4.7/5 (259 download)

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Book Synopsis High Performance Algorithms for Structured Matrix Problems by : Peter Arbenz

Download or read book High Performance Algorithms for Structured Matrix Problems written by Peter Arbenz and published by Nova Publishers. This book was released on 1998 with total page 228 pages. Available in PDF, EPUB and Kindle. Book excerpt: Comprises 10 contributions that summarize the state of the art in the areas of high performance solutions of structured linear systems and structured eigenvalue and singular-value problems. Topics covered range from parallel solvers for sparse or banded linear systems to parallel computation of eigenvalues and singular values of tridiagonal and bidiagonal matrices. Specific paper topics include: the stable parallel solution of general narrow banded linear systems; efficient algorithms for reducing banded matrices to bidiagonal and tridiagonal form; a numerical comparison of look-ahead Levinson and Schur algorithms for non-Hermitian Toeplitz systems; and parallel CG-methods automatically optimized for PC and workstation clusters. Annotation copyrighted by Book News, Inc., Portland, OR

Hierarchical Matrices: Algorithms and Analysis

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Publisher : Springer
ISBN 13 : 3662473240
Total Pages : 532 pages
Book Rating : 4.6/5 (624 download)

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Book Synopsis Hierarchical Matrices: Algorithms and Analysis by : Wolfgang Hackbusch

Download or read book Hierarchical Matrices: Algorithms and Analysis written by Wolfgang Hackbusch and published by Springer. This book was released on 2015-12-21 with total page 532 pages. Available in PDF, EPUB and Kindle. Book excerpt: This self-contained monograph presents matrix algorithms and their analysis. The new technique enables not only the solution of linear systems but also the approximation of matrix functions, e.g., the matrix exponential. Other applications include the solution of matrix equations, e.g., the Lyapunov or Riccati equation. The required mathematical background can be found in the appendix. The numerical treatment of fully populated large-scale matrices is usually rather costly. However, the technique of hierarchical matrices makes it possible to store matrices and to perform matrix operations approximately with almost linear cost and a controllable degree of approximation error. For important classes of matrices, the computational cost increases only logarithmically with the approximation error. The operations provided include the matrix inversion and LU decomposition. Since large-scale linear algebra problems are standard in scientific computing, the subject of hierarchical matrices is of interest to scientists in computational mathematics, physics, chemistry and engineering.

Hierarchical Matrices: Algorithms and Analysis

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Publisher :
ISBN 13 : 9783662473252
Total Pages : pages
Book Rating : 4.4/5 (732 download)

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Book Synopsis Hierarchical Matrices: Algorithms and Analysis by : Wolfgang Hackbusch

Download or read book Hierarchical Matrices: Algorithms and Analysis written by Wolfgang Hackbusch and published by . This book was released on 2015 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: This self-contained monograph presents matrix algorithms and their analysis. The new technique enables not only the solution of linear systems but also the approximation of matrix functions, e.g., the matrix exponential. Other applications include the solution of matrix equations, e.g., the Lyapunov or Riccati equation. The required mathematical background can be found in the appendix. The numerical treatment of fully populated large-scale matrices is usually rather costly. However, the technique of hierarchical matrices makes it possible to store matrices and to perform matrix operations approximately with almost linear cost and a controllable degree of approximation error. For important classes of matrices, the computational cost increases only logarithmically with the approximation error. The operations provided include the matrix inversion and LU decomposition. Since large-scale linear algebra problems are standard in scientific computing, the subject of hierarchical matrices is of interest to scientists in computational mathematics, physics, chemistry and engineering.

Computational Science - Iccs 2001

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Publisher : Springer Science & Business Media
ISBN 13 : 9783540422327
Total Pages : 1340 pages
Book Rating : 4.4/5 (223 download)

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Book Synopsis Computational Science - Iccs 2001 by : Vassil Alexandrov

Download or read book Computational Science - Iccs 2001 written by Vassil Alexandrov and published by Springer Science & Business Media. This book was released on 2001-05-24 with total page 1340 pages. Available in PDF, EPUB and Kindle. Book excerpt: LNCS volumes 2073 and 2074 contain the proceedings of the International Conference on Computational Science, ICCS 2001, held in San Francisco, California, May 27 -31, 2001. The two volumes consist of more than 230 contributed and invited papers that reflect the aims of the conference to bring together researchers and scientists from mathematics and computer science as basic computing disciplines, researchers from various application areas who are pioneering advanced application of computational methods to sciences such as physics, chemistry, life sciences, and engineering, arts and humanitarian fields, along with software developers and vendors, to discuss problems and solutions in the area, to identify new issues, and to shape future directions for research, as well as to help industrial users apply various advanced computational techniques.

A Parallel Algorithm Synthesis Procedure for High-Performance Computer Architectures

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Publisher : Springer Science & Business Media
ISBN 13 : 1441986502
Total Pages : 114 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis A Parallel Algorithm Synthesis Procedure for High-Performance Computer Architectures by : Ian N. Dunn

Download or read book A Parallel Algorithm Synthesis Procedure for High-Performance Computer Architectures written by Ian N. Dunn and published by Springer Science & Business Media. This book was released on 2012-09-14 with total page 114 pages. Available in PDF, EPUB and Kindle. Book excerpt: Despite five decades of research, parallel computing remains an exotic, frontier technology on the fringes of mainstream computing. Its much-heralded triumph over sequential computing has yet to materialize. This is in spite of the fact that the processing needs of many signal processing applications continue to eclipse the capabilities of sequential computing. The culprit is largely the software development environment. Fundamental shortcomings in the development environment of many parallel computer architectures thwart the adoption of parallel computing. Foremost, parallel computing has no unifying model to accurately predict the execution time of algorithms on parallel architectures. Cost and scarce programming resources prohibit deploying multiple algorithms and partitioning strategies in an attempt to find the fastest solution. As a consequence, algorithm design is largely an intuitive art form dominated by practitioners who specialize in a particular computer architecture. This, coupled with the fact that parallel computer architectures rarely last more than a couple of years, makes for a complex and challenging design environment. To navigate this environment, algorithm designers need a road map, a detailed procedure they can use to efficiently develop high performance, portable parallel algorithms. The focus of this book is to draw such a road map. The Parallel Algorithm Synthesis Procedure can be used to design reusable building blocks of adaptable, scalable software modules from which high performance signal processing applications can be constructed. The hallmark of the procedure is a semi-systematic process for introducing parameters to control the partitioning and scheduling of computation and communication. This facilitates the tailoring of software modules to exploit different configurations of multiple processors, multiple floating-point units, and hierarchical memories. To showcase the efficacy of this procedure, the book presents three case studies requiring various degrees of optimization for parallel execution.

High-Performance Scientific Computing

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Publisher : Springer Science & Business Media
ISBN 13 : 1447124367
Total Pages : 351 pages
Book Rating : 4.4/5 (471 download)

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Book Synopsis High-Performance Scientific Computing by : Michael W. Berry

Download or read book High-Performance Scientific Computing written by Michael W. Berry and published by Springer Science & Business Media. This book was released on 2012-01-18 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the state of the art in parallel numerical algorithms, applications, architectures, and system software. The book examines various solutions for issues of concurrency, scale, energy efficiency, and programmability, which are discussed in the context of a diverse range of applications. Features: includes contributions from an international selection of world-class authorities; examines parallel algorithm-architecture interaction through issues of computational capacity-based codesign and automatic restructuring of programs using compilation techniques; reviews emerging applications of numerical methods in information retrieval and data mining; discusses the latest issues in dense and sparse matrix computations for modern high-performance systems, multicores, manycores and GPUs, and several perspectives on the Spike family of algorithms for solving linear systems; presents outstanding challenges and developing technologies, and puts these in their historical context.

Matrix Computations

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Publisher : JHU Press
ISBN 13 : 1421408597
Total Pages : 781 pages
Book Rating : 4.4/5 (214 download)

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Book Synopsis Matrix Computations by : Gene H. Golub

Download or read book Matrix Computations written by Gene H. Golub and published by JHU Press. This book was released on 2013-02-15 with total page 781 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive treatment of numerical linear algebra from the standpoint of both theory and practice. The fourth edition of Gene H. Golub and Charles F. Van Loan's classic is an essential reference for computational scientists and engineers in addition to researchers in the numerical linear algebra community. Anyone whose work requires the solution to a matrix problem and an appreciation of its mathematical properties will find this book to be an indispensible tool. This revision is a cover-to-cover expansion and renovation of the third edition. It now includes an introduction to tensor computations and brand new sections on • fast transforms • parallel LU • discrete Poisson solvers • pseudospectra • structured linear equation problems • structured eigenvalue problems • large-scale SVD methods • polynomial eigenvalue problems Matrix Computations is packed with challenging problems, insightful derivations, and pointers to the literature—everything needed to become a matrix-savvy developer of numerical methods and software. The second most cited math book of 2012 according to MathSciNet, the book has placed in the top 10 for since 2005.

Supercomputing Frontiers

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Publisher : Springer
ISBN 13 : 3319699539
Total Pages : 301 pages
Book Rating : 4.3/5 (196 download)

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Book Synopsis Supercomputing Frontiers by : Rio Yokota

Download or read book Supercomputing Frontiers written by Rio Yokota and published by Springer. This book was released on 2018-03-20 with total page 301 pages. Available in PDF, EPUB and Kindle. Book excerpt: It constitutes the refereed proceedings of the 4th Asian Supercomputing Conference, SCFA 2018, held in Singapore in March 2018. Supercomputing Frontiers will be rebranded as Supercomputing Frontiers Asia (SCFA), which serves as the technical programme for SCA18. The technical programme for SCA18 consists of four tracks: Application, Algorithms & Libraries Programming System Software Architecture, Network/Communications & Management Data, Storage & Visualisation The 20 papers presented in this volume were carefully reviewed nd selected from 60 submissions.

Computational Science - ICCS 2004

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Publisher : Springer Science & Business Media
ISBN 13 : 3540221158
Total Pages : 810 pages
Book Rating : 4.5/5 (42 download)

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Book Synopsis Computational Science - ICCS 2004 by : Marian Bubak

Download or read book Computational Science - ICCS 2004 written by Marian Bubak and published by Springer Science & Business Media. This book was released on 2004-05-24 with total page 810 pages. Available in PDF, EPUB and Kindle. Book excerpt: The International Conference on Computational Science (ICCS 2004) held in Krak ́ ow, Poland, June 6–9, 2004, was a follow-up to the highly successful ICCS 2003 held at two locations, in Melbourne, Australia and St. Petersburg, Russia; ICCS 2002 in Amsterdam, The Netherlands; and ICCS 2001 in San Francisco, USA. As computational science is still evolving in its quest for subjects of inves- gation and e?cient methods, ICCS 2004 was devised as a forum for scientists from mathematics and computer science, as the basic computing disciplines and application areas, interested in advanced computational methods for physics, chemistry, life sciences, engineering, arts and humanities, as well as computer system vendors and software developers. The main objective of this conference was to discuss problems and solutions in all areas, to identify new issues, to shape future directions of research, and to help users apply various advanced computational techniques. The event harvested recent developments in com- tationalgridsandnextgenerationcomputingsystems,tools,advancednumerical methods, data-driven systems, and novel application ?elds, such as complex - stems, ?nance, econo-physics and population evolution.

Computational Science — ICCS 2001

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Publisher : Springer
ISBN 13 : 3540455450
Total Pages : 1294 pages
Book Rating : 4.5/5 (44 download)

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Book Synopsis Computational Science — ICCS 2001 by : Vassil N. Alexandrov

Download or read book Computational Science — ICCS 2001 written by Vassil N. Alexandrov and published by Springer. This book was released on 2003-05-15 with total page 1294 pages. Available in PDF, EPUB and Kindle. Book excerpt: LNCS volumes 2073 and 2074 contain the proceedings of the International Conference on Computational Science, ICCS 2001, held in San Francisco, California, May 27 -31, 2001. The two volumes consist of more than 230 contributed and invited papers that reflect the aims of the conference to bring together researchers and scientists from mathematics and computer science as basic computing disciplines, researchers from various application areas who are pioneering advanced application of computational methods to sciences such as physics, chemistry, life sciences, and engineering, arts and humanitarian fields, along with software developers and vendors, to discuss problems and solutions in the area, to identify new issues, and to shape future directions for research, as well as to help industrial users apply various advanced computational techniques.

Algorithms for Memory Hierarchies

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Publisher : Springer Science & Business Media
ISBN 13 : 3540008837
Total Pages : 443 pages
Book Rating : 4.5/5 (4 download)

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Book Synopsis Algorithms for Memory Hierarchies by : Ulrich Meyer

Download or read book Algorithms for Memory Hierarchies written by Ulrich Meyer and published by Springer Science & Business Media. This book was released on 2003-04-07 with total page 443 pages. Available in PDF, EPUB and Kindle. Book excerpt: Algorithms that have to process large data sets have to take into account that the cost of memory access depends on where the data is stored. Traditional algorithm design is based on the von Neumann model where accesses to memory have uniform cost. Actual machines increasingly deviate from this model: while waiting for memory access, nowadays, microprocessors can in principle execute 1000 additions of registers; for hard disk access this factor can reach six orders of magnitude. The 16 coherent chapters in this monograph-like tutorial book introduce and survey algorithmic techniques used to achieve high performance on memory hierarchies; emphasis is placed on methods interesting from a theoretical as well as important from a practical point of view.

High Performance Computing in Science and Engineering

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Publisher : Springer Nature
ISBN 13 : 3030670775
Total Pages : 172 pages
Book Rating : 4.0/5 (36 download)

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Book Synopsis High Performance Computing in Science and Engineering by : Tomáš Kozubek

Download or read book High Performance Computing in Science and Engineering written by Tomáš Kozubek and published by Springer Nature. This book was released on 2021-01-07 with total page 172 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the thoroughly refereed post-conference proceedings of the 4th International Conference on High Performance Computing in Science and Engineering, HPCSE 2019, held in Karolinka, Czech Republic, in May 2019. The 9 papers presented in this volume were carefully reviewed and selected from 13 submissions. The conference provides an international forum for exchanging ideas among researchers involved in scientific and parallel computing, including theory and applications, as well as applied and computational mathematics. The focus of HPCSE 2019 was on models, algorithms, and software tools that facilitate efficient and convenient utilization of modern parallel and distributed computing architectures, as well as on large-scale applications.

Applied Parallel Computing

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Publisher : Springer
ISBN 13 : 3540757554
Total Pages : 1218 pages
Book Rating : 4.5/5 (47 download)

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Book Synopsis Applied Parallel Computing by : Bo Kagström

Download or read book Applied Parallel Computing written by Bo Kagström and published by Springer. This book was released on 2007-09-22 with total page 1218 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the thoroughly refereed post-proceedings of the 8th International Workshop on Applied Parallel Computing, PARA 2006. It covers partial differential equations, parallel scientific computing algorithms, linear algebra, simulation environments, algorithms and applications for blue gene/L, scientific computing tools and applications, parallel search algorithms, peer-to-peer computing, mobility and security, algorithms for single-chip multiprocessors.

The Art of High Performance Computing for Computational Science, Vol. 1

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Publisher : Springer
ISBN 13 : 9811361940
Total Pages : 219 pages
Book Rating : 4.8/5 (113 download)

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Book Synopsis The Art of High Performance Computing for Computational Science, Vol. 1 by : Masaaki Geshi

Download or read book The Art of High Performance Computing for Computational Science, Vol. 1 written by Masaaki Geshi and published by Springer. This book was released on 2019-05-14 with total page 219 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides basic and practical techniques of parallel computing and related methods of numerical analysis for researchers who conduct numerical calculation and simulation. Although the techniques provided in this book are field-independent, these methods can be used in fields such as physics, chemistry, biology, earth sciences, space science, meteorology, disaster prevention, and manufacturing. In particular, those who develop software code in these areas will find this book useful. The contents are suitable for graduate students and researchers in computational science rather than novices at programming or informed experts in computer science. Starting with an introduction to the recent trends in computer architecture and parallel processing, Chapter 1 explains the basic knowledge of speedup programs with simple examples of numerical computing. Chapters 2 – 4 detail the basics of parallel programming, the message passing interface (MPI), and OpenMP and discuss hybrid parallelization techniques. Showing an actual example of adaptation, Chapter 5 gives an overview of performance tuning and communication optimizations. To deal with dense matrix calculations, Chapter 6 details the basics and practice of linear algebra calculation libraries BLAS and LAPACK, including some examples that can be easily reproduced by readers using free software. Focusing on sparse matrix calculations, Chapter 7 explains high performance algorithms for numerical linear algebra. Chapter 8 introduces the fast Fourier transform in large-scale systems from the basics. Chapter 9 explains optimization and related topics such as debug methods and version control systems. Chapter 10 discusses techniques for increasing computation accuracy as an essential topic in numerical calculation. This is the first of the two volumes that grew out of a series of lectures in the K computer project in Japan. The second volume will focus on advanced techniques and examples of applications in materials science.

High Performance Computational Science and Engineering

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Publisher : Springer Science & Business Media
ISBN 13 : 0387240489
Total Pages : 238 pages
Book Rating : 4.3/5 (872 download)

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Book Synopsis High Performance Computational Science and Engineering by : Michael K. Ng

Download or read book High Performance Computational Science and Engineering written by Michael K. Ng and published by Springer Science & Business Media. This book was released on 2005-02-15 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Proceedings of the International Symposium on High Performance Computational Science and Engineering 2004 (IFIP World Computer Congress) is an essential reference for both academic and professional researchers in the field of computational science and engineering. Computational Science and Engineering is increasingly becoming an emerging and promising discipline in shaping future research and development activities in academia and industry ranging from engineering, science, finance, economics, arts and humanitarian fields. New challenges are in modeling of complex systems, sophisticated algorithms, advanced scientific and engineering computing, and associated (multi-disciplinary) problem solving environments. The papers presented in this volume are specially selected to address the most up-to-date ideas, results, work-in-progress and research experience in the area of high performance computational techniques for science and engineering applications. This state-of-the-are volume presents the proceedings of the International Symposium on High Performance Computational Science and Engineering, held in conjunction with the IFIP World Computer Congress, August 2004, in Toulouse, France. The collection will be important not only for computational science and engineering experts and researchers but for all teachers and administrators interested in high performance computational techniques.

Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing

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Publisher : SIAM
ISBN 13 : 9780898713039
Total Pages : 678 pages
Book Rating : 4.7/5 (13 download)

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Book Synopsis Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing by : J. J. Dongarra

Download or read book Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing written by J. J. Dongarra and published by SIAM. This book was released on 1992-01-01 with total page 678 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text gives the proceedings for the fifth conference on parallel processing for scientific computing.